Wall clock time and date at job start Wed Apr 1 2020 04:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38363 * 119.84988 * 2 1 4 4 C 1.37955 * 120.14029 * 179.97438 * 3 2 1 5 5 C 1.39575 * 119.85614 * 359.97438 * 4 3 2 6 6 C 1.47847 * 120.14472 * 179.97438 * 5 4 3 7 7 O 1.21551 * 120.00206 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99949 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99910 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46794 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.47029 * 65.00396 * 10 9 8 12 12 N 1.46897 * 109.47398 * 305.00298 * 10 9 8 13 13 C 1.46904 * 110.99785 * 156.85169 * 12 10 9 14 14 C 1.50697 * 109.46933 * 176.14663 * 13 12 10 15 15 O 1.21288 * 120.00185 * 0.02562 * 14 13 12 16 16 N 1.34785 * 119.99945 * 179.97438 * 14 13 12 17 17 C 1.37096 * 119.99767 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00068 * 359.97438 * 17 16 14 19 19 C 1.38947 * 119.99622 * 180.02562 * 17 16 14 20 20 N 1.31407 * 120.00102 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47084 * 59.99796 * 21 19 17 23 23 H 1.48494 * 109.47344 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46836 * 300.00200 * 21 19 17 25 25 C 1.53003 * 109.46868 * 185.00106 * 10 9 8 26 26 C 1.53002 * 109.46982 * 294.21078 * 25 10 9 27 27 C 1.52999 * 109.46879 * 54.21133 * 25 10 9 28 28 C 1.39582 * 119.71010 * 0.24612 * 5 4 3 29 29 C 1.37949 * 119.85200 * 359.51836 * 28 5 4 30 30 H 1.08998 * 109.47277 * 90.00103 * 1 2 3 31 31 H 1.08999 * 109.46571 * 209.99663 * 1 2 3 32 32 H 1.09002 * 109.46973 * 329.99589 * 1 2 3 33 33 H 1.07994 * 119.93084 * 359.97438 * 3 2 1 34 34 H 1.08000 * 120.06979 * 179.97438 * 4 3 2 35 35 H 0.97001 * 119.99777 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.46987 * 60.00217 * 9 8 6 37 37 H 1.08999 * 109.47246 * 300.00256 * 9 8 6 38 38 H 1.00892 * 110.99815 * 280.80415 * 12 10 9 39 39 H 1.08997 * 109.46997 * 296.15031 * 13 12 10 40 40 H 1.08997 * 109.47102 * 56.14695 * 13 12 10 41 41 H 0.96999 * 119.99816 * 0.02562 * 16 14 13 42 42 H 0.97004 * 119.99799 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.47002 * 174.21078 * 25 10 9 44 44 H 1.09002 * 109.47224 * 65.56516 * 26 25 10 45 45 H 1.09001 * 109.46827 * 185.55985 * 26 25 10 46 46 H 1.09001 * 109.47549 * 305.55759 * 26 25 10 47 47 H 1.08996 * 109.47513 * 59.99790 * 27 25 10 48 48 H 1.09006 * 109.46828 * 180.02562 * 27 25 10 49 49 H 1.08997 * 109.47258 * 299.99788 * 27 25 10 50 50 H 1.08000 * 120.06981 * 179.72809 * 28 5 4 51 51 H 1.08000 * 119.93004 * 180.22921 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2001 0.0000 4 6 3.5753 1.2071 0.0005 5 6 4.2762 0.0001 0.0016 6 6 5.7547 0.0001 0.0016 7 8 6.3624 1.0528 0.0002 8 7 6.4286 -1.1670 0.0032 9 6 7.8936 -1.1670 0.0026 10 6 8.4036 -2.6095 0.0053 11 1 8.1149 -3.0987 -0.9250 12 7 7.8183 -3.3337 1.1414 13 6 7.8156 -4.7823 0.8973 14 6 7.2970 -5.4966 2.1187 15 8 6.9621 -4.8615 3.0962 16 7 7.2043 -6.8413 2.1244 17 6 6.7320 -7.4910 3.2354 18 1 6.4347 -6.9255 4.1061 19 6 6.6370 -8.8772 3.2415 20 7 6.9993 -9.5653 2.1823 21 14 5.9942 -9.7627 4.7555 22 1 4.6109 -9.3070 5.0455 23 1 5.9920 -11.2270 4.5090 24 1 6.8693 -9.4579 5.9160 25 6 9.9285 -2.6111 0.1305 26 6 10.5437 -1.9846 -1.1225 27 6 10.3400 -1.8000 1.3608 28 6 3.5753 -1.2070 -0.0031 29 6 2.1958 -1.2000 0.0013 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6522 2.1333 -0.0004 34 1 4.1116 2.1444 0.0001 35 1 5.9436 -2.0071 0.0039 36 1 8.2573 -0.6518 0.8917 37 1 8.2566 -0.6545 -0.8883 38 1 8.3017 -3.1125 1.9990 39 1 7.1733 -5.0060 0.0454 40 1 8.8309 -5.1168 0.6844 41 1 7.4717 -7.3492 1.3425 42 1 6.9333 -10.5331 2.1867 43 1 10.2834 -3.6362 0.2358 44 1 10.2684 -0.9312 -1.1747 45 1 11.6291 -2.0747 -1.0783 46 1 10.1720 -2.5016 -2.0072 47 1 9.9017 -2.2462 2.2535 48 1 11.4264 -1.8007 1.4497 49 1 9.9851 -0.7748 1.2555 50 1 4.1118 -2.1443 -0.0067 51 1 1.6522 -2.1332 0.0015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319956034.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:30 Heat of formation + Delta-G solvation = -84.443626 kcal Electronic energy + Delta-G solvation = -30206.841229 eV Core-core repulsion = 26104.332699 eV Total energy + Delta-G solvation = -4102.508530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.28620 -40.36441 -39.60557 -38.85651 -36.00359 -35.33538 -34.30038 -33.75321 -33.22043 -31.93768 -29.96388 -28.49204 -28.14283 -27.34515 -25.69236 -24.20738 -23.63602 -23.12808 -21.29222 -21.10613 -20.47591 -19.91532 -18.86378 -17.94163 -17.41566 -16.86557 -16.56755 -16.35633 -16.22002 -16.12904 -15.91839 -15.75400 -15.40086 -15.25026 -15.00098 -14.75048 -14.56665 -14.52591 -14.10748 -14.04681 -13.74945 -13.56126 -13.46026 -13.14020 -13.01780 -12.91529 -12.88746 -12.75015 -12.54261 -12.49230 -12.42312 -12.13508 -12.09643 -11.94166 -11.75963 -11.50024 -11.45900 -11.02918 -10.33293 -10.09312 -10.00379 -9.96600 -9.60790 -9.32901 -8.45985 -5.94216 -0.14535 0.40976 1.39724 1.42139 1.52372 1.84963 2.07134 2.21853 2.29458 2.87450 2.90640 3.21866 3.50132 3.72100 3.72843 3.85085 3.88822 4.00058 4.04967 4.06680 4.24810 4.32440 4.35489 4.39420 4.43520 4.48037 4.61593 4.70841 4.73285 4.77175 4.80080 4.81656 4.86588 4.89825 4.98948 5.04639 5.07574 5.20245 5.23409 5.32042 5.34585 5.38543 5.39956 5.41863 5.52730 5.59791 5.88821 5.95777 6.09330 6.34588 6.56859 6.61265 7.13909 7.20271 7.58027 8.13382 8.71031 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007279 B = 0.002885 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3845.733403 B = 9703.962355 C =12962.175874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.062 4.062 3 C -0.132 4.132 4 C -0.071 4.071 5 C -0.162 4.162 6 C 0.552 3.448 7 O -0.586 6.586 8 N -0.701 5.701 9 C 0.132 3.868 10 C 0.084 3.916 11 H 0.102 0.898 12 N -0.673 5.673 13 C 0.064 3.936 14 C 0.438 3.562 15 O -0.624 6.624 16 N -0.572 5.572 17 C -0.333 4.333 18 H 0.078 0.922 19 C -0.011 4.011 20 N -0.919 5.919 21 Si 0.989 3.011 22 H -0.272 1.272 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.119 4.119 26 C -0.142 4.142 27 C -0.154 4.154 28 C -0.083 4.083 29 C -0.137 4.137 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.153 0.847 34 H 0.129 0.871 35 H 0.412 0.588 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.345 0.655 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.042 0.958 48 H 0.066 0.934 49 H 0.062 0.938 50 H 0.133 0.867 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.320 15.899 -11.341 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.062 4.062 3 C -0.150 4.150 4 C -0.090 4.090 5 C -0.165 4.165 6 C 0.340 3.660 7 O -0.469 6.469 8 N -0.351 5.351 9 C 0.008 3.992 10 C -0.026 4.026 11 H 0.120 0.880 12 N -0.306 5.306 13 C -0.068 4.068 14 C 0.226 3.774 15 O -0.510 6.510 16 N -0.209 5.209 17 C -0.463 4.463 18 H 0.096 0.904 19 C -0.211 4.211 20 N -0.560 5.560 21 Si 0.813 3.187 22 H -0.197 1.197 23 H -0.195 1.195 24 H -0.199 1.199 25 C -0.140 4.140 26 C -0.200 4.200 27 C -0.212 4.212 28 C -0.102 4.102 29 C -0.154 4.154 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.170 0.830 34 H 0.147 0.853 35 H 0.249 0.751 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.166 0.834 39 H 0.128 0.872 40 H 0.085 0.915 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.061 0.939 48 H 0.085 0.915 49 H 0.081 0.919 50 H 0.151 0.849 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.736 16.884 -10.935 20.665 hybrid contribution 0.900 -1.517 0.721 1.906 sum -3.836 15.367 -10.214 18.846 Atomic orbital electron populations 1.20934 0.88681 1.04096 1.03663 1.20548 0.97999 0.92686 0.94988 1.21301 0.93077 0.99136 1.01484 1.21355 0.94864 0.97205 0.95589 1.19962 0.92120 0.95503 1.08902 1.18596 0.87952 0.83650 0.75769 1.90700 1.70791 1.32459 1.52931 1.45760 1.07839 1.08475 1.73056 1.21513 0.79109 0.96522 1.02075 1.21944 0.92595 0.93116 0.94927 0.88044 1.60280 1.59719 1.05008 1.05577 1.21595 1.01116 0.88453 0.95637 1.20882 0.83563 0.82434 0.90553 1.90509 1.55508 1.66677 1.38310 1.41912 1.57472 1.05475 1.16071 1.19599 1.41314 0.90223 0.95117 0.90436 1.25974 0.97279 0.96668 1.01142 1.69656 1.48017 1.08334 1.30024 0.85049 0.78761 0.77171 0.77748 1.19694 1.19546 1.19879 1.21704 0.94841 1.00551 0.96890 1.21819 1.01013 1.00939 0.96243 1.21951 1.01930 1.00295 0.96998 1.21500 0.95344 0.96943 0.96428 1.21320 0.93580 0.99172 1.01375 0.89494 0.90583 0.90066 0.82977 0.85332 0.75071 0.92250 0.90185 0.83373 0.87233 0.91508 0.76955 0.91325 0.90833 0.92231 0.91921 0.91627 0.93926 0.91470 0.91931 0.84891 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 10.01 71.24 0.71 -0.54 16 2 C -0.06 -1.06 5.89 -19.80 -0.12 -1.18 16 3 C -0.13 -2.39 9.68 22.23 0.22 -2.18 16 4 C -0.07 -1.67 9.60 22.53 0.22 -1.45 16 5 C -0.16 -4.21 5.87 -20.09 -0.12 -4.33 16 6 C 0.55 16.30 7.77 86.79 0.67 16.98 16 7 O -0.59 -20.72 16.35 -3.87 -0.06 -20.79 16 8 N -0.70 -17.93 5.34 -465.96 -2.49 -20.42 16 9 C 0.13 3.07 4.67 86.38 0.40 3.47 16 10 C 0.08 1.77 1.95 44.92 0.09 1.85 16 11 H 0.10 1.84 7.88 -2.38 -0.02 1.82 16 12 N -0.67 -19.01 5.38 -495.57 -2.67 -21.68 16 13 C 0.06 1.97 5.97 85.56 0.51 2.48 16 14 C 0.44 19.71 7.81 87.65 0.68 20.40 16 15 O -0.62 -33.26 15.69 -3.05 -0.05 -33.31 16 16 N -0.57 -28.19 5.29 -306.98 -1.62 -29.81 16 17 C -0.33 -18.47 9.68 84.04 0.81 -17.65 16 18 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 19 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 20 N -0.92 -48.55 13.05 21.66 0.28 -48.26 16 21 Si 0.99 42.24 29.55 68.60 2.03 44.26 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 25 C -0.12 -2.22 2.78 -10.79 -0.03 -2.25 16 26 C -0.14 -2.13 8.83 71.98 0.64 -1.49 16 27 C -0.15 -3.12 8.50 71.98 0.61 -2.51 16 28 C -0.08 -1.90 9.54 22.53 0.21 -1.68 16 29 C -0.14 -2.65 9.68 22.23 0.22 -2.43 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 32 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 33 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 34 H 0.13 3.05 7.65 -2.91 -0.02 3.03 16 35 H 0.41 9.92 6.17 -92.71 -0.57 9.35 16 36 H 0.06 1.57 6.04 -2.39 -0.01 1.55 16 37 H 0.08 1.74 6.97 -2.39 -0.02 1.72 16 38 H 0.35 11.10 6.19 -89.70 -0.55 10.54 16 39 H 0.11 2.90 8.13 -2.39 -0.02 2.88 16 40 H 0.07 1.82 7.16 -2.39 -0.02 1.80 16 41 H 0.40 18.50 7.90 -92.71 -0.73 17.77 16 42 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 43 H 0.07 1.45 7.17 -2.39 -0.02 1.43 16 44 H 0.06 0.89 6.98 -2.39 -0.02 0.88 16 45 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.04 1.01 6.47 -2.39 -0.02 0.99 16 48 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 49 H 0.06 1.26 6.23 -2.39 -0.01 1.25 16 50 H 0.13 2.81 6.41 -2.91 -0.02 2.79 16 51 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -70.73 413.35 0.74 -69.99 By element: Atomic # 1 Polarization: 53.52 SS G_CDS: -0.88 Total: 52.64 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 6.20 Total: 7.38 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -6.49 Total: -120.17 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -0.11 Total: -54.10 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -70.73 0.74 -69.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319956034.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.450 kcal (2) G-P(sol) polarization free energy of solvation -70.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds