Wall clock time and date at job start Wed Apr 1 2020 04:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38255 * 120.00236 * 2 1 4 4 C 1.38203 * 119.99915 * 180.27763 * 3 2 1 5 5 C 1.38262 * 120.00027 * 359.73700 * 4 3 2 6 6 C 1.38209 * 120.00097 * 359.97438 * 5 4 3 7 7 C 1.38212 * 119.99424 * 179.74360 * 2 1 3 8 8 C 1.50703 * 120.00547 * 0.02562 * 7 2 1 9 9 C 1.50700 * 109.47148 * 84.72382 * 8 7 2 10 10 O 1.21283 * 119.99803 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.28037 * 9 8 7 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 8 13 13 C 1.52999 * 109.46992 * 179.97438 * 12 11 9 14 14 H 1.08994 * 109.47462 * 64.99994 * 13 12 11 15 15 C 1.53001 * 109.47200 * 184.99961 * 13 12 11 16 16 N 1.46902 * 109.47043 * 304.99995 * 13 12 11 17 17 C 1.46900 * 111.00324 * 298.95203 * 16 13 12 18 18 C 1.46906 * 110.99850 * 174.99846 * 16 13 12 19 19 C 1.50701 * 109.46838 * 189.99750 * 18 16 13 20 20 O 1.21291 * 120.00327 * 0.02562 * 19 18 16 21 21 N 1.34774 * 119.99880 * 180.02562 * 19 18 16 22 22 C 1.37098 * 120.00219 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99808 * 359.97438 * 22 21 19 24 24 C 1.38952 * 120.00016 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99975 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00075 * 0.02562 * 24 22 21 27 27 H 1.48494 * 109.46987 * 89.99840 * 26 24 22 28 28 H 1.48500 * 109.46812 * 209.99690 * 26 24 22 29 29 H 1.48493 * 109.47158 * 329.99657 * 26 24 22 30 30 H 1.09000 * 109.46739 * 270.25555 * 1 2 3 31 31 H 1.08994 * 109.46775 * 30.25608 * 1 2 3 32 32 H 1.08997 * 109.47051 * 150.25397 * 1 2 3 33 33 H 1.08001 * 119.99901 * 0.03658 * 3 2 1 34 34 H 1.08000 * 120.00464 * 179.77189 * 4 3 2 35 35 H 1.07998 * 119.99988 * 179.97438 * 5 4 3 36 36 H 1.07996 * 120.00428 * 179.97438 * 6 5 4 37 37 H 1.09009 * 109.46601 * 324.72403 * 8 7 2 38 38 H 1.08998 * 109.47035 * 204.72911 * 8 7 2 39 39 H 0.97000 * 119.99894 * 359.71837 * 11 9 8 40 40 H 1.08995 * 109.47421 * 299.99467 * 12 11 9 41 41 H 1.09001 * 109.47621 * 60.00103 * 12 11 9 42 42 H 1.09001 * 109.46990 * 179.97438 * 15 13 12 43 43 H 1.08994 * 109.47308 * 299.99966 * 15 13 12 44 44 H 1.09003 * 109.47254 * 60.00178 * 15 13 12 45 45 H 1.09003 * 109.46861 * 59.99313 * 17 16 13 46 46 H 1.08995 * 109.47461 * 180.02562 * 17 16 13 47 47 H 1.09007 * 109.46872 * 300.00294 * 17 16 13 48 48 H 1.08997 * 109.47311 * 310.00199 * 18 16 13 49 49 H 1.09008 * 109.46852 * 70.00221 * 18 16 13 50 50 H 0.97006 * 120.00243 * 359.97438 * 21 19 18 51 51 H 0.97000 * 120.00473 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0058 5 6 4.2717 -0.0002 -0.0061 6 6 3.5807 -1.1971 -0.0001 7 6 2.1980 -1.1970 0.0054 8 6 1.4445 -2.5021 0.0106 9 6 1.0808 -2.8778 -1.4027 10 8 1.4022 -2.1570 -2.3236 11 7 0.3938 -4.0123 -1.6428 12 6 0.0349 -4.3744 -3.0162 13 6 -0.7344 -5.6969 -3.0104 14 1 -1.6829 -5.5632 -2.4903 15 6 -1.0006 -6.1384 -4.4510 16 7 0.0607 -6.7230 -2.3228 17 6 1.3385 -6.9483 -3.0117 18 6 -0.6955 -7.9758 -2.1931 19 6 0.0445 -8.9167 -1.2776 20 8 1.0979 -8.5770 -0.7816 21 7 -0.4642 -10.1357 -1.0100 22 6 0.2087 -10.9915 -0.1768 23 1 1.1467 -10.6890 0.2649 24 6 -0.3161 -12.2481 0.0995 25 7 0.3287 -13.0683 0.8986 26 14 -1.9381 -12.7716 -0.6650 27 1 -1.6794 -13.4393 -1.9659 28 1 -2.6329 -13.7159 0.2465 29 1 -2.7912 -11.5760 -0.8832 30 1 -0.3633 0.0046 1.0277 31 1 -0.3633 0.8877 -0.5178 32 1 -0.3633 -0.8922 -0.5099 33 1 1.6585 2.1326 0.0006 34 1 4.1206 2.1325 -0.0095 35 1 5.3517 -0.0002 -0.0111 36 1 4.1205 -2.1324 -0.0007 37 1 0.5360 -2.3947 0.6034 38 1 2.0711 -3.2816 0.4441 39 1 0.1371 -4.5889 -0.9063 40 1 -0.5900 -3.5921 -3.4468 41 1 0.9413 -4.4845 -3.6117 42 1 -1.5483 -7.0808 -4.4468 43 1 -1.5906 -5.3771 -4.9612 44 1 -0.0521 -6.2722 -4.9711 45 1 1.9088 -6.0196 -3.0322 46 1 1.9070 -7.7127 -2.4820 47 1 1.1474 -7.2799 -4.0323 48 1 -1.6807 -7.7642 -1.7775 49 1 -0.8066 -8.4364 -3.1748 50 1 -1.3069 -10.4073 -1.4064 51 1 -0.0374 -13.9457 1.0912 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329614217.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:25 Heat of formation + Delta-G solvation = -63.914273 kcal Electronic energy + Delta-G solvation = -30260.055113 eV Core-core repulsion = 26158.436802 eV Total energy + Delta-G solvation = -4101.618311 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.24133 -40.62752 -39.78580 -38.71703 -35.99491 -35.20591 -34.24679 -33.71224 -33.11265 -32.04329 -29.49372 -29.24203 -27.72998 -26.98902 -26.66008 -25.12201 -23.06879 -22.09485 -21.39423 -21.10976 -20.70429 -20.04117 -18.14706 -17.78993 -17.48855 -17.15134 -16.84601 -16.70642 -16.63800 -16.27260 -15.73685 -15.62129 -15.55527 -15.03413 -14.89386 -14.70174 -14.33630 -14.30901 -14.10212 -14.01699 -13.93238 -13.79222 -13.55342 -13.21216 -13.10188 -12.94200 -12.84351 -12.83231 -12.75809 -12.41189 -12.38583 -12.24830 -11.96068 -11.85076 -11.80918 -11.72840 -11.42377 -10.93548 -10.32773 -10.19209 -9.97246 -9.68220 -9.44732 -9.17547 -8.38122 -5.98242 0.44039 0.51774 1.31668 1.37315 1.46061 1.70135 2.01839 2.25232 2.29667 2.64127 2.93050 3.18656 3.30107 3.71368 3.76701 3.91538 4.01866 4.08299 4.13856 4.19289 4.22672 4.32503 4.35480 4.36015 4.45639 4.46253 4.57278 4.60544 4.64399 4.66976 4.72323 4.79517 4.81836 4.85534 4.87375 4.95571 5.03392 5.18876 5.21014 5.31660 5.32752 5.54073 5.56519 5.59541 5.63380 5.74504 5.92123 6.03056 6.16099 6.19179 6.63610 6.65760 6.93306 7.32749 7.45086 8.03115 8.79509 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016243 B = 0.002040 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.395041 B =13720.923411 C =14558.300248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.132 4.132 4 C -0.125 4.125 5 C -0.138 4.138 6 C -0.125 4.125 7 C -0.081 4.081 8 C -0.103 4.103 9 C 0.515 3.485 10 O -0.580 6.580 11 N -0.710 5.710 12 C 0.133 3.867 13 C 0.072 3.928 14 H 0.110 0.890 15 C -0.184 4.184 16 N -0.524 5.524 17 C 0.026 3.974 18 C 0.054 3.946 19 C 0.453 3.547 20 O -0.603 6.603 21 N -0.594 5.594 22 C -0.322 4.322 23 H 0.055 0.945 24 C -0.018 4.018 25 N -0.937 5.937 26 Si 0.964 3.036 27 H -0.260 1.260 28 H -0.278 1.278 29 H -0.228 1.228 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.415 0.585 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.052 0.948 47 H 0.038 0.962 48 H 0.124 0.876 49 H 0.078 0.922 50 H 0.389 0.611 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.713 24.903 -7.272 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.150 4.150 4 C -0.143 4.143 5 C -0.156 4.156 6 C -0.143 4.143 7 C -0.082 4.082 8 C -0.142 4.142 9 C 0.302 3.698 10 O -0.460 6.460 11 N -0.362 5.362 12 C 0.009 3.991 13 C -0.036 4.036 14 H 0.128 0.872 15 C -0.243 4.243 16 N -0.248 5.248 17 C -0.122 4.122 18 C -0.077 4.077 19 C 0.240 3.760 20 O -0.487 6.487 21 N -0.236 5.236 22 C -0.452 4.452 23 H 0.073 0.927 24 C -0.217 4.217 25 N -0.578 5.578 26 Si 0.784 3.216 27 H -0.185 1.185 28 H -0.203 1.203 29 H -0.151 1.151 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.128 0.872 39 H 0.252 0.748 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.056 0.944 48 H 0.142 0.858 49 H 0.096 0.904 50 H 0.224 0.776 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.667 25.611 -7.021 27.154 hybrid contribution -0.324 -1.638 -0.511 1.746 sum -5.991 23.973 -7.532 25.832 Atomic orbital electron populations 1.20833 0.90212 1.02901 1.03019 1.20027 0.97053 0.92731 0.98764 1.21295 0.94719 0.97898 1.01095 1.21433 0.94555 0.98712 0.99597 1.21358 1.00788 0.92474 1.00934 1.21240 0.93931 0.98966 1.00182 1.19371 0.93717 0.93915 1.01182 1.20722 1.03159 0.96286 0.94042 1.20795 0.77039 0.80544 0.91444 1.90686 1.55370 1.52687 1.47279 1.45889 1.56545 1.23484 1.10276 1.21377 0.98930 0.95465 0.83375 1.22095 0.96999 0.89808 0.94688 0.87172 1.22385 1.02562 1.03122 0.96191 1.61727 1.04163 1.07527 1.51379 1.22388 0.91873 1.01693 0.96295 1.21849 0.97743 0.89703 0.98405 1.20923 0.87122 0.82620 0.85301 1.90528 1.25875 1.76444 1.55843 1.42049 1.22717 1.14385 1.44492 1.18970 1.05877 0.96130 1.24195 0.92670 1.26111 1.03174 0.95167 0.97198 1.69809 1.41552 1.09229 1.37212 0.85379 0.77505 0.79992 0.78737 1.18462 1.20346 1.15101 0.89471 0.90784 0.92433 0.84264 0.83989 0.84618 0.86080 0.85800 0.87193 0.74803 0.90390 0.93104 0.91041 0.89949 0.92641 0.91812 0.92929 0.94415 0.85806 0.90384 0.77612 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 9.22 71.24 0.66 -1.16 16 2 C -0.09 -1.78 5.88 -19.86 -0.12 -1.90 16 3 C -0.13 -2.48 9.70 22.27 0.22 -2.26 16 4 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 5 C -0.14 -2.76 10.05 22.27 0.22 -2.54 16 6 C -0.13 -2.86 9.68 22.27 0.22 -2.65 16 7 C -0.08 -1.85 4.37 -19.86 -0.09 -1.94 16 8 C -0.10 -2.05 5.15 29.10 0.15 -1.90 16 9 C 0.51 12.62 7.03 87.66 0.62 13.24 16 10 O -0.58 -18.60 16.03 -3.04 -0.05 -18.65 16 11 N -0.71 -15.18 5.39 -463.07 -2.50 -17.67 16 12 C 0.13 2.65 4.69 86.38 0.40 3.06 16 13 C 0.07 1.26 2.50 44.91 0.11 1.38 16 14 H 0.11 1.54 8.03 -2.39 -0.02 1.52 16 15 C -0.18 -2.65 8.50 71.98 0.61 -2.04 16 16 N -0.52 -13.34 3.93 -901.58 -3.54 -16.89 16 17 C 0.03 0.74 8.46 127.69 1.08 1.82 16 18 C 0.05 1.45 4.89 85.56 0.42 1.86 16 19 C 0.45 18.98 7.47 87.66 0.66 19.64 16 20 O -0.60 -31.31 13.91 -3.06 -0.04 -31.35 16 21 N -0.59 -26.61 5.09 -306.99 -1.56 -28.17 16 22 C -0.32 -18.34 10.16 84.04 0.85 -17.48 16 23 H 0.06 3.76 7.39 -2.91 -0.02 3.74 16 24 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 25 N -0.94 -55.87 13.96 21.66 0.30 -55.57 16 26 Si 0.96 37.74 27.74 68.60 1.90 39.64 16 27 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 28 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 29 H -0.23 -7.33 6.52 99.48 0.65 -6.68 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 32 H 0.06 1.01 6.15 -2.39 -0.01 0.99 16 33 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 35 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.12 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.12 1.87 7.01 -2.38 -0.02 1.85 16 38 H 0.11 2.05 8.05 -2.39 -0.02 2.03 16 39 H 0.42 8.41 8.14 -92.71 -0.75 7.66 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.05 1.20 6.70 -2.39 -0.02 1.18 16 42 H 0.07 0.96 6.75 -2.39 -0.02 0.95 16 43 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 0.92 6.39 -2.39 -0.02 0.90 16 45 H 0.06 1.80 6.44 -2.39 -0.02 1.78 16 46 H 0.05 2.01 5.82 -2.39 -0.01 1.99 16 47 H 0.04 0.95 6.28 -2.38 -0.01 0.93 16 48 H 0.12 2.56 8.00 -2.39 -0.02 2.54 16 49 H 0.08 1.76 6.94 -2.38 -0.02 1.74 16 50 H 0.39 14.28 5.76 -92.70 -0.53 13.75 16 51 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -80.15 406.96 0.83 -79.32 By element: Atomic # 1 Polarization: 45.17 SS G_CDS: -0.39 Total: 44.78 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 6.70 Total: 4.56 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -7.30 Total: -118.30 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -0.09 Total: -50.00 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 1.90 Total: 39.64 kcal Total: -80.15 0.83 -79.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329614217.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.407 kcal (2) G-P(sol) polarization free energy of solvation -80.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds