Wall clock time and date at job start Wed Apr 1 2020 04:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37957 * 120.06993 * 2 1 4 4 C 1.38360 * 120.14382 * 179.74655 * 3 2 1 5 5 C 1.38366 * 120.29302 * 0.27966 * 4 3 2 6 6 C 1.37955 * 120.14134 * 359.95571 * 5 4 3 7 7 C 1.50704 * 120.07323 * 180.02562 * 6 5 4 8 8 C 1.39576 * 120.07437 * 180.23300 * 2 1 3 9 9 C 1.47837 * 120.14496 * 0.02562 * 8 2 1 10 10 O 1.21555 * 119.99948 * 270.22938 * 9 8 2 11 11 N 1.34783 * 120.00157 * 90.23113 * 9 8 2 12 12 C 1.46502 * 119.99911 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47171 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47299 * 179.97438 * 13 12 11 15 15 H 1.08996 * 109.47019 * 304.99761 * 14 13 12 16 16 C 1.53001 * 109.46817 * 184.99696 * 14 13 12 17 17 N 1.46902 * 109.46918 * 64.99907 * 14 13 12 18 18 C 1.46897 * 110.99605 * 205.00046 * 17 14 13 19 19 C 1.50702 * 109.46933 * 179.97438 * 18 17 14 20 20 O 1.21291 * 119.99995 * 359.97438 * 19 18 17 21 21 N 1.34781 * 119.99848 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99788 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99857 * 0.02562 * 22 21 19 24 24 C 1.38946 * 119.99987 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00465 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99893 * 0.02562 * 24 22 21 27 27 H 1.48505 * 109.46969 * 89.99960 * 26 24 22 28 28 H 1.48507 * 109.47196 * 209.99785 * 26 24 22 29 29 H 1.48495 * 109.47158 * 329.99792 * 26 24 22 30 30 H 1.08994 * 109.46799 * 89.99624 * 1 2 3 31 31 H 1.08994 * 109.46726 * 209.99869 * 1 2 3 32 32 H 1.08995 * 109.47128 * 329.99791 * 1 2 3 33 33 H 1.08002 * 119.93252 * 0.03110 * 3 2 1 34 34 H 1.08001 * 119.85601 * 180.25892 * 4 3 2 35 35 H 1.07992 * 119.92771 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.47190 * 90.00112 * 7 6 5 37 37 H 1.09004 * 109.47366 * 210.00157 * 7 6 5 38 38 H 1.09001 * 109.46832 * 330.00176 * 7 6 5 39 39 H 0.96995 * 120.00159 * 359.97438 * 11 9 8 40 40 H 1.09000 * 109.46711 * 299.99565 * 12 11 9 41 41 H 1.09000 * 109.47191 * 59.99407 * 12 11 9 42 42 H 1.08999 * 109.46758 * 299.99923 * 13 12 11 43 43 H 1.09000 * 109.47599 * 59.99594 * 13 12 11 44 44 H 1.08996 * 109.47379 * 299.99844 * 16 14 13 45 45 H 1.08996 * 109.47329 * 60.00551 * 16 14 13 46 46 H 1.08999 * 109.46365 * 180.02562 * 16 14 13 47 47 H 1.00899 * 111.00052 * 328.95012 * 17 14 13 48 48 H 1.09001 * 109.47339 * 299.99638 * 18 17 14 49 49 H 1.09004 * 109.47400 * 60.00319 * 18 17 14 50 50 H 0.96994 * 119.99907 * 359.97438 * 21 19 18 51 51 H 0.97000 * 120.00356 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1939 0.0000 4 6 3.5819 1.1957 0.0053 5 6 4.2814 0.0019 0.0048 6 6 3.6023 -1.1989 -0.0001 7 6 4.3657 -2.4983 -0.0001 8 6 2.2065 -1.2078 -0.0049 9 6 1.4722 -2.4910 -0.0107 10 8 1.1663 -3.0209 1.0396 11 7 1.1420 -3.0732 -1.1806 12 6 0.4139 -4.3445 -1.1862 13 6 0.1668 -4.7842 -2.6307 14 6 -0.5931 -6.1122 -2.6366 15 1 -0.0454 -6.8468 -2.0463 16 6 -0.7310 -6.6143 -4.0753 17 7 -1.9282 -5.9149 -2.0566 18 6 -2.4517 -7.1702 -1.5015 19 6 -3.8193 -6.9289 -0.9163 20 8 -4.3095 -5.8202 -0.9573 21 7 -4.4973 -7.9449 -0.3465 22 6 -5.7413 -7.7253 0.1863 23 1 -6.1781 -6.7383 0.1490 24 6 -6.4405 -8.7728 0.7732 25 7 -7.6331 -8.5625 1.2835 26 14 -5.6852 -10.4801 0.8369 27 1 -4.9025 -10.6287 2.0902 28 1 -6.7640 -11.5002 0.8032 29 1 -4.7889 -10.6688 -0.3319 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.6583 2.1292 0.0005 34 1 4.1183 2.1331 0.0095 35 1 5.3613 0.0102 0.0085 36 1 4.5461 -2.8137 1.0276 37 1 3.7843 -3.2614 -0.5176 38 1 5.3189 -2.3596 -0.5102 39 1 1.3858 -2.6502 -2.0187 40 1 1.0036 -5.1032 -0.6717 41 1 -0.5410 -4.2185 -0.6759 42 1 -0.4226 -4.0256 -3.1456 43 1 1.1219 -4.9103 -3.1406 44 1 -1.2787 -5.8797 -4.6656 45 1 0.2596 -6.7608 -4.5056 46 1 -1.2728 -7.5602 -4.0795 47 1 -1.9148 -5.1880 -1.3570 48 1 -2.5212 -7.9165 -2.2929 49 1 -1.7812 -7.5298 -0.7209 50 1 -4.1051 -8.8314 -0.3135 51 1 -8.1210 -9.2937 1.6935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328412510.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:07 Heat of formation + Delta-G solvation = -85.655719 kcal Electronic energy + Delta-G solvation = -29761.643267 eV Core-core repulsion = 25659.082177 eV Total energy + Delta-G solvation = -4102.561091 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.53855 -40.40323 -39.58318 -38.39105 -36.12342 -35.75169 -34.62548 -33.79199 -33.28560 -32.47776 -30.05117 -28.61246 -28.20626 -27.63916 -25.77424 -24.88750 -23.44040 -21.77383 -21.73366 -21.34893 -21.05332 -20.29518 -18.72036 -17.87867 -17.43851 -17.29542 -16.91966 -16.75530 -16.50295 -16.39266 -15.65413 -15.54903 -15.43414 -15.00069 -14.93092 -14.67071 -14.48179 -14.42388 -14.24542 -14.16962 -13.95766 -13.94622 -13.68721 -13.41285 -13.18938 -12.93927 -12.92323 -12.62620 -12.59546 -12.47433 -12.43720 -12.29758 -12.20095 -12.02927 -11.98315 -11.76890 -11.53605 -11.05223 -10.45929 -10.27130 -10.25873 -9.81194 -9.58938 -9.34127 -8.43112 -6.04213 0.12208 0.34334 1.28369 1.34052 1.42098 1.42976 1.93059 2.06565 2.21402 2.65904 2.71395 3.12989 3.38325 3.59029 3.73781 3.78893 3.79827 3.95487 4.01609 4.08402 4.14185 4.33759 4.36312 4.39205 4.44663 4.48154 4.50513 4.57415 4.60997 4.64235 4.65596 4.71895 4.79324 4.86542 4.95240 4.99770 5.02218 5.09451 5.18350 5.21091 5.29071 5.43618 5.47963 5.48102 5.51777 5.52772 5.89621 5.96304 6.07759 6.36674 6.38221 6.57702 6.85744 7.07277 7.37216 7.93900 8.74583 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014780 B = 0.001955 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.965853 B =14318.046127 C =15054.348531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.061 4.061 3 C -0.132 4.132 4 C -0.092 4.092 5 C -0.129 4.129 6 C -0.059 4.059 7 C -0.120 4.120 8 C -0.153 4.153 9 C 0.567 3.433 10 O -0.583 6.583 11 N -0.705 5.705 12 C 0.115 3.885 13 C -0.118 4.118 14 C 0.084 3.916 15 H 0.058 0.942 16 C -0.136 4.136 17 N -0.684 5.684 18 C 0.061 3.939 19 C 0.446 3.554 20 O -0.615 6.615 21 N -0.591 5.591 22 C -0.330 4.330 23 H 0.054 0.946 24 C -0.017 4.017 25 N -0.934 5.934 26 Si 0.966 3.034 27 H -0.258 1.258 28 H -0.273 1.273 29 H -0.230 1.230 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.148 0.852 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.416 0.584 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.080 0.920 43 H 0.110 0.890 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.050 0.950 47 H 0.340 0.660 48 H 0.115 0.885 49 H 0.073 0.927 50 H 0.390 0.610 51 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.131 12.709 -10.222 36.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.062 4.062 3 C -0.149 4.149 4 C -0.110 4.110 5 C -0.147 4.147 6 C -0.060 4.060 7 C -0.177 4.177 8 C -0.156 4.156 9 C 0.354 3.646 10 O -0.463 6.463 11 N -0.357 5.357 12 C -0.009 4.009 13 C -0.156 4.156 14 C -0.025 4.025 15 H 0.076 0.924 16 C -0.194 4.194 17 N -0.319 5.319 18 C -0.072 4.072 19 C 0.234 3.766 20 O -0.499 6.499 21 N -0.232 5.232 22 C -0.459 4.459 23 H 0.072 0.928 24 C -0.215 4.215 25 N -0.574 5.574 26 Si 0.786 3.214 27 H -0.183 1.183 28 H -0.198 1.198 29 H -0.153 1.153 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.166 0.834 34 H 0.175 0.825 35 H 0.172 0.828 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.254 0.746 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.128 0.872 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.069 0.931 47 H 0.161 0.839 48 H 0.133 0.867 49 H 0.091 0.909 50 H 0.225 0.775 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 31.064 12.906 -10.030 35.102 hybrid contribution -0.294 -0.852 1.153 1.463 sum 30.770 12.055 -8.877 34.218 Atomic orbital electron populations 1.20899 0.90914 1.02852 1.03344 1.20061 0.96208 0.92288 0.97634 1.21271 0.95070 0.97296 1.01302 1.21682 0.93915 0.99357 0.96060 1.21306 1.01372 0.90952 1.01056 1.20112 0.91177 0.97349 0.97316 1.20906 1.00850 0.93092 1.02809 1.19666 0.94334 0.92173 1.09413 1.18648 0.77767 0.84549 0.83589 1.90811 1.56119 1.65877 1.33457 1.45897 1.57383 1.23813 1.08569 1.21431 0.95536 0.85098 0.98876 1.21900 1.02322 0.97281 0.94082 1.21632 0.86943 0.96668 0.97279 0.92387 1.21781 1.02432 1.00942 0.94235 1.60253 1.25246 1.06918 1.39511 1.21691 0.91234 0.94516 0.99711 1.21040 0.89158 0.84538 0.81818 1.90539 1.71662 1.25643 1.62091 1.42035 1.16485 1.10820 1.53910 1.19004 0.93472 0.97630 1.35772 0.92792 1.26148 0.95913 1.03917 0.95540 1.69805 1.13695 1.35088 1.38849 0.85352 0.79170 0.76323 0.80599 1.18278 1.19791 1.15348 0.89488 0.94231 0.89343 0.83400 0.82535 0.82830 0.91350 0.92403 0.88218 0.74643 0.91707 0.93965 0.90130 0.87205 0.92802 0.89897 0.93078 0.83940 0.86682 0.90934 0.77469 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 9.62 71.24 0.69 -1.71 16 2 C -0.06 -1.17 5.91 -19.61 -0.12 -1.29 16 3 C -0.13 -1.80 9.69 22.23 0.22 -1.58 16 4 C -0.09 -0.99 10.04 22.33 0.22 -0.76 16 5 C -0.13 -1.53 9.69 22.23 0.22 -1.32 16 6 C -0.06 -0.98 5.91 -19.61 -0.12 -1.10 16 7 C -0.12 -1.67 9.62 71.24 0.69 -0.99 16 8 C -0.15 -3.24 5.63 -20.09 -0.11 -3.36 16 9 C 0.57 14.58 4.19 86.78 0.36 14.94 16 10 O -0.58 -20.94 17.10 -3.89 -0.07 -21.01 16 11 N -0.71 -13.54 5.55 -465.97 -2.59 -16.13 16 12 C 0.11 2.40 5.50 86.38 0.48 2.87 16 13 C -0.12 -1.81 4.92 30.59 0.15 -1.66 16 14 C 0.08 1.63 2.65 44.92 0.12 1.75 16 15 H 0.06 1.02 7.80 -2.39 -0.02 1.00 16 16 C -0.14 -2.29 9.42 71.98 0.68 -1.62 16 17 N -0.68 -20.39 5.93 -495.56 -2.94 -23.33 16 18 C 0.06 1.94 5.96 85.56 0.51 2.45 16 19 C 0.45 21.03 7.82 87.66 0.69 21.72 16 20 O -0.61 -35.48 15.78 -3.06 -0.05 -35.53 16 21 N -0.59 -28.91 5.09 -306.98 -1.56 -30.47 16 22 C -0.33 -19.92 10.16 84.04 0.85 -19.07 16 23 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 24 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 25 N -0.93 -57.55 13.96 21.66 0.30 -57.25 16 26 Si 0.97 39.80 27.74 68.60 1.90 41.70 16 27 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 29 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.04 1.02 7.08 -2.39 -0.02 1.00 16 32 H 0.09 1.40 8.09 -2.39 -0.02 1.38 16 33 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.16 0.70 8.06 -2.91 -0.02 0.67 16 35 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 0.89 7.08 -2.38 -0.02 0.87 16 38 H 0.10 0.80 8.09 -2.39 -0.02 0.78 16 39 H 0.42 5.41 8.46 -92.71 -0.78 4.62 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.04 1.17 6.43 -2.39 -0.02 1.16 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 43 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.05 0.93 7.45 -2.39 -0.02 0.91 16 47 H 0.34 11.37 6.17 -89.69 -0.55 10.82 16 48 H 0.12 3.08 7.44 -2.39 -0.02 3.07 16 49 H 0.07 1.95 8.06 -2.38 -0.02 1.93 16 50 H 0.39 15.78 5.76 -92.71 -0.53 15.25 16 51 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -87.79 418.88 0.01 -87.78 By element: Atomic # 1 Polarization: 46.40 SS G_CDS: -0.97 Total: 45.43 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 5.98 Total: 8.81 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -6.79 Total: -127.18 kcal Atomic # 8 Polarization: -56.42 SS G_CDS: -0.11 Total: -56.54 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.90 Total: 41.70 kcal Total: -87.79 0.01 -87.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328412510.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.125 kcal (2) G-P(sol) polarization free energy of solvation -87.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds