Wall clock time and date at job start Wed Apr 1 2020 04:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38255 * 120.00236 * 2 1 4 4 C 1.38203 * 119.99915 * 180.27763 * 3 2 1 5 5 C 1.38262 * 120.00027 * 359.73700 * 4 3 2 6 6 C 1.38209 * 120.00097 * 359.97438 * 5 4 3 7 7 C 1.38212 * 119.99424 * 179.74360 * 2 1 3 8 8 C 1.50703 * 120.00547 * 0.02562 * 7 2 1 9 9 C 1.50700 * 109.47148 * 84.72382 * 8 7 2 10 10 O 1.21283 * 119.99803 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.28037 * 9 8 7 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 8 13 13 C 1.52999 * 109.46992 * 179.97438 * 12 11 9 14 14 H 1.08994 * 109.47462 * 64.99994 * 13 12 11 15 15 C 1.53001 * 109.47200 * 184.99961 * 13 12 11 16 16 N 1.46902 * 109.47043 * 304.99995 * 13 12 11 17 17 C 1.46900 * 111.00324 * 298.95203 * 16 13 12 18 18 C 1.46906 * 110.99850 * 174.99846 * 16 13 12 19 19 C 1.50701 * 109.46838 * 189.99750 * 18 16 13 20 20 O 1.21291 * 120.00327 * 0.02562 * 19 18 16 21 21 N 1.34774 * 119.99880 * 180.02562 * 19 18 16 22 22 C 1.37098 * 120.00219 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99808 * 359.97438 * 22 21 19 24 24 C 1.38952 * 120.00016 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99975 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00075 * 0.02562 * 24 22 21 27 27 H 1.48494 * 109.46987 * 89.99840 * 26 24 22 28 28 H 1.48500 * 109.46812 * 209.99690 * 26 24 22 29 29 H 1.48493 * 109.47158 * 329.99657 * 26 24 22 30 30 H 1.09000 * 109.46739 * 270.25555 * 1 2 3 31 31 H 1.08994 * 109.46775 * 30.25608 * 1 2 3 32 32 H 1.08997 * 109.47051 * 150.25397 * 1 2 3 33 33 H 1.08001 * 119.99901 * 0.03658 * 3 2 1 34 34 H 1.08000 * 120.00464 * 179.77189 * 4 3 2 35 35 H 1.07998 * 119.99988 * 179.97438 * 5 4 3 36 36 H 1.07996 * 120.00428 * 179.97438 * 6 5 4 37 37 H 1.09009 * 109.46601 * 324.72403 * 8 7 2 38 38 H 1.08998 * 109.47035 * 204.72911 * 8 7 2 39 39 H 0.97000 * 119.99894 * 359.71837 * 11 9 8 40 40 H 1.08995 * 109.47421 * 299.99467 * 12 11 9 41 41 H 1.09001 * 109.47621 * 60.00103 * 12 11 9 42 42 H 1.09001 * 109.46990 * 179.97438 * 15 13 12 43 43 H 1.08994 * 109.47308 * 299.99966 * 15 13 12 44 44 H 1.09003 * 109.47254 * 60.00178 * 15 13 12 45 45 H 1.09003 * 109.46861 * 59.99313 * 17 16 13 46 46 H 1.08995 * 109.47461 * 180.02562 * 17 16 13 47 47 H 1.09007 * 109.46872 * 300.00294 * 17 16 13 48 48 H 1.08997 * 109.47311 * 310.00199 * 18 16 13 49 49 H 1.09008 * 109.46852 * 70.00221 * 18 16 13 50 50 H 0.97006 * 120.00243 * 359.97438 * 21 19 18 51 51 H 0.97000 * 120.00473 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0058 5 6 4.2717 -0.0002 -0.0061 6 6 3.5807 -1.1971 -0.0001 7 6 2.1980 -1.1970 0.0054 8 6 1.4445 -2.5021 0.0106 9 6 1.0808 -2.8778 -1.4027 10 8 1.4022 -2.1570 -2.3236 11 7 0.3938 -4.0123 -1.6428 12 6 0.0349 -4.3744 -3.0162 13 6 -0.7344 -5.6969 -3.0104 14 1 -1.6829 -5.5632 -2.4903 15 6 -1.0006 -6.1384 -4.4510 16 7 0.0607 -6.7230 -2.3228 17 6 1.3385 -6.9483 -3.0117 18 6 -0.6955 -7.9758 -2.1931 19 6 0.0445 -8.9167 -1.2776 20 8 1.0979 -8.5770 -0.7816 21 7 -0.4642 -10.1357 -1.0100 22 6 0.2087 -10.9915 -0.1768 23 1 1.1467 -10.6890 0.2649 24 6 -0.3161 -12.2481 0.0995 25 7 0.3287 -13.0683 0.8986 26 14 -1.9381 -12.7716 -0.6650 27 1 -1.6794 -13.4393 -1.9659 28 1 -2.6329 -13.7159 0.2465 29 1 -2.7912 -11.5760 -0.8832 30 1 -0.3633 0.0046 1.0277 31 1 -0.3633 0.8877 -0.5178 32 1 -0.3633 -0.8922 -0.5099 33 1 1.6585 2.1326 0.0006 34 1 4.1206 2.1325 -0.0095 35 1 5.3517 -0.0002 -0.0111 36 1 4.1205 -2.1324 -0.0007 37 1 0.5360 -2.3947 0.6034 38 1 2.0711 -3.2816 0.4441 39 1 0.1371 -4.5889 -0.9063 40 1 -0.5900 -3.5921 -3.4468 41 1 0.9413 -4.4845 -3.6117 42 1 -1.5483 -7.0808 -4.4468 43 1 -1.5906 -5.3771 -4.9612 44 1 -0.0521 -6.2722 -4.9711 45 1 1.9088 -6.0196 -3.0322 46 1 1.9070 -7.7127 -2.4820 47 1 1.1474 -7.2799 -4.0323 48 1 -1.6807 -7.7642 -1.7775 49 1 -0.8066 -8.4364 -3.1748 50 1 -1.3069 -10.4073 -1.4064 51 1 -0.0374 -13.9457 1.0912 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329614217.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:26 Heat of formation + Delta-G solvation = -39.628985 kcal Electronic energy + Delta-G solvation = -30259.002023 eV Core-core repulsion = 26158.436802 eV Total energy + Delta-G solvation = -4100.565222 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.33081 -39.39660 -38.68482 -37.42331 -34.37407 -33.86734 -33.47144 -32.34570 -31.71737 -31.06006 -28.51582 -28.09276 -26.98876 -25.89227 -25.37419 -23.66496 -22.28806 -21.29054 -20.29499 -19.81471 -19.34533 -18.27598 -17.06503 -16.72428 -16.58742 -16.15030 -15.91657 -15.43444 -15.08144 -15.01390 -14.87609 -14.57695 -14.25841 -14.01175 -13.60856 -13.36108 -13.30218 -13.20937 -13.10828 -13.00355 -12.94380 -12.52925 -12.47456 -12.23721 -12.14492 -12.09455 -11.86792 -11.70836 -11.37811 -11.31943 -11.11373 -11.07793 -11.05104 -10.83921 -10.62865 -10.01196 -9.91390 -9.57206 -9.01021 -8.90087 -8.68793 -8.63197 -8.22010 -8.01460 -6.34485 -3.85989 1.21395 1.29350 2.66618 2.98854 3.03285 3.12038 3.17887 3.69178 3.69837 3.87077 4.06822 4.50114 4.61994 4.64350 4.71996 4.81387 4.87935 4.90359 5.01185 5.09632 5.12108 5.15111 5.17022 5.35399 5.36476 5.40998 5.43124 5.44643 5.47462 5.57278 5.61494 5.64638 5.68383 5.75812 5.80516 5.87129 5.91933 5.93444 6.01934 6.07568 6.34615 6.39144 6.44748 6.49929 6.51917 6.89787 7.07898 7.22034 7.54712 7.58924 8.11066 8.27119 8.56451 8.91859 9.38943 9.79618 10.78553 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016243 B = 0.002040 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.395041 B =13720.923411 C =14558.300248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.070 4.070 3 C -0.123 4.123 4 C -0.119 4.119 5 C -0.126 4.126 6 C -0.103 4.103 7 C -0.062 4.062 8 C -0.107 4.107 9 C 0.514 3.486 10 O -0.541 6.541 11 N -0.716 5.716 12 C 0.132 3.868 13 C 0.064 3.936 14 H 0.088 0.912 15 C -0.187 4.187 16 N -0.510 5.510 17 C 0.015 3.985 18 C 0.041 3.959 19 C 0.452 3.548 20 O -0.559 6.559 21 N -0.591 5.591 22 C -0.304 4.304 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.412 0.588 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.096 0.904 47 H 0.021 0.979 48 H 0.088 0.912 49 H 0.051 0.949 50 H 0.370 0.630 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.131 23.496 -5.555 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.070 4.070 3 C -0.141 4.141 4 C -0.138 4.138 5 C -0.144 4.144 6 C -0.121 4.121 7 C -0.063 4.063 8 C -0.146 4.146 9 C 0.300 3.700 10 O -0.419 6.419 11 N -0.368 5.368 12 C 0.008 3.992 13 C -0.046 4.046 14 H 0.107 0.893 15 C -0.246 4.246 16 N -0.234 5.234 17 C -0.132 4.132 18 C -0.090 4.090 19 C 0.238 3.762 20 O -0.441 6.441 21 N -0.230 5.230 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.248 0.752 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.114 0.886 47 H 0.039 0.961 48 H 0.107 0.893 49 H 0.069 0.931 50 H 0.202 0.798 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.067 24.185 -5.293 24.844 hybrid contribution -1.599 -1.317 -1.072 2.333 sum -3.667 22.868 -6.365 24.019 Atomic orbital electron populations 1.20819 0.91486 1.02955 1.01985 1.19692 0.95859 0.92609 0.98850 1.20951 0.94288 0.97235 1.01588 1.21089 0.94299 0.97946 1.00417 1.21071 0.99762 0.92479 1.01093 1.21025 0.93469 0.98340 0.99250 1.19153 0.93448 0.93148 1.00510 1.20705 1.02231 0.96500 0.95205 1.20452 0.77707 0.80828 0.91000 1.90710 1.53740 1.51423 1.45997 1.45872 1.57160 1.23911 1.09888 1.21344 0.99358 0.94727 0.83816 1.22052 0.97114 0.91698 0.93689 0.89342 1.22408 1.02571 1.02176 0.97429 1.61819 1.04120 1.07309 1.50135 1.22617 0.91498 1.03060 0.96050 1.21917 0.97608 0.90662 0.98827 1.19632 0.87764 0.82672 0.86140 1.90529 1.23636 1.75565 1.54357 1.42220 1.22050 1.14287 1.44485 1.19413 1.06961 0.94378 1.22534 0.86273 1.25044 0.98177 0.95932 0.97046 1.69618 1.38808 1.08499 1.35151 0.86677 0.83613 0.79200 0.79913 1.19695 1.20181 1.19512 0.91122 0.91559 0.91613 0.86299 0.86325 0.86192 0.86056 0.87911 0.87625 0.75183 0.91384 0.91478 0.91779 0.91864 0.91759 0.91913 0.88571 0.96107 0.89340 0.93091 0.79772 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.22 36.01 0.33 -0.68 16 2 C -0.07 -0.75 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -1.22 9.70 -39.59 -0.38 -1.60 16 4 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 5 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 6 C -0.10 -1.15 9.68 -39.58 -0.38 -1.53 16 7 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 8 C -0.11 -1.08 5.15 -29.03 -0.15 -1.22 16 9 C 0.51 6.39 7.03 -10.98 -0.08 6.31 16 10 O -0.54 -8.64 16.03 5.55 0.09 -8.55 16 11 N -0.72 -8.05 5.39 -60.30 -0.32 -8.37 16 12 C 0.13 1.44 4.69 -4.04 -0.02 1.42 16 13 C 0.06 0.67 2.50 -67.71 -0.17 0.50 16 14 H 0.09 0.84 8.03 -51.93 -0.42 0.42 16 15 C -0.19 -1.72 8.50 37.16 0.32 -1.41 16 16 N -0.51 -7.05 3.93 -236.32 -0.93 -7.98 16 17 C 0.02 0.23 8.46 60.06 0.51 0.73 16 18 C 0.04 0.62 4.89 -4.97 -0.02 0.60 16 19 C 0.45 9.60 7.47 -10.99 -0.08 9.52 16 20 O -0.56 -13.98 13.91 5.55 0.08 -13.90 16 21 N -0.59 -13.44 5.09 -10.96 -0.06 -13.50 16 22 C -0.30 -8.33 10.16 -14.93 -0.15 -8.48 16 23 H 0.12 3.75 7.39 -52.49 -0.39 3.36 16 24 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 25 N -0.88 -25.27 13.96 55.50 0.77 -24.49 16 26 Si 0.88 18.88 27.74 -169.99 -4.71 14.16 16 27 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 28 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 29 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 32 H 0.06 0.61 6.15 -51.93 -0.32 0.30 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.10 0.83 7.01 -51.92 -0.36 0.46 16 38 H 0.11 0.97 8.05 -51.93 -0.42 0.55 16 39 H 0.41 4.46 8.14 -40.82 -0.33 4.13 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.82 6.70 -51.93 -0.35 0.48 16 42 H 0.06 0.60 6.75 -51.93 -0.35 0.25 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.63 6.39 -51.93 -0.33 0.30 16 45 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 46 H 0.10 1.78 5.82 -51.93 -0.30 1.47 16 47 H 0.02 0.27 6.28 -51.92 -0.33 -0.05 16 48 H 0.09 1.16 8.00 -51.93 -0.42 0.74 16 49 H 0.05 0.69 6.94 -51.92 -0.36 0.33 16 50 H 0.37 7.39 5.76 -40.82 -0.24 7.15 16 51 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 406.96 15.07 6.13 6.13 Total: -1.00 -33.73 406.96 -8.99 -42.72 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -7.79 Total: 14.37 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.25 Total: -0.59 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.53 Total: -54.34 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: 0.17 Total: -22.45 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.71 Total: 14.16 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.73 -8.99 -42.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329614217.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.086 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds