Wall clock time and date at job start Wed Apr 1 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31696 * 119.72158 * 2 1 4 4 C 1.31925 * 121.88073 * 180.31355 * 3 2 1 5 5 C 1.50703 * 119.45562 * 179.70585 * 4 3 2 6 6 C 1.52999 * 109.46837 * 264.72406 * 5 4 3 7 7 C 1.53002 * 109.46855 * 144.72892 * 5 4 3 8 8 C 1.38347 * 121.07727 * 359.43074 * 4 3 2 9 9 C 1.38353 * 119.30740 * 0.27435 * 8 4 3 10 10 C 1.39531 * 119.71577 * 179.74823 * 2 1 3 11 11 C 1.47835 * 120.55428 * 359.97438 * 10 2 1 12 12 O 1.21554 * 120.00393 * 54.28134 * 11 10 2 13 13 N 1.34777 * 119.99690 * 234.27136 * 11 10 2 14 14 C 1.47151 * 120.98515 * 5.59493 * 13 11 10 15 15 C 1.53295 * 108.38794 * 129.43779 * 14 13 11 16 16 O 1.42966 * 109.22340 * 52.30160 * 15 14 13 17 17 C 1.42963 * 114.16765 * 297.42574 * 16 15 14 18 18 H 1.09005 * 109.50789 * 302.65257 * 17 16 15 19 19 C 1.52994 * 109.51229 * 182.55441 * 17 16 15 20 20 N 1.46500 * 109.47478 * 64.99411 * 19 17 16 21 21 C 1.36940 * 120.00306 * 179.97438 * 20 19 17 22 22 H 1.07998 * 119.99879 * 0.02562 * 21 20 19 23 23 C 1.38810 * 120.00163 * 180.02562 * 21 20 19 24 24 N 1.31617 * 119.99887 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00101 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47099 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47141 * 120.00041 * 25 23 21 28 28 H 1.48499 * 109.47204 * 240.00380 * 25 23 21 29 29 C 1.47160 * 120.98250 * 185.30827 * 13 11 10 30 30 H 1.09003 * 109.46788 * 275.08691 * 1 2 3 31 31 H 1.09001 * 109.47312 * 35.08196 * 1 2 3 32 32 H 1.08994 * 109.47609 * 155.08755 * 1 2 3 33 33 H 1.08996 * 109.47298 * 24.73121 * 5 4 3 34 34 H 1.08996 * 109.47761 * 300.00432 * 6 5 4 35 35 H 1.09007 * 109.46734 * 180.02562 * 6 5 4 36 36 H 1.09001 * 109.46918 * 60.00933 * 6 5 4 37 37 H 1.08995 * 109.47274 * 179.97438 * 7 5 4 38 38 H 1.09004 * 109.47295 * 299.99980 * 7 5 4 39 39 H 1.09002 * 109.47324 * 59.99755 * 7 5 4 40 40 H 1.08010 * 120.34335 * 180.29730 * 8 4 3 41 41 H 1.07999 * 120.85731 * 179.97438 * 9 8 4 42 42 H 1.08997 * 109.68196 * 249.16392 * 14 13 11 43 43 H 1.09004 * 109.68018 * 9.71745 * 14 13 11 44 44 H 1.08999 * 109.51749 * 172.22784 * 15 14 13 45 45 H 1.09005 * 109.51386 * 292.38342 * 15 14 13 46 46 H 1.09004 * 109.47120 * 184.99817 * 19 17 16 47 47 H 1.08998 * 109.47081 * 304.99400 * 19 17 16 48 48 H 0.97002 * 119.99821 * 0.02562 * 20 19 17 49 49 H 0.97002 * 120.00329 * 180.02562 * 24 23 21 50 50 H 1.09003 * 109.67851 * 350.28770 * 29 13 11 51 51 H 1.08996 * 109.68213 * 110.83765 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1934 -0.0061 5 6 4.1693 2.5326 -0.0125 6 6 4.5144 2.9215 -1.4515 7 6 5.4535 2.4477 0.8148 8 6 4.2365 0.0363 -0.0011 9 6 3.5986 -1.1914 0.0048 10 6 2.1986 -1.2118 0.0053 11 6 1.4655 -2.4956 0.0115 12 8 0.6300 -2.7226 -0.8417 13 7 1.7236 -3.4143 0.9632 14 6 2.6397 -3.1161 2.0755 15 6 1.9389 -3.4789 3.3897 16 8 1.4536 -4.8213 3.3094 17 6 0.4714 -5.0287 2.2915 18 1 -0.3695 -4.3545 2.4544 19 6 -0.0180 -6.4774 2.3413 20 7 -0.7165 -6.7138 3.6072 21 6 -1.2458 -7.9475 3.8772 22 1 -1.1481 -8.7464 3.1570 23 6 -1.9081 -8.1713 5.0764 24 7 -2.0276 -7.1975 5.9538 25 14 -2.6296 -9.8544 5.4450 26 1 -2.3612 -10.7683 4.3057 27 1 -2.0049 -10.4020 6.6760 28 1 -4.0957 -9.7312 5.6465 29 6 1.0927 -4.7432 0.9242 30 1 -0.3633 0.0911 1.0237 31 1 -0.3634 0.8410 -0.5906 32 1 -0.3634 -0.9320 -0.4328 33 1 3.5084 3.2846 0.4186 34 1 5.1753 2.1695 -1.8826 35 1 5.0147 3.8900 -1.4560 36 1 3.5995 2.9820 -2.0408 37 1 5.9536 3.4161 0.8099 38 1 5.2077 2.1706 1.8400 39 1 6.1144 1.6957 0.3838 40 1 5.3152 0.0908 -0.0014 41 1 4.1659 -2.1104 0.0084 42 1 3.5499 -3.7063 1.9697 43 1 2.8874 -2.0546 2.0725 44 1 2.6466 -3.3964 4.2146 45 1 1.1033 -2.7992 3.5565 46 1 -0.6999 -6.6592 1.5106 47 1 0.8349 -7.1518 2.2655 48 1 -0.8046 -5.9961 4.2538 49 1 -2.4901 -7.3540 6.7920 50 1 0.3165 -4.7588 0.1591 51 1 1.8445 -5.5001 0.7005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327033062.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:02 Heat of formation + Delta-G solvation = -56.064807 kcal Electronic energy + Delta-G solvation = -30826.599948 eV Core-core repulsion = 26725.322015 eV Total energy + Delta-G solvation = -4101.277932 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.20101 -40.95783 -39.51270 -36.75287 -36.69671 -35.90221 -34.16438 -33.79619 -32.67717 -31.82195 -29.62229 -28.80075 -27.92982 -27.25609 -25.65144 -24.97498 -23.95419 -23.48796 -22.46808 -21.42249 -20.57181 -19.25724 -18.65230 -18.14738 -17.76654 -17.28511 -16.97720 -16.66908 -16.46132 -16.01780 -15.76086 -15.64659 -15.58162 -15.11975 -15.03947 -14.96310 -14.53746 -14.46641 -14.12285 -14.07080 -14.01933 -13.69805 -13.53685 -13.24723 -13.20227 -13.03877 -12.82754 -12.81140 -12.66155 -12.28859 -12.23595 -12.04807 -12.03602 -11.88771 -11.86955 -11.66071 -11.27486 -11.17839 -10.98000 -10.86474 -10.50005 -9.91065 -9.70785 -9.01641 -7.94688 -5.24309 -0.33176 0.13107 1.35741 1.47770 1.49169 1.59348 1.67115 2.56026 2.56460 2.70311 2.97156 3.24861 3.39470 3.51505 3.56238 3.62917 3.84873 3.88909 3.96064 4.00239 4.06555 4.13343 4.16825 4.26597 4.27470 4.39244 4.46527 4.48356 4.52983 4.55848 4.60422 4.62700 4.69786 4.79054 4.81994 4.86906 4.92492 4.93750 4.96973 5.04346 5.07338 5.07740 5.18219 5.22761 5.36836 5.44125 5.48749 5.56439 6.09446 6.18504 6.26698 6.82952 6.87028 7.32814 8.06477 8.30834 9.29285 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.002031 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.880902 B =13785.361787 C =14047.820318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.167 3.833 3 N -0.505 5.505 4 C 0.152 3.848 5 C -0.050 4.050 6 C -0.139 4.139 7 C -0.145 4.145 8 C -0.170 4.170 9 C -0.032 4.032 10 C -0.201 4.201 11 C 0.572 3.428 12 O -0.565 6.565 13 N -0.604 5.604 14 C 0.077 3.923 15 C 0.039 3.961 16 O -0.384 6.384 17 C 0.087 3.913 18 H 0.044 0.956 19 C 0.161 3.839 20 N -0.741 5.741 21 C -0.245 4.245 22 H 0.080 0.920 23 C -0.079 4.079 24 N -0.970 5.970 25 Si 0.978 3.022 26 H -0.264 1.264 27 H -0.293 1.293 28 H -0.293 1.293 29 C 0.095 3.905 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.178 0.822 41 H 0.164 0.836 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.130 0.870 45 H 0.044 0.956 46 H 0.045 0.955 47 H 0.034 0.966 48 H 0.374 0.626 49 H 0.251 0.749 50 H 0.095 0.905 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.528 21.625 -13.656 32.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.029 3.971 3 N -0.215 5.215 4 C 0.014 3.986 5 C -0.069 4.069 6 C -0.196 4.196 7 C -0.202 4.202 8 C -0.189 4.189 9 C -0.058 4.058 10 C -0.206 4.206 11 C 0.361 3.639 12 O -0.444 6.444 13 N -0.336 5.336 14 C -0.045 4.045 15 C -0.038 4.038 16 O -0.302 6.302 17 C 0.028 3.972 18 H 0.062 0.938 19 C 0.034 3.966 20 N -0.384 5.384 21 C -0.377 4.377 22 H 0.098 0.902 23 C -0.271 4.271 24 N -0.621 5.621 25 Si 0.806 3.194 26 H -0.188 1.188 27 H -0.220 1.220 28 H -0.221 1.221 29 C -0.028 4.028 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.195 0.805 41 H 0.182 0.818 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.148 0.852 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.206 0.794 49 H 0.060 0.940 50 H 0.113 0.887 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 19.647 21.934 -14.042 32.624 hybrid contribution -0.728 -1.221 0.583 1.536 sum 18.920 20.714 -13.459 31.115 Atomic orbital electron populations 1.20942 0.88640 1.04476 1.03720 1.21353 0.97236 0.86984 0.91547 1.67426 1.10806 1.28356 1.14893 1.21976 0.88660 0.97284 0.90724 1.20205 0.97182 0.91087 0.98401 1.21793 1.01349 1.02811 0.93679 1.21932 0.95249 1.03806 0.99211 1.22246 1.03326 0.91064 1.02312 1.21986 0.91401 1.00483 0.91917 1.20558 0.95946 0.93240 1.10835 1.18420 0.81480 0.83363 0.80682 1.90753 1.34985 1.79198 1.39496 1.48152 1.46031 1.13860 1.25576 1.22722 0.93122 1.03781 0.84840 1.23188 0.98881 0.83433 0.98291 1.88108 1.57904 1.28968 1.55258 1.22388 0.90092 0.97247 0.87483 0.93758 1.20765 0.94725 0.92164 0.88971 1.42435 1.66414 1.11438 1.18082 1.19713 1.27004 0.90051 1.00915 0.90233 1.25633 1.02772 1.01593 0.97060 1.69848 1.49237 1.33290 1.09733 0.85011 0.77236 0.79377 0.77743 1.18814 1.21979 1.22053 1.22087 0.99465 0.83877 0.97357 0.89815 0.89462 0.90470 0.89995 0.91619 0.90029 0.93989 0.90410 0.92563 0.90577 0.80519 0.81813 0.87703 0.87279 0.85234 0.93789 0.93758 0.94773 0.79427 0.94031 0.88657 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 9.88 71.23 0.70 -2.14 16 2 C 0.17 3.92 6.82 42.89 0.29 4.21 16 3 N -0.51 -11.03 10.17 -171.05 -1.74 -12.77 16 4 C 0.15 2.39 5.79 42.57 0.25 2.64 16 5 C -0.05 -0.53 3.23 -11.54 -0.04 -0.57 16 6 C -0.14 -1.25 9.17 71.98 0.66 -0.59 16 7 C -0.14 -0.82 8.61 71.98 0.62 -0.20 16 8 C -0.17 -1.99 9.16 22.32 0.20 -1.79 16 9 C -0.03 -0.46 8.03 22.73 0.18 -0.28 16 10 C -0.20 -4.35 4.59 -19.99 -0.09 -4.44 16 11 C 0.57 15.15 6.56 86.78 0.57 15.72 16 12 O -0.56 -19.01 14.56 -3.89 -0.06 -19.07 16 13 N -0.60 -14.54 3.03 -821.56 -2.49 -17.02 16 14 C 0.08 1.39 5.79 86.35 0.50 1.89 16 15 C 0.04 0.93 6.99 72.08 0.50 1.43 16 16 O -0.38 -13.03 10.33 -148.98 -1.54 -14.57 16 17 C 0.09 2.97 2.80 30.55 0.09 3.05 16 18 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 19 C 0.16 6.59 5.93 86.38 0.51 7.10 16 20 N -0.74 -39.31 5.55 -343.46 -1.91 -41.21 16 21 C -0.25 -14.06 9.99 84.03 0.84 -13.22 16 22 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 23 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 24 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 25 Si 0.98 46.97 29.55 68.60 2.03 49.00 16 26 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 29 C 0.10 2.62 5.92 86.21 0.51 3.13 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 2.13 5.53 -2.39 -0.01 2.11 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.08 0.22 6.48 -2.39 -0.02 0.20 16 40 H 0.18 0.82 6.29 -2.91 -0.02 0.80 16 41 H 0.16 1.55 7.84 -2.91 -0.02 1.52 16 42 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.11 1.57 5.62 -2.38 -0.01 1.56 16 44 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 46 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 47 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.37 21.43 7.67 -92.71 -0.71 20.72 16 49 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 50 H 0.10 2.82 7.06 -2.39 -0.02 2.80 16 51 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -76.71 407.09 1.58 -75.13 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.22 Total: 29.43 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 6.77 Total: 11.79 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -5.85 Total: -131.72 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -1.60 Total: -33.64 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -76.71 1.58 -75.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327033062.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.070 kcal (2) G-P(sol) polarization free energy of solvation -76.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds