Wall clock time and date at job start Wed Apr 1 2020 05:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38290 * 119.92536 * 2 1 4 4 C 1.38101 * 120.07472 * 179.97438 * 3 2 1 5 5 C 1.38929 * 119.92164 * 0.22918 * 4 3 2 6 6 N 1.39723 * 120.07496 * 179.72380 * 5 4 3 7 7 C 1.34770 * 119.99963 * 28.56678 * 6 5 4 8 8 O 1.21378 * 120.00001 * 4.90008 * 7 6 5 9 9 C 1.49360 * 120.00241 * 184.90093 * 7 6 5 10 10 O 1.21362 * 119.99354 * 2.15101 * 9 7 6 11 11 N 1.34775 * 120.00197 * 182.14587 * 9 7 6 12 12 C 1.46501 * 120.00095 * 354.97643 * 11 9 7 13 13 C 1.53007 * 109.46842 * 83.50634 * 12 11 9 14 14 N 1.46493 * 109.46832 * 180.02562 * 13 12 11 15 15 C 1.46501 * 119.99964 * 269.99567 * 14 13 12 16 16 C 1.36933 * 120.00204 * 90.00366 * 14 13 12 17 17 H 1.07995 * 120.00223 * 6.44715 * 16 14 13 18 18 C 1.38816 * 120.00135 * 186.44352 * 16 14 13 19 19 N 1.31621 * 119.99830 * 32.87733 * 18 16 14 20 20 Si 1.86802 * 120.00298 * 212.87710 * 18 16 14 21 21 H 1.48504 * 109.46781 * 94.99800 * 20 18 16 22 22 H 1.48496 * 109.47413 * 214.99769 * 20 18 16 23 23 H 1.48498 * 109.46877 * 335.00294 * 20 18 16 24 24 C 1.46493 * 119.99710 * 174.98147 * 11 9 7 25 25 C 1.53003 * 109.47139 * 124.41181 * 24 11 9 26 26 C 1.53006 * 109.47142 * 244.40674 * 24 11 9 27 27 C 1.38936 * 119.84723 * 359.49704 * 5 4 3 28 28 C 1.38090 * 119.92555 * 0.52383 * 27 5 4 29 29 H 1.08999 * 109.47007 * 89.99757 * 1 2 3 30 30 H 1.09000 * 109.47561 * 210.00298 * 1 2 3 31 31 H 1.09005 * 109.47131 * 330.00938 * 1 2 3 32 32 H 1.07994 * 119.96397 * 359.96924 * 3 2 1 33 33 H 1.07995 * 120.03918 * 179.97438 * 4 3 2 34 34 H 0.97002 * 120.00020 * 208.57187 * 6 5 4 35 35 H 1.08995 * 109.47436 * 203.50532 * 12 11 9 36 36 H 1.08999 * 109.47248 * 323.50806 * 12 11 9 37 37 H 1.09002 * 109.46721 * 300.00384 * 13 12 11 38 38 H 1.08999 * 109.47059 * 60.00056 * 13 12 11 39 39 H 1.09008 * 109.46708 * 95.25685 * 15 14 13 40 40 H 1.08997 * 109.47819 * 215.25780 * 15 14 13 41 41 H 1.08999 * 109.47458 * 335.25922 * 15 14 13 42 42 H 0.97005 * 119.99966 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.47745 * 4.41353 * 24 11 9 44 44 H 1.09007 * 109.47248 * 59.99502 * 25 24 11 45 45 H 1.09003 * 109.47447 * 179.97438 * 25 24 11 46 46 H 1.09001 * 109.47050 * 300.00091 * 25 24 11 47 47 H 1.08999 * 109.46722 * 60.00175 * 26 24 11 48 48 H 1.08994 * 109.46986 * 180.02562 * 26 24 11 49 49 H 1.08998 * 109.46958 * 300.00554 * 26 24 11 50 50 H 1.08003 * 120.03708 * 180.25024 * 27 5 4 51 51 H 1.07995 * 119.96886 * 179.70344 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.2741 -0.0002 -0.0037 6 7 5.6713 -0.0002 -0.0090 7 6 6.3473 1.0240 0.5479 8 8 5.7460 1.9018 1.1320 9 6 7.8364 1.0790 0.4464 10 8 8.4345 0.2223 -0.1709 11 7 8.5158 2.0801 1.0403 12 6 7.7894 3.1733 1.6911 13 6 7.3968 2.7518 3.1087 14 7 6.6699 3.8447 3.7592 15 6 7.4011 4.8564 4.5261 16 6 5.3070 3.9205 3.6507 17 1 4.7578 3.1212 3.1756 18 6 4.6312 5.0248 4.1516 19 7 5.2013 6.2109 4.1296 20 14 2.9127 4.8274 4.8568 21 1 2.9987 4.6561 6.3294 22 1 2.1079 6.0359 4.5453 23 1 2.2655 3.6333 4.2565 24 6 9.9808 2.0752 1.0348 25 6 10.4929 3.3823 0.4264 26 6 10.4957 1.9444 2.4697 27 6 3.5777 -1.2024 0.0020 28 6 2.1968 -1.1987 0.0011 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8901 0.5137 32 1 1.6552 2.1327 -0.0005 33 1 4.1161 2.1384 0.0001 34 1 6.1547 -0.7375 -0.4137 35 1 8.4270 4.0561 1.7380 36 1 6.8909 3.4039 1.1187 37 1 6.7593 1.8690 3.0617 38 1 8.2953 2.5212 3.6810 39 1 7.6003 5.7198 3.8911 40 1 6.8025 5.1659 5.3828 41 1 8.3445 4.4365 4.8748 42 1 4.7289 6.9827 4.4792 43 1 10.3392 1.2336 0.4421 44 1 10.1346 4.2240 1.0192 45 1 11.5830 3.3789 0.4228 46 1 10.1261 3.4755 -0.5957 47 1 10.1308 1.0132 2.9031 48 1 11.5856 1.9412 2.4657 49 1 10.1373 2.7860 3.0624 50 1 4.1158 -2.1388 0.0028 51 1 1.6548 -2.1328 0.0007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332741316.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:36 Heat of formation + Delta-G solvation = 1.536250 kcal Electronic energy + Delta-G solvation = -32112.706791 eV Core-core repulsion = 28013.926628 eV Total energy + Delta-G solvation = -4098.780163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.07418 -39.59012 -38.14441 -37.01316 -35.27761 -35.04149 -32.32462 -31.52673 -31.09534 -30.85501 -28.10894 -27.24411 -26.92513 -25.79680 -24.58812 -23.52871 -22.98361 -21.63754 -20.57402 -20.46888 -19.30767 -17.94154 -17.24179 -16.86777 -16.57947 -15.87961 -15.47438 -15.30208 -14.84413 -14.62389 -14.29989 -14.05965 -13.91407 -13.74229 -13.70965 -13.52354 -13.33525 -13.19987 -12.95349 -12.73948 -12.36270 -12.32011 -12.14483 -12.10028 -12.06831 -11.61918 -11.52651 -11.24478 -11.10998 -10.97059 -10.94772 -10.76593 -10.64302 -10.46472 -10.33976 -10.03234 -9.74223 -9.64528 -9.09923 -8.81377 -8.71121 -8.22073 -7.90310 -6.84968 -5.73113 -2.90720 1.13094 1.49637 1.78493 2.40712 3.32300 3.47878 3.53398 3.56765 3.60367 3.89091 4.39184 4.65896 4.84853 4.89750 4.94997 5.08579 5.08956 5.25543 5.29027 5.41607 5.45319 5.45694 5.54780 5.59829 5.60370 5.71117 5.76676 5.79837 5.81385 5.90245 5.92272 6.08140 6.13897 6.17847 6.24406 6.30712 6.36316 6.36743 6.45921 6.53089 6.67871 6.70104 6.80619 6.96555 7.11284 7.18625 7.35116 7.42952 7.61256 7.84349 8.02498 8.17666 8.40184 9.30495 9.97809 10.41572 11.36759 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006920 B = 0.005198 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4045.291973 B = 5385.648017 C = 8954.222409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.095 4.095 4 C -0.115 4.115 5 C 0.144 3.856 6 N -0.651 5.651 7 C 0.490 3.510 8 O -0.447 6.447 9 C 0.509 3.491 10 O -0.542 6.542 11 N -0.567 5.567 12 C 0.071 3.929 13 C 0.149 3.851 14 N -0.593 5.593 15 C 0.156 3.844 16 C -0.240 4.240 17 H 0.084 0.916 18 C 0.000 4.000 19 N -0.896 5.896 20 Si 0.878 3.122 21 H -0.292 1.292 22 H -0.296 1.296 23 H -0.279 1.279 24 C 0.129 3.871 25 C -0.162 4.162 26 C -0.162 4.162 27 C -0.145 4.145 28 C -0.103 4.103 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.145 0.855 34 H 0.417 0.583 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.050 0.950 38 H 0.036 0.964 39 H 0.021 0.979 40 H 0.049 0.951 41 H 0.001 0.999 42 H 0.250 0.750 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.066 0.934 49 H 0.068 0.932 50 H 0.124 0.876 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.842 -12.554 -9.715 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.108 4.108 3 C -0.114 4.114 4 C -0.135 4.135 5 C 0.050 3.950 6 N -0.298 5.298 7 C 0.271 3.729 8 O -0.317 6.317 9 C 0.291 3.709 10 O -0.420 6.420 11 N -0.299 5.299 12 C -0.053 4.053 13 C 0.020 3.980 14 N -0.316 5.316 15 C 0.011 3.989 16 C -0.369 4.369 17 H 0.102 0.898 18 C -0.198 4.198 19 N -0.541 5.541 20 Si 0.708 3.292 21 H -0.219 1.219 22 H -0.223 1.223 23 H -0.204 1.204 24 C 0.026 3.974 25 C -0.219 4.219 26 C -0.220 4.220 27 C -0.165 4.165 28 C -0.122 4.122 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.162 0.838 34 H 0.254 0.746 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.039 0.961 40 H 0.068 0.932 41 H 0.020 0.980 42 H 0.060 0.940 43 H 0.116 0.884 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.142 0.858 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.750 -12.119 -9.514 15.651 hybrid contribution -0.655 -0.187 0.257 0.728 sum 2.095 -12.306 -9.257 15.541 Atomic orbital electron populations 1.20751 0.91350 1.02733 1.01955 1.19911 0.96085 0.93179 1.01605 1.20986 0.93659 0.97741 0.99026 1.21362 0.94335 0.97972 0.99820 1.17731 0.81756 0.94446 1.01052 1.43141 1.04768 1.24330 1.57578 1.20385 0.89108 0.83162 0.80212 1.90984 1.69277 1.35094 1.36318 1.19907 0.87822 0.82740 0.80420 1.90698 1.70012 1.39372 1.41964 1.48240 1.06584 1.23012 1.52091 1.23313 0.96696 0.87525 0.97729 1.21166 0.94702 0.92367 0.89719 1.44139 1.03876 1.27186 1.56357 1.20860 0.91784 0.90589 0.95639 1.19355 0.81211 1.02858 1.33466 0.89794 1.24620 0.97358 0.94642 1.03181 1.70303 1.38713 0.97456 1.47660 0.86581 0.85470 0.77109 0.80028 1.21924 1.22330 1.20384 1.21175 0.78814 0.99727 0.97687 1.22149 1.01142 0.97354 1.01303 1.22222 1.00901 1.03008 0.95904 1.20791 0.94506 0.96163 1.05074 1.20731 0.93172 0.97505 1.00773 0.91489 0.91798 0.91515 0.85605 0.83776 0.74579 0.91089 0.87694 0.93194 0.94602 0.96105 0.93232 0.98047 0.94034 0.88355 0.91491 0.91349 0.92310 0.92270 0.91540 0.91310 0.85818 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 2 C -0.11 -1.33 5.88 -104.58 -0.62 -1.94 16 3 C -0.10 -1.37 9.69 -39.61 -0.38 -1.75 16 4 C -0.11 -1.82 8.68 -39.38 -0.34 -2.16 16 5 C 0.14 2.06 6.37 -83.75 -0.53 1.53 16 6 N -0.65 -8.98 5.34 -10.29 -0.05 -9.03 16 7 C 0.49 7.99 7.30 -11.63 -0.08 7.91 16 8 O -0.45 -8.64 8.23 5.47 0.05 -8.60 16 9 C 0.51 8.14 7.68 -11.63 -0.09 8.05 16 10 O -0.54 -8.90 15.83 5.49 0.09 -8.81 16 11 N -0.57 -8.76 2.39 -166.64 -0.40 -9.15 16 12 C 0.07 1.29 4.64 -4.04 -0.02 1.27 16 13 C 0.15 3.04 5.26 -4.04 -0.02 3.02 16 14 N -0.59 -14.72 2.93 -181.12 -0.53 -15.25 16 15 C 0.16 3.77 9.14 59.85 0.55 4.31 16 16 C -0.24 -6.64 9.64 -15.06 -0.15 -6.79 16 17 H 0.08 2.39 7.39 -52.49 -0.39 2.00 16 18 C 0.00 -0.01 4.71 -17.43 -0.08 -0.09 16 19 N -0.90 -26.20 11.14 55.49 0.62 -25.58 16 20 Si 0.88 22.30 29.66 -169.99 -5.04 17.25 16 21 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 24 C 0.13 1.65 3.25 -67.93 -0.22 1.43 16 25 C -0.16 -1.84 9.10 37.16 0.34 -1.50 16 26 C -0.16 -1.91 8.50 37.16 0.32 -1.60 16 27 C -0.14 -1.74 9.95 -39.38 -0.39 -2.13 16 28 C -0.10 -1.18 9.69 -39.61 -0.38 -1.57 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.14 2.55 6.04 -52.49 -0.32 2.24 16 34 H 0.42 4.79 8.28 -40.82 -0.34 4.45 16 35 H 0.07 1.28 6.21 -51.93 -0.32 0.96 16 36 H 0.11 2.18 5.77 -51.93 -0.30 1.88 16 37 H 0.05 1.09 6.32 -51.93 -0.33 0.76 16 38 H 0.04 0.67 5.83 -51.93 -0.30 0.37 16 39 H 0.02 0.53 7.78 -51.92 -0.40 0.13 16 40 H 0.05 1.31 6.79 -51.93 -0.35 0.95 16 41 H 0.00 0.02 7.83 -51.93 -0.41 -0.39 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.10 1.28 6.91 -51.93 -0.36 0.92 16 44 H 0.07 0.82 6.51 -51.93 -0.34 0.49 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.07 0.89 6.54 -51.93 -0.34 0.55 16 50 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 51 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 403.89 15.07 6.09 6.09 Total: -1.00 -31.64 403.89 -8.79 -40.43 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -7.85 Total: 5.37 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -1.75 Total: 7.29 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.37 Total: -59.02 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.13 Total: -17.41 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.04 Total: 17.25 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.64 -8.79 -40.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332741316.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.966 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds