Wall clock time and date at job start Wed Apr 1 2020 04:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38363 * 119.84988 * 2 1 4 4 C 1.37955 * 120.14029 * 179.97438 * 3 2 1 5 5 C 1.39575 * 119.85614 * 359.97438 * 4 3 2 6 6 C 1.47847 * 120.14472 * 179.97438 * 5 4 3 7 7 O 1.21551 * 120.00206 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99949 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99910 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46794 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.47029 * 65.00396 * 10 9 8 12 12 N 1.46897 * 109.47398 * 305.00298 * 10 9 8 13 13 C 1.46904 * 110.99785 * 156.85169 * 12 10 9 14 14 C 1.50697 * 109.46933 * 176.14663 * 13 12 10 15 15 O 1.21288 * 120.00185 * 0.02562 * 14 13 12 16 16 N 1.34785 * 119.99945 * 179.97438 * 14 13 12 17 17 C 1.37096 * 119.99767 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00068 * 359.97438 * 17 16 14 19 19 C 1.38947 * 119.99622 * 180.02562 * 17 16 14 20 20 N 1.31407 * 120.00102 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47084 * 59.99796 * 21 19 17 23 23 H 1.48494 * 109.47344 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46836 * 300.00200 * 21 19 17 25 25 C 1.53003 * 109.46868 * 185.00106 * 10 9 8 26 26 C 1.53002 * 109.46982 * 294.21078 * 25 10 9 27 27 C 1.52999 * 109.46879 * 54.21133 * 25 10 9 28 28 C 1.39582 * 119.71010 * 0.24612 * 5 4 3 29 29 C 1.37949 * 119.85200 * 359.51836 * 28 5 4 30 30 H 1.08998 * 109.47277 * 90.00103 * 1 2 3 31 31 H 1.08999 * 109.46571 * 209.99663 * 1 2 3 32 32 H 1.09002 * 109.46973 * 329.99589 * 1 2 3 33 33 H 1.07994 * 119.93084 * 359.97438 * 3 2 1 34 34 H 1.08000 * 120.06979 * 179.97438 * 4 3 2 35 35 H 0.97001 * 119.99777 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.46987 * 60.00217 * 9 8 6 37 37 H 1.08999 * 109.47246 * 300.00256 * 9 8 6 38 38 H 1.00892 * 110.99815 * 280.80415 * 12 10 9 39 39 H 1.08997 * 109.46997 * 296.15031 * 13 12 10 40 40 H 1.08997 * 109.47102 * 56.14695 * 13 12 10 41 41 H 0.96999 * 119.99816 * 0.02562 * 16 14 13 42 42 H 0.97004 * 119.99799 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.47002 * 174.21078 * 25 10 9 44 44 H 1.09002 * 109.47224 * 65.56516 * 26 25 10 45 45 H 1.09001 * 109.46827 * 185.55985 * 26 25 10 46 46 H 1.09001 * 109.47549 * 305.55759 * 26 25 10 47 47 H 1.08996 * 109.47513 * 59.99790 * 27 25 10 48 48 H 1.09006 * 109.46828 * 180.02562 * 27 25 10 49 49 H 1.08997 * 109.47258 * 299.99788 * 27 25 10 50 50 H 1.08000 * 120.06981 * 179.72809 * 28 5 4 51 51 H 1.08000 * 119.93004 * 180.22921 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2001 0.0000 4 6 3.5753 1.2071 0.0005 5 6 4.2762 0.0001 0.0016 6 6 5.7547 0.0001 0.0016 7 8 6.3624 1.0528 0.0002 8 7 6.4286 -1.1670 0.0032 9 6 7.8936 -1.1670 0.0026 10 6 8.4036 -2.6095 0.0053 11 1 8.1149 -3.0987 -0.9250 12 7 7.8183 -3.3337 1.1414 13 6 7.8156 -4.7823 0.8973 14 6 7.2970 -5.4966 2.1187 15 8 6.9621 -4.8615 3.0962 16 7 7.2043 -6.8413 2.1244 17 6 6.7320 -7.4910 3.2354 18 1 6.4347 -6.9255 4.1061 19 6 6.6370 -8.8772 3.2415 20 7 6.9993 -9.5653 2.1823 21 14 5.9942 -9.7627 4.7555 22 1 4.6109 -9.3070 5.0455 23 1 5.9920 -11.2270 4.5090 24 1 6.8693 -9.4579 5.9160 25 6 9.9285 -2.6111 0.1305 26 6 10.5437 -1.9846 -1.1225 27 6 10.3400 -1.8000 1.3608 28 6 3.5753 -1.2070 -0.0031 29 6 2.1958 -1.2000 0.0013 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6522 2.1333 -0.0004 34 1 4.1116 2.1444 0.0001 35 1 5.9436 -2.0071 0.0039 36 1 8.2573 -0.6518 0.8917 37 1 8.2566 -0.6545 -0.8883 38 1 8.3017 -3.1125 1.9990 39 1 7.1733 -5.0060 0.0454 40 1 8.8309 -5.1168 0.6844 41 1 7.4717 -7.3492 1.3425 42 1 6.9333 -10.5331 2.1867 43 1 10.2834 -3.6362 0.2358 44 1 10.2684 -0.9312 -1.1747 45 1 11.6291 -2.0747 -1.0783 46 1 10.1720 -2.5016 -2.0072 47 1 9.9017 -2.2462 2.2535 48 1 11.4264 -1.8007 1.4497 49 1 9.9851 -0.7748 1.2555 50 1 4.1118 -2.1443 -0.0067 51 1 1.6522 -2.1332 0.0015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319956034.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:31 Heat of formation + Delta-G solvation = -62.876254 kcal Electronic energy + Delta-G solvation = -30205.905998 eV Core-core repulsion = 26104.332699 eV Total energy + Delta-G solvation = -4101.573299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.28763 -39.12385 -38.34644 -37.60873 -34.29107 -34.08322 -33.08824 -32.97142 -31.25780 -31.11022 -28.93843 -27.50278 -27.33209 -25.96429 -24.15640 -23.19052 -22.80264 -22.26125 -20.31109 -19.57463 -19.35131 -18.01200 -17.79060 -16.75498 -16.00203 -15.70195 -15.40544 -15.27191 -15.15040 -14.92104 -14.54859 -14.52938 -14.14276 -14.00789 -13.94164 -13.82145 -13.70063 -13.40864 -13.16489 -13.07049 -12.47564 -12.39304 -12.26879 -12.14264 -12.03607 -11.84279 -11.75528 -11.57798 -11.53087 -11.21801 -11.16127 -11.02882 -10.90595 -10.59174 -10.47545 -10.25251 -9.91308 -9.54348 -9.14096 -9.04846 -8.75206 -8.51626 -8.14548 -8.00659 -6.45958 -3.86930 0.73616 1.23514 2.84376 3.16974 3.22270 3.23203 3.27466 3.77883 3.85335 4.03688 4.26909 4.55312 4.59587 4.64805 4.68035 4.78770 4.90178 4.90858 5.07800 5.08917 5.13522 5.20708 5.22243 5.25748 5.32381 5.43915 5.48972 5.52273 5.53634 5.64858 5.74335 5.75772 5.79128 5.81584 5.85540 5.89725 5.92646 5.97514 6.13091 6.16485 6.21386 6.23188 6.24194 6.36090 6.51469 6.74600 7.11433 7.51013 7.58099 7.62535 8.01458 8.27640 8.56247 9.13417 9.49350 10.00448 10.71555 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007279 B = 0.002885 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3845.733403 B = 9703.962355 C =12962.175874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.064 4.064 3 C -0.133 4.133 4 C -0.058 4.058 5 C -0.138 4.138 6 C 0.556 3.444 7 O -0.551 6.551 8 N -0.706 5.706 9 C 0.130 3.870 10 C 0.076 3.924 11 H 0.085 0.915 12 N -0.664 5.664 13 C 0.048 3.952 14 C 0.438 3.562 15 O -0.584 6.584 16 N -0.562 5.562 17 C -0.301 4.301 18 H 0.102 0.898 19 C 0.024 3.976 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C -0.124 4.124 26 C -0.146 4.146 27 C -0.156 4.156 28 C -0.076 4.076 29 C -0.128 4.128 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.408 0.592 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.355 0.645 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.130 0.870 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.463 16.178 -10.210 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.065 4.065 3 C -0.151 4.151 4 C -0.077 4.077 5 C -0.141 4.141 6 C 0.344 3.656 7 O -0.430 6.430 8 N -0.358 5.358 9 C 0.006 3.994 10 C -0.035 4.035 11 H 0.103 0.897 12 N -0.298 5.298 13 C -0.084 4.084 14 C 0.224 3.776 15 O -0.468 6.468 16 N -0.198 5.198 17 C -0.430 4.430 18 H 0.120 0.880 19 C -0.178 4.178 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.145 4.145 26 C -0.204 4.204 27 C -0.213 4.213 28 C -0.095 4.095 29 C -0.146 4.146 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.152 0.848 35 H 0.246 0.754 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.177 0.823 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.148 0.852 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.889 17.184 -9.770 20.146 hybrid contribution 0.667 -1.674 0.376 1.841 sum -3.222 15.509 -9.394 18.417 Atomic orbital electron populations 1.20864 0.90965 1.03141 1.02539 1.20158 0.96327 0.93206 0.96784 1.21003 0.93850 0.97738 1.02513 1.21236 0.93794 0.97703 0.94999 1.19959 0.92966 0.94443 1.06780 1.18263 0.87116 0.83855 0.76400 1.90735 1.69968 1.31357 1.50975 1.45744 1.07437 1.08712 1.73872 1.21481 0.79572 0.96098 1.02251 1.21931 0.91884 0.94040 0.95683 0.89721 1.60294 1.58854 1.05773 1.04856 1.21726 0.99929 0.88259 0.98511 1.19800 0.85455 0.83052 0.89304 1.90535 1.54210 1.65955 1.36082 1.41856 1.56835 1.04628 1.16517 1.19649 1.39356 0.89449 0.94557 0.87977 1.25255 0.97546 0.96555 0.98473 1.69599 1.47893 1.07921 1.28849 0.85928 0.79509 0.77804 0.81056 1.19844 1.20959 1.19906 1.21759 0.95861 1.00642 0.96249 1.21851 1.00619 1.00990 0.96960 1.21967 1.01403 1.00428 0.97494 1.21407 0.94592 0.97316 0.96170 1.21032 0.93962 0.97926 1.01644 0.90864 0.91152 0.91341 0.85549 0.84807 0.75446 0.90908 0.91168 0.82296 0.89654 0.93648 0.77474 0.91785 0.90563 0.92289 0.92665 0.92567 0.92156 0.92467 0.91874 0.85173 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.06 -0.61 5.89 -104.53 -0.62 -1.23 16 3 C -0.13 -1.29 9.68 -39.64 -0.38 -1.68 16 4 C -0.06 -0.68 9.60 -39.19 -0.38 -1.06 16 5 C -0.14 -1.77 5.87 -104.97 -0.62 -2.38 16 6 C 0.56 8.00 7.77 -12.33 -0.10 7.90 16 7 O -0.55 -9.40 16.35 5.32 0.09 -9.32 16 8 N -0.71 -9.01 5.34 -61.25 -0.33 -9.34 16 9 C 0.13 1.54 4.67 -4.04 -0.02 1.52 16 10 C 0.08 0.84 1.95 -67.71 -0.13 0.71 16 11 H 0.08 0.88 7.88 -51.93 -0.41 0.48 16 12 N -0.66 -9.61 5.38 -107.99 -0.58 -10.19 16 13 C 0.05 0.78 5.97 -4.98 -0.03 0.75 16 14 C 0.44 9.82 7.81 -10.98 -0.09 9.73 16 15 O -0.58 -15.21 15.69 5.55 0.09 -15.13 16 16 N -0.56 -13.72 5.29 -10.96 -0.06 -13.78 16 17 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 18 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 19 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -24.03 13.05 55.50 0.72 -23.31 16 21 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 C -0.12 -1.26 2.78 -90.62 -0.25 -1.51 16 26 C -0.15 -1.25 8.83 37.16 0.33 -0.93 16 27 C -0.16 -1.61 8.50 37.16 0.32 -1.30 16 28 C -0.08 -0.87 9.54 -39.19 -0.37 -1.25 16 29 C -0.13 -1.31 9.68 -39.64 -0.38 -1.70 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.13 1.53 7.65 -52.49 -0.40 1.12 16 35 H 0.41 4.97 6.17 -40.82 -0.25 4.72 16 36 H 0.07 0.95 6.04 -51.93 -0.31 0.63 16 37 H 0.07 0.79 6.97 -51.93 -0.36 0.43 16 38 H 0.35 5.66 6.19 -39.30 -0.24 5.42 16 39 H 0.09 1.23 8.13 -51.93 -0.42 0.81 16 40 H 0.05 0.67 7.16 -51.93 -0.37 0.30 16 41 H 0.39 9.16 7.90 -40.82 -0.32 8.83 16 42 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.08 0.83 7.17 -51.93 -0.37 0.46 16 44 H 0.06 0.50 6.98 -51.93 -0.36 0.13 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.70 6.47 -51.93 -0.34 0.37 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.64 6.23 -51.93 -0.32 0.32 16 50 H 0.13 1.38 6.41 -52.49 -0.34 1.04 16 51 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 413.35 15.07 6.23 6.23 Total: -1.00 -32.17 413.35 -9.18 -41.35 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -7.71 Total: 18.43 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -2.60 Total: -0.65 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.24 Total: -56.61 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: 0.17 Total: -24.44 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.17 -9.18 -41.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319956034.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.527 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds