Wall clock time and date at job start Wed Apr 1 2020 04:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38252 * 119.99964 * 2 1 4 4 C 1.38217 * 120.00077 * 180.23117 * 3 2 1 5 5 C 1.38263 * 119.99610 * 359.81276 * 4 3 2 6 6 C 1.38206 * 120.00328 * 359.97438 * 5 4 3 7 7 C 1.38214 * 119.99847 * 179.79335 * 2 1 3 8 8 C 1.50701 * 120.00474 * 359.97438 * 7 2 1 9 9 C 1.50694 * 109.47131 * 84.72423 * 8 7 2 10 10 O 1.21288 * 120.00157 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00308 * 180.02562 * 9 8 7 12 12 C 1.46507 * 120.00528 * 180.27677 * 11 9 8 13 13 C 1.53001 * 109.47252 * 177.07982 * 12 11 9 14 14 H 1.09000 * 109.46993 * 185.67478 * 13 12 11 15 15 C 1.52995 * 109.47113 * 65.67695 * 13 12 11 16 16 N 1.46898 * 109.47127 * 305.67197 * 13 12 11 17 17 C 1.46901 * 111.00626 * 304.07790 * 16 13 12 18 18 C 1.46896 * 111.00075 * 180.11687 * 16 13 12 19 19 C 1.50696 * 109.47761 * 190.00280 * 18 16 13 20 20 O 1.21294 * 119.99543 * 0.02562 * 19 18 16 21 21 N 1.34769 * 120.00513 * 180.02562 * 19 18 16 22 22 C 1.37099 * 120.00106 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00273 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99909 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00114 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00138 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47095 * 59.99919 * 26 24 22 28 28 H 1.48493 * 109.47400 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46908 * 300.00159 * 26 24 22 30 30 H 1.08993 * 109.47170 * 270.20735 * 1 2 3 31 31 H 1.09004 * 109.47388 * 30.20825 * 1 2 3 32 32 H 1.09004 * 109.46856 * 150.21026 * 1 2 3 33 33 H 1.08001 * 120.00294 * 0.06477 * 3 2 1 34 34 H 1.07998 * 120.00257 * 179.83557 * 4 3 2 35 35 H 1.08002 * 119.99724 * 179.97438 * 5 4 3 36 36 H 1.07994 * 120.00271 * 179.97438 * 6 5 4 37 37 H 1.09009 * 109.46783 * 324.73088 * 8 7 2 38 38 H 1.08994 * 109.47395 * 204.72957 * 8 7 2 39 39 H 0.97004 * 119.99699 * 0.02562 * 11 9 8 40 40 H 1.08995 * 109.46670 * 297.08495 * 12 11 9 41 41 H 1.09002 * 109.46609 * 57.07854 * 12 11 9 42 42 H 1.09001 * 109.47380 * 59.99478 * 15 13 12 43 43 H 1.08999 * 109.47170 * 179.97438 * 15 13 12 44 44 H 1.09000 * 109.47014 * 299.99770 * 15 13 12 45 45 H 1.09001 * 109.47183 * 66.55504 * 17 16 13 46 46 H 1.08993 * 109.47153 * 186.55643 * 17 16 13 47 47 H 1.09001 * 109.46658 * 306.56270 * 17 16 13 48 48 H 1.09003 * 109.47519 * 310.00619 * 18 16 13 49 49 H 1.09005 * 109.46932 * 70.00559 * 18 16 13 50 50 H 0.97003 * 119.99912 * 359.97438 * 21 19 18 51 51 H 0.97004 * 120.00558 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2717 -0.0001 -0.0057 6 6 3.5807 -1.1970 -0.0013 7 6 2.1980 -1.1970 0.0043 8 6 1.4446 -2.5021 0.0096 9 6 1.0798 -2.8773 -1.4036 10 8 1.4005 -2.1561 -2.3245 11 7 0.3972 -4.0141 -1.6442 12 6 0.0478 -4.3819 -3.0186 13 6 -0.6547 -5.7412 -3.0199 14 1 -0.8244 -6.0614 -4.0479 15 6 -1.9966 -5.6224 -2.2947 16 7 0.1880 -6.7285 -2.3323 17 6 1.5219 -6.7994 -2.9437 18 6 -0.4547 -8.0493 -2.3165 19 6 0.3108 -8.9698 -1.4013 20 8 1.2948 -8.5651 -0.8189 21 7 -0.0979 -10.2425 -1.2297 22 6 0.5989 -11.0800 -0.3974 23 1 1.4751 -10.7197 0.1211 24 6 0.1772 -12.3920 -0.2202 25 7 -0.8892 -12.8303 -0.8507 26 14 1.1262 -13.5329 0.9143 27 1 1.1344 -12.9700 2.2885 28 1 0.4768 -14.8683 0.9298 29 1 2.5222 -13.6676 0.4262 30 1 -0.3633 0.0037 1.0276 31 1 -0.3634 0.8881 -0.5171 32 1 -0.3633 -0.8919 -0.5106 33 1 1.6583 2.1326 0.0011 34 1 4.1204 2.1326 -0.0075 35 1 5.3517 -0.0001 -0.0099 36 1 4.1206 -2.1323 -0.0024 37 1 0.5365 -2.3950 0.6030 38 1 2.0714 -3.2818 0.4422 39 1 0.1404 -4.5908 -0.9076 40 1 -0.6184 -3.6282 -3.4382 41 1 0.9546 -4.4410 -3.6206 42 1 -2.6218 -4.8897 -2.8050 43 1 -2.4972 -6.5906 -2.2961 44 1 -1.8269 -5.3022 -1.2667 45 1 2.0484 -5.8597 -2.7768 46 1 2.0851 -7.6165 -2.4930 47 1 1.4216 -6.9744 -4.0149 48 1 -1.4795 -7.9506 -1.9583 49 1 -0.4607 -8.4626 -3.3252 50 1 -0.8851 -10.5660 -1.6952 51 1 -1.1834 -13.7464 -0.7274 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329614216.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:23 Heat of formation + Delta-G solvation = -45.634687 kcal Electronic energy + Delta-G solvation = -30321.508641 eV Core-core repulsion = 26220.682992 eV Total energy + Delta-G solvation = -4100.825649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.32573 -39.28958 -38.56464 -37.20196 -34.33522 -33.75458 -33.46332 -32.34193 -31.27731 -31.08366 -28.83203 -28.02421 -26.88303 -25.73915 -24.91389 -23.68347 -22.32809 -21.41763 -20.22961 -19.96725 -19.10111 -17.87659 -17.19098 -16.75023 -16.42637 -16.09636 -15.67142 -15.48045 -15.01360 -14.80734 -14.74296 -14.49800 -14.08854 -13.96036 -13.81127 -13.52626 -13.31664 -13.26150 -13.15943 -13.04168 -12.69982 -12.42413 -12.24868 -12.11134 -12.03478 -11.90433 -11.63507 -11.50477 -11.35420 -11.22592 -11.10471 -11.07142 -10.93109 -10.60955 -10.46602 -10.23947 -9.89613 -9.49243 -8.97553 -8.89610 -8.68170 -8.48486 -8.01682 -7.92743 -6.44312 -3.85251 1.21783 1.29658 2.68590 3.17707 3.21586 3.23879 3.27899 3.70842 3.87071 3.93060 4.21349 4.50758 4.64744 4.68083 4.81818 4.86484 4.89052 5.00970 5.08430 5.11103 5.15654 5.19954 5.25433 5.36754 5.41414 5.45507 5.48788 5.56978 5.57599 5.64748 5.66657 5.69700 5.77066 5.87822 5.92550 5.95687 5.98808 6.02434 6.17227 6.26509 6.34960 6.39395 6.47057 6.52035 6.53136 6.90113 7.20276 7.31743 7.52283 7.61267 8.03303 8.29390 8.58801 9.15339 9.51661 10.03274 10.73221 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015573 B = 0.002034 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.561988 B =13766.036740 C =14759.020523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.070 4.070 3 C -0.123 4.123 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.103 4.103 7 C -0.062 4.062 8 C -0.107 4.107 9 C 0.514 3.486 10 O -0.542 6.542 11 N -0.713 5.713 12 C 0.131 3.869 13 C 0.063 3.937 14 H 0.053 0.947 15 C -0.148 4.148 16 N -0.512 5.512 17 C 0.022 3.978 18 C 0.041 3.959 19 C 0.444 3.556 20 O -0.578 6.578 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.411 0.589 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.094 0.906 47 H 0.014 0.986 48 H 0.092 0.908 49 H 0.047 0.953 50 H 0.392 0.608 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 22.570 -1.052 22.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.070 4.070 3 C -0.141 4.141 4 C -0.138 4.138 5 C -0.144 4.144 6 C -0.121 4.121 7 C -0.062 4.062 8 C -0.146 4.146 9 C 0.300 3.700 10 O -0.419 6.419 11 N -0.366 5.366 12 C 0.006 3.994 13 C -0.045 4.045 14 H 0.071 0.929 15 C -0.206 4.206 16 N -0.237 5.237 17 C -0.126 4.126 18 C -0.090 4.090 19 C 0.229 3.771 20 O -0.462 6.462 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.248 0.752 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.112 0.888 47 H 0.032 0.968 48 H 0.110 0.890 49 H 0.065 0.935 50 H 0.225 0.775 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.319 23.298 -0.846 23.315 hybrid contribution -0.254 -1.524 -0.353 1.584 sum 0.064 21.774 -1.199 21.807 Atomic orbital electron populations 1.20819 0.91475 1.02984 1.01972 1.19690 0.95867 0.92600 0.98830 1.20954 0.94284 0.97239 1.01583 1.21091 0.94301 0.97937 1.00433 1.21068 0.99750 0.92483 1.01116 1.21022 0.93474 0.98327 0.99276 1.19153 0.93439 0.93154 1.00479 1.20702 1.02188 0.96482 0.95270 1.20441 0.77705 0.80919 0.90971 1.90711 1.53729 1.51477 1.45981 1.45891 1.57338 1.23607 1.09799 1.21341 0.99554 0.94597 0.83860 1.21976 0.93726 0.91950 0.96892 0.92873 1.21920 0.95231 1.02237 1.01205 1.61627 1.02619 1.05946 1.53540 1.22534 0.90618 1.03879 0.95532 1.21950 0.99052 0.89295 0.98746 1.19718 0.87632 0.83027 0.86713 1.90491 1.28507 1.75539 1.51665 1.41864 1.27555 1.09022 1.41616 1.19634 1.10110 0.91470 1.21642 0.87987 1.25257 0.96673 0.97721 0.98280 1.69601 1.23930 1.17962 1.42806 0.85927 0.79351 0.78705 0.80290 1.19889 1.21003 1.19944 0.91140 0.91553 0.91582 0.86299 0.86332 0.86209 0.86075 0.87948 0.87672 0.75193 0.91385 0.91469 0.92159 0.91793 0.91663 0.91931 0.88756 0.96771 0.88954 0.93519 0.77532 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.22 36.01 0.33 -0.69 16 2 C -0.07 -0.75 5.88 -104.63 -0.62 -1.37 16 3 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 4 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 5 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 6 C -0.10 -1.15 9.68 -39.58 -0.38 -1.54 16 7 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 8 C -0.11 -1.08 5.15 -29.04 -0.15 -1.23 16 9 C 0.51 6.46 7.02 -10.99 -0.08 6.38 16 10 O -0.54 -8.74 16.03 5.55 0.09 -8.65 16 11 N -0.71 -8.21 5.10 -60.29 -0.31 -8.52 16 12 C 0.13 1.50 4.60 -4.04 -0.02 1.48 16 13 C 0.06 0.72 2.32 -67.72 -0.16 0.57 16 14 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 15 C -0.15 -1.48 8.87 37.15 0.33 -1.15 16 16 N -0.51 -7.59 3.82 -236.34 -0.90 -8.49 16 17 C 0.02 0.35 8.57 60.07 0.51 0.86 16 18 C 0.04 0.67 5.26 -4.98 -0.03 0.65 16 19 C 0.44 9.91 7.41 -10.99 -0.08 9.83 16 20 O -0.58 -14.70 13.98 5.55 0.08 -14.63 16 21 N -0.56 -13.77 5.29 -10.97 -0.06 -13.83 16 22 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 23 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.05 13.05 55.50 0.72 -23.32 16 26 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.07 0.62 6.15 -51.93 -0.32 0.30 16 33 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.10 0.83 7.01 -51.92 -0.36 0.47 16 38 H 0.11 0.97 8.05 -51.93 -0.42 0.56 16 39 H 0.41 4.61 7.30 -40.82 -0.30 4.31 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.86 6.83 -51.93 -0.35 0.50 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.66 6.20 -51.93 -0.32 0.33 16 44 H 0.06 0.66 7.17 -51.93 -0.37 0.29 16 45 H 0.06 0.93 6.74 -51.93 -0.35 0.58 16 46 H 0.09 1.81 5.78 -51.93 -0.30 1.51 16 47 H 0.01 0.20 8.12 -51.93 -0.42 -0.22 16 48 H 0.09 1.36 5.83 -51.93 -0.30 1.06 16 49 H 0.05 0.73 8.12 -51.93 -0.42 0.30 16 50 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 51 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 411.03 15.07 6.19 6.19 Total: -1.00 -32.38 411.03 -9.30 -41.67 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -7.88 Total: 13.86 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -2.21 Total: 0.04 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.54 Total: -54.16 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.17 Total: -23.28 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.38 -9.30 -41.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329614216.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.960 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds