Wall clock time and date at job start Wed Apr 1 2020 04:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38252 * 119.99964 * 2 1 4 4 C 1.38217 * 120.00077 * 180.23117 * 3 2 1 5 5 C 1.38263 * 119.99610 * 359.81276 * 4 3 2 6 6 C 1.38206 * 120.00328 * 359.97438 * 5 4 3 7 7 C 1.38214 * 119.99847 * 179.79335 * 2 1 3 8 8 C 1.50701 * 120.00474 * 359.97438 * 7 2 1 9 9 C 1.50694 * 109.47131 * 84.72423 * 8 7 2 10 10 O 1.21288 * 120.00157 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00308 * 180.02562 * 9 8 7 12 12 C 1.46507 * 120.00528 * 180.27677 * 11 9 8 13 13 C 1.53001 * 109.47252 * 177.07982 * 12 11 9 14 14 H 1.09000 * 109.46993 * 185.67478 * 13 12 11 15 15 C 1.52995 * 109.47113 * 65.67695 * 13 12 11 16 16 N 1.46898 * 109.47127 * 305.67197 * 13 12 11 17 17 C 1.46901 * 111.00626 * 304.07790 * 16 13 12 18 18 C 1.46896 * 111.00075 * 180.11687 * 16 13 12 19 19 C 1.50696 * 109.47761 * 190.00280 * 18 16 13 20 20 O 1.21294 * 119.99543 * 0.02562 * 19 18 16 21 21 N 1.34769 * 120.00513 * 180.02562 * 19 18 16 22 22 C 1.37099 * 120.00106 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00273 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99909 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00114 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00138 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47095 * 59.99919 * 26 24 22 28 28 H 1.48493 * 109.47400 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46908 * 300.00159 * 26 24 22 30 30 H 1.08993 * 109.47170 * 270.20735 * 1 2 3 31 31 H 1.09004 * 109.47388 * 30.20825 * 1 2 3 32 32 H 1.09004 * 109.46856 * 150.21026 * 1 2 3 33 33 H 1.08001 * 120.00294 * 0.06477 * 3 2 1 34 34 H 1.07998 * 120.00257 * 179.83557 * 4 3 2 35 35 H 1.08002 * 119.99724 * 179.97438 * 5 4 3 36 36 H 1.07994 * 120.00271 * 179.97438 * 6 5 4 37 37 H 1.09009 * 109.46783 * 324.73088 * 8 7 2 38 38 H 1.08994 * 109.47395 * 204.72957 * 8 7 2 39 39 H 0.97004 * 119.99699 * 0.02562 * 11 9 8 40 40 H 1.08995 * 109.46670 * 297.08495 * 12 11 9 41 41 H 1.09002 * 109.46609 * 57.07854 * 12 11 9 42 42 H 1.09001 * 109.47380 * 59.99478 * 15 13 12 43 43 H 1.08999 * 109.47170 * 179.97438 * 15 13 12 44 44 H 1.09000 * 109.47014 * 299.99770 * 15 13 12 45 45 H 1.09001 * 109.47183 * 66.55504 * 17 16 13 46 46 H 1.08993 * 109.47153 * 186.55643 * 17 16 13 47 47 H 1.09001 * 109.46658 * 306.56270 * 17 16 13 48 48 H 1.09003 * 109.47519 * 310.00619 * 18 16 13 49 49 H 1.09005 * 109.46932 * 70.00559 * 18 16 13 50 50 H 0.97003 * 119.99912 * 359.97438 * 21 19 18 51 51 H 0.97004 * 120.00558 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2717 -0.0001 -0.0057 6 6 3.5807 -1.1970 -0.0013 7 6 2.1980 -1.1970 0.0043 8 6 1.4446 -2.5021 0.0096 9 6 1.0798 -2.8773 -1.4036 10 8 1.4005 -2.1561 -2.3245 11 7 0.3972 -4.0141 -1.6442 12 6 0.0478 -4.3819 -3.0186 13 6 -0.6547 -5.7412 -3.0199 14 1 -0.8244 -6.0614 -4.0479 15 6 -1.9966 -5.6224 -2.2947 16 7 0.1880 -6.7285 -2.3323 17 6 1.5219 -6.7994 -2.9437 18 6 -0.4547 -8.0493 -2.3165 19 6 0.3108 -8.9698 -1.4013 20 8 1.2948 -8.5651 -0.8189 21 7 -0.0979 -10.2425 -1.2297 22 6 0.5989 -11.0800 -0.3974 23 1 1.4751 -10.7197 0.1211 24 6 0.1772 -12.3920 -0.2202 25 7 -0.8892 -12.8303 -0.8507 26 14 1.1262 -13.5329 0.9143 27 1 1.1344 -12.9700 2.2885 28 1 0.4768 -14.8683 0.9298 29 1 2.5222 -13.6676 0.4262 30 1 -0.3633 0.0037 1.0276 31 1 -0.3634 0.8881 -0.5171 32 1 -0.3633 -0.8919 -0.5106 33 1 1.6583 2.1326 0.0011 34 1 4.1204 2.1326 -0.0075 35 1 5.3517 -0.0001 -0.0099 36 1 4.1206 -2.1323 -0.0024 37 1 0.5365 -2.3950 0.6030 38 1 2.0714 -3.2818 0.4422 39 1 0.1404 -4.5908 -0.9076 40 1 -0.6184 -3.6282 -3.4382 41 1 0.9546 -4.4410 -3.6206 42 1 -2.6218 -4.8897 -2.8050 43 1 -2.4972 -6.5906 -2.2961 44 1 -1.8269 -5.3022 -1.2667 45 1 2.0484 -5.8597 -2.7768 46 1 2.0851 -7.6165 -2.4930 47 1 1.4216 -6.9744 -4.0149 48 1 -1.4795 -7.9506 -1.9583 49 1 -0.4607 -8.4626 -3.3252 50 1 -0.8851 -10.5660 -1.6952 51 1 -1.1834 -13.7464 -0.7274 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329614216.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:22 Heat of formation + Delta-G solvation = -66.950820 kcal Electronic energy + Delta-G solvation = -30322.432978 eV Core-core repulsion = 26220.682992 eV Total energy + Delta-G solvation = -4101.749985 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.24855 -40.51003 -39.76693 -38.55084 -35.97759 -35.16040 -34.24222 -33.24005 -33.11124 -32.08411 -29.97533 -29.04879 -27.71103 -26.98461 -26.26443 -25.09783 -23.12446 -22.25140 -21.27558 -21.09256 -20.60989 -19.79313 -18.23935 -17.88522 -17.39163 -17.09252 -16.85150 -16.56143 -16.47394 -16.12573 -15.82945 -15.72093 -15.33037 -15.20575 -15.16503 -14.72464 -14.40010 -14.17213 -14.02772 -13.84415 -13.78936 -13.61761 -13.39412 -13.15612 -13.10618 -12.95141 -12.83779 -12.82777 -12.71923 -12.41916 -12.31800 -12.26501 -12.12198 -11.84425 -11.80313 -11.64917 -11.41737 -10.93501 -10.23195 -9.96678 -9.95848 -9.67701 -9.44318 -9.22767 -8.43681 -5.91552 0.44475 0.52288 1.40810 1.42819 1.53025 1.70884 2.10395 2.27726 2.32890 2.74800 2.94540 3.23554 3.45281 3.71621 3.74329 3.91977 4.01661 4.08424 4.15306 4.20008 4.21728 4.34748 4.36281 4.40326 4.46015 4.54076 4.59165 4.60847 4.63022 4.71650 4.73016 4.81200 4.81845 4.86065 4.94966 4.96327 5.04182 5.17416 5.19361 5.32080 5.37552 5.43665 5.52890 5.59925 5.63802 5.75027 5.88982 6.07828 6.16531 6.20289 6.64301 6.65734 7.16767 7.32999 7.61371 8.17208 8.73346 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015573 B = 0.002034 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.561988 B =13766.036740 C =14759.020523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.132 4.132 4 C -0.125 4.125 5 C -0.138 4.138 6 C -0.125 4.125 7 C -0.081 4.081 8 C -0.102 4.102 9 C 0.515 3.485 10 O -0.580 6.580 11 N -0.707 5.707 12 C 0.133 3.867 13 C 0.070 3.930 14 H 0.068 0.932 15 C -0.146 4.146 16 N -0.522 5.522 17 C 0.032 3.968 18 C 0.054 3.946 19 C 0.443 3.557 20 O -0.612 6.612 21 N -0.576 5.576 22 C -0.329 4.329 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.990 3.010 27 H -0.272 1.272 28 H -0.273 1.273 29 H -0.274 1.274 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.414 0.586 40 H 0.080 0.920 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.055 0.945 47 H 0.029 0.971 48 H 0.117 0.883 49 H 0.063 0.937 50 H 0.395 0.605 51 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.702 23.508 -1.064 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.150 4.150 4 C -0.143 4.143 5 C -0.155 4.155 6 C -0.143 4.143 7 C -0.081 4.081 8 C -0.142 4.142 9 C 0.302 3.698 10 O -0.460 6.460 11 N -0.360 5.360 12 C 0.009 3.991 13 C -0.038 4.038 14 H 0.086 0.914 15 C -0.203 4.203 16 N -0.247 5.247 17 C -0.117 4.117 18 C -0.077 4.077 19 C 0.231 3.769 20 O -0.498 6.498 21 N -0.214 5.214 22 C -0.458 4.458 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.814 3.186 27 H -0.197 1.197 28 H -0.197 1.197 29 H -0.199 1.199 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.251 0.749 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.047 0.953 48 H 0.135 0.865 49 H 0.081 0.919 50 H 0.229 0.771 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.887 24.231 -0.864 24.262 hybrid contribution 0.140 -1.717 -0.384 1.765 sum -0.747 22.514 -1.248 22.561 Atomic orbital electron populations 1.20832 0.90251 1.02887 1.03011 1.20020 0.97025 0.92746 0.98766 1.21295 0.94729 0.97887 1.01116 1.21435 0.94539 0.98723 0.99607 1.21358 1.00789 0.92465 1.00931 1.21239 0.93905 0.98976 1.00152 1.19365 0.93722 0.93879 1.01177 1.20718 1.03144 0.96316 0.93994 1.20795 0.76966 0.80538 0.91472 1.90689 1.55339 1.52701 1.47285 1.45891 1.56798 1.23258 1.10006 1.21338 0.99174 0.94959 0.83639 1.22034 0.93726 0.90538 0.97544 0.91448 1.21924 0.94356 1.02919 1.01146 1.61573 1.02694 1.05701 1.54726 1.22334 0.90905 1.02397 0.96021 1.21814 0.99074 0.88849 0.97951 1.20759 0.87097 0.82865 0.86216 1.90474 1.30116 1.76153 1.53014 1.41932 1.27795 1.09721 1.41921 1.19584 1.10407 0.92745 1.23113 0.90325 1.25987 0.97455 0.98531 0.99381 1.69661 1.24627 1.18448 1.43452 0.85035 0.78066 0.77154 0.78372 1.19685 1.19715 1.19922 0.89462 0.90825 0.92446 0.84306 0.84005 0.84601 0.86022 0.85840 0.87119 0.74865 0.90218 0.92901 0.90000 0.91780 0.91910 0.91628 0.92641 0.95276 0.86488 0.91864 0.77118 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 9.22 71.24 0.66 -1.18 16 2 C -0.09 -1.78 5.88 -19.87 -0.12 -1.90 16 3 C -0.13 -2.48 9.70 22.27 0.22 -2.27 16 4 C -0.13 -2.27 10.05 22.27 0.22 -2.04 16 5 C -0.14 -2.74 10.05 22.27 0.22 -2.51 16 6 C -0.12 -2.82 9.68 22.27 0.22 -2.61 16 7 C -0.08 -1.83 4.37 -19.86 -0.09 -1.92 16 8 C -0.10 -2.04 5.15 29.10 0.15 -1.89 16 9 C 0.51 12.73 7.02 87.66 0.62 13.35 16 10 O -0.58 -18.73 16.03 -3.05 -0.05 -18.78 16 11 N -0.71 -15.56 5.10 -463.05 -2.36 -17.93 16 12 C 0.13 2.85 4.60 86.38 0.40 3.25 16 13 C 0.07 1.42 2.32 44.91 0.10 1.53 16 14 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 15 C -0.15 -2.46 8.87 71.98 0.64 -1.83 16 16 N -0.52 -14.75 3.82 -901.64 -3.44 -18.19 16 17 C 0.03 0.98 8.57 127.69 1.09 2.07 16 18 C 0.05 1.70 5.26 85.56 0.45 2.15 16 19 C 0.44 19.90 7.41 87.66 0.65 20.55 16 20 O -0.61 -31.88 13.98 -3.07 -0.04 -31.92 16 21 N -0.58 -28.45 5.29 -307.00 -1.62 -30.08 16 22 C -0.33 -18.19 9.68 84.04 0.81 -17.37 16 23 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 24 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 25 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 26 Si 0.99 42.34 29.55 68.60 2.03 44.37 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 29 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.06 8.09 -2.38 -0.02 1.04 16 32 H 0.06 1.02 6.15 -2.38 -0.01 1.01 16 33 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 34 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 35 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.12 2.57 8.06 -2.91 -0.02 2.54 16 37 H 0.12 1.86 7.01 -2.38 -0.02 1.84 16 38 H 0.11 2.04 8.05 -2.39 -0.02 2.02 16 39 H 0.41 8.79 7.30 -92.71 -0.68 8.11 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.05 1.30 6.83 -2.39 -0.02 1.29 16 42 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 1.10 6.20 -2.39 -0.01 1.09 16 44 H 0.06 1.11 7.17 -2.39 -0.02 1.09 16 45 H 0.07 1.96 6.74 -2.39 -0.02 1.94 16 46 H 0.05 2.17 5.78 -2.39 -0.01 2.16 16 47 H 0.03 0.79 8.12 -2.39 -0.02 0.78 16 48 H 0.12 3.16 5.83 -2.39 -0.01 3.15 16 49 H 0.06 1.83 8.12 -2.38 -0.02 1.81 16 50 H 0.40 18.59 7.90 -92.71 -0.73 17.86 16 51 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -71.03 411.03 1.05 -69.98 By element: Atomic # 1 Polarization: 44.42 SS G_CDS: -0.45 Total: 43.97 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 6.71 Total: 7.12 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -7.14 Total: -114.74 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -0.09 Total: -50.70 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -71.03 1.05 -69.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329614216.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.032 kcal (2) G-P(sol) polarization free energy of solvation -71.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds