Wall clock time and date at job start Wed Apr 1 2020 05:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38290 * 119.92536 * 2 1 4 4 C 1.38101 * 120.07472 * 179.97438 * 3 2 1 5 5 C 1.38929 * 119.92164 * 0.22918 * 4 3 2 6 6 N 1.39723 * 120.07496 * 179.72380 * 5 4 3 7 7 C 1.34770 * 119.99963 * 28.56678 * 6 5 4 8 8 O 1.21378 * 120.00001 * 4.90008 * 7 6 5 9 9 C 1.49360 * 120.00241 * 184.90093 * 7 6 5 10 10 O 1.21362 * 119.99354 * 2.15101 * 9 7 6 11 11 N 1.34775 * 120.00197 * 182.14587 * 9 7 6 12 12 C 1.46501 * 120.00095 * 354.97643 * 11 9 7 13 13 C 1.53007 * 109.46842 * 83.50634 * 12 11 9 14 14 N 1.46493 * 109.46832 * 180.02562 * 13 12 11 15 15 C 1.46501 * 119.99964 * 269.99567 * 14 13 12 16 16 C 1.36933 * 120.00204 * 90.00366 * 14 13 12 17 17 H 1.07995 * 120.00223 * 6.44715 * 16 14 13 18 18 C 1.38816 * 120.00135 * 186.44352 * 16 14 13 19 19 N 1.31621 * 119.99830 * 32.87733 * 18 16 14 20 20 Si 1.86802 * 120.00298 * 212.87710 * 18 16 14 21 21 H 1.48504 * 109.46781 * 94.99800 * 20 18 16 22 22 H 1.48496 * 109.47413 * 214.99769 * 20 18 16 23 23 H 1.48498 * 109.46877 * 335.00294 * 20 18 16 24 24 C 1.46493 * 119.99710 * 174.98147 * 11 9 7 25 25 C 1.53003 * 109.47139 * 124.41181 * 24 11 9 26 26 C 1.53006 * 109.47142 * 244.40674 * 24 11 9 27 27 C 1.38936 * 119.84723 * 359.49704 * 5 4 3 28 28 C 1.38090 * 119.92555 * 0.52383 * 27 5 4 29 29 H 1.08999 * 109.47007 * 89.99757 * 1 2 3 30 30 H 1.09000 * 109.47561 * 210.00298 * 1 2 3 31 31 H 1.09005 * 109.47131 * 330.00938 * 1 2 3 32 32 H 1.07994 * 119.96397 * 359.96924 * 3 2 1 33 33 H 1.07995 * 120.03918 * 179.97438 * 4 3 2 34 34 H 0.97002 * 120.00020 * 208.57187 * 6 5 4 35 35 H 1.08995 * 109.47436 * 203.50532 * 12 11 9 36 36 H 1.08999 * 109.47248 * 323.50806 * 12 11 9 37 37 H 1.09002 * 109.46721 * 300.00384 * 13 12 11 38 38 H 1.08999 * 109.47059 * 60.00056 * 13 12 11 39 39 H 1.09008 * 109.46708 * 95.25685 * 15 14 13 40 40 H 1.08997 * 109.47819 * 215.25780 * 15 14 13 41 41 H 1.08999 * 109.47458 * 335.25922 * 15 14 13 42 42 H 0.97005 * 119.99966 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.47745 * 4.41353 * 24 11 9 44 44 H 1.09007 * 109.47248 * 59.99502 * 25 24 11 45 45 H 1.09003 * 109.47447 * 179.97438 * 25 24 11 46 46 H 1.09001 * 109.47050 * 300.00091 * 25 24 11 47 47 H 1.08999 * 109.46722 * 60.00175 * 26 24 11 48 48 H 1.08994 * 109.46986 * 180.02562 * 26 24 11 49 49 H 1.08998 * 109.46958 * 300.00554 * 26 24 11 50 50 H 1.08003 * 120.03708 * 180.25024 * 27 5 4 51 51 H 1.07995 * 119.96886 * 179.70344 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.2741 -0.0002 -0.0037 6 7 5.6713 -0.0002 -0.0090 7 6 6.3473 1.0240 0.5479 8 8 5.7460 1.9018 1.1320 9 6 7.8364 1.0790 0.4464 10 8 8.4345 0.2223 -0.1709 11 7 8.5158 2.0801 1.0403 12 6 7.7894 3.1733 1.6911 13 6 7.3968 2.7518 3.1087 14 7 6.6699 3.8447 3.7592 15 6 7.4011 4.8564 4.5261 16 6 5.3070 3.9205 3.6507 17 1 4.7578 3.1212 3.1756 18 6 4.6312 5.0248 4.1516 19 7 5.2013 6.2109 4.1296 20 14 2.9127 4.8274 4.8568 21 1 2.9987 4.6561 6.3294 22 1 2.1079 6.0359 4.5453 23 1 2.2655 3.6333 4.2565 24 6 9.9808 2.0752 1.0348 25 6 10.4929 3.3823 0.4264 26 6 10.4957 1.9444 2.4697 27 6 3.5777 -1.2024 0.0020 28 6 2.1968 -1.1987 0.0011 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8901 0.5137 32 1 1.6552 2.1327 -0.0005 33 1 4.1161 2.1384 0.0001 34 1 6.1547 -0.7375 -0.4137 35 1 8.4270 4.0561 1.7380 36 1 6.8909 3.4039 1.1187 37 1 6.7593 1.8690 3.0617 38 1 8.2953 2.5212 3.6810 39 1 7.6003 5.7198 3.8911 40 1 6.8025 5.1659 5.3828 41 1 8.3445 4.4365 4.8748 42 1 4.7289 6.9827 4.4792 43 1 10.3392 1.2336 0.4421 44 1 10.1346 4.2240 1.0192 45 1 11.5830 3.3789 0.4228 46 1 10.1261 3.4755 -0.5957 47 1 10.1308 1.0132 2.9031 48 1 11.5856 1.9412 2.4657 49 1 10.1373 2.7860 3.0624 50 1 4.1158 -2.1388 0.0028 51 1 1.6548 -2.1328 0.0007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332741316.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:34 Heat of formation + Delta-G solvation = -16.440205 kcal Electronic energy + Delta-G solvation = -32113.486309 eV Core-core repulsion = 28013.926628 eV Total energy + Delta-G solvation = -4099.559681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.33609 -40.73728 -39.32124 -38.43148 -37.05285 -36.18397 -33.80714 -32.85349 -32.52261 -31.88648 -29.77801 -28.18762 -27.95918 -27.85482 -25.77521 -25.21823 -24.05032 -22.68295 -22.40384 -21.60181 -20.52001 -19.16473 -18.76075 -18.44671 -17.95215 -17.21808 -16.80972 -16.58300 -16.34812 -15.93573 -15.63083 -15.51191 -15.25872 -15.09867 -14.84011 -14.68808 -14.59025 -14.47125 -14.35814 -14.01119 -13.95248 -13.37179 -13.33914 -13.20157 -13.10176 -12.98797 -12.85280 -12.76622 -12.65036 -12.41844 -12.28885 -12.20302 -12.07226 -12.00895 -11.85612 -11.72537 -11.63447 -11.13864 -10.48553 -10.39796 -9.95645 -9.87090 -8.97524 -8.87827 -7.88559 -5.06754 -0.03932 0.45583 0.61668 1.20477 1.42951 1.46658 1.54928 2.05202 2.29275 2.57758 2.84010 3.15824 3.24444 3.80776 3.86954 3.92305 4.01639 4.09151 4.12022 4.12215 4.29640 4.38736 4.47777 4.51037 4.55144 4.61378 4.63779 4.75923 4.82090 4.83648 4.87039 4.87327 4.94250 5.03574 5.05815 5.10153 5.14845 5.28313 5.30710 5.31961 5.36428 5.41016 5.43881 5.52276 5.61224 5.70373 5.83146 5.96593 6.07299 6.15345 6.32589 6.63085 6.90449 7.18399 7.93247 8.31569 9.20015 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006920 B = 0.005198 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4045.291973 B = 5385.648017 C = 8954.222409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.107 4.107 3 C -0.117 4.117 4 C -0.141 4.141 5 C 0.124 3.876 6 N -0.635 5.635 7 C 0.486 3.514 8 O -0.484 6.484 9 C 0.512 3.488 10 O -0.543 6.543 11 N -0.564 5.564 12 C 0.096 3.904 13 C 0.155 3.845 14 N -0.608 5.608 15 C 0.170 3.830 16 C -0.236 4.236 17 H 0.070 0.930 18 C -0.049 4.049 19 N -0.923 5.923 20 Si 0.933 3.067 21 H -0.290 1.290 22 H -0.297 1.297 23 H -0.278 1.278 24 C 0.123 3.877 25 C -0.157 4.157 26 C -0.158 4.158 27 C -0.136 4.136 28 C -0.100 4.100 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.429 0.571 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.058 0.942 39 H 0.001 0.999 40 H 0.021 0.979 41 H 0.039 0.961 42 H 0.246 0.754 43 H 0.103 0.897 44 H 0.055 0.945 45 H 0.097 0.903 46 H 0.052 0.948 47 H 0.052 0.948 48 H 0.096 0.904 49 H 0.056 0.944 50 H 0.155 0.845 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.299 -15.206 -10.039 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.108 4.108 3 C -0.136 4.136 4 C -0.161 4.161 5 C 0.030 3.970 6 N -0.283 5.283 7 C 0.268 3.732 8 O -0.356 6.356 9 C 0.294 3.706 10 O -0.422 6.422 11 N -0.297 5.297 12 C -0.029 4.029 13 C 0.028 3.972 14 N -0.331 5.331 15 C 0.025 3.975 16 C -0.365 4.365 17 H 0.088 0.912 18 C -0.244 4.244 19 N -0.571 5.571 20 Si 0.763 3.237 21 H -0.218 1.218 22 H -0.225 1.225 23 H -0.203 1.203 24 C 0.022 3.978 25 C -0.214 4.214 26 C -0.216 4.216 27 C -0.156 4.156 28 C -0.118 4.118 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.268 0.732 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.019 0.981 40 H 0.040 0.960 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.121 0.879 44 H 0.074 0.926 45 H 0.116 0.884 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.114 0.886 49 H 0.075 0.925 50 H 0.173 0.827 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.232 -14.830 -9.870 18.105 hybrid contribution -0.780 0.509 0.268 0.969 sum 2.453 -14.321 -9.602 17.416 Atomic orbital electron populations 1.20812 0.89209 1.03428 1.03220 1.20284 0.97723 0.92695 1.00074 1.21106 0.93251 0.98927 1.00311 1.21242 0.95184 0.97624 1.02035 1.17898 0.81784 0.94904 1.02416 1.43023 1.04843 1.23851 1.56596 1.20563 0.89363 0.83260 0.80052 1.90991 1.69875 1.36506 1.38243 1.19855 0.87646 0.82740 0.80383 1.90691 1.70015 1.39369 1.42107 1.48187 1.07768 1.22056 1.51648 1.22659 0.95985 0.88234 0.96023 1.21192 0.94675 0.90420 0.90918 1.44302 1.03482 1.28032 1.57256 1.20652 0.92643 0.90130 0.94106 1.19384 0.82798 1.01934 1.32431 0.91236 1.25177 1.00406 0.94586 1.04204 1.70390 1.39945 0.97720 1.49023 0.85714 0.82140 0.76713 0.79105 1.21769 1.22481 1.20275 1.21459 0.76780 1.00715 0.98837 1.22127 1.02928 0.95905 1.00479 1.22196 1.02769 1.02053 0.94534 1.21165 0.95038 0.96236 1.03199 1.21192 0.93085 0.98518 0.99038 0.89844 0.89895 0.92040 0.85928 0.86936 0.73198 0.90721 0.90557 0.94680 0.92389 0.98063 0.95986 0.94280 0.94448 0.87944 0.92592 0.88445 0.92907 0.92871 0.88576 0.92523 0.82730 0.82302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 10.01 71.24 0.71 -1.17 16 2 C -0.11 -2.51 5.88 -19.84 -0.12 -2.62 16 3 C -0.12 -3.48 9.69 22.25 0.22 -3.26 16 4 C -0.14 -4.73 8.68 22.40 0.19 -4.53 16 5 C 0.12 3.55 6.37 38.22 0.24 3.80 16 6 N -0.64 -17.59 5.34 -304.83 -1.63 -19.22 16 7 C 0.49 16.35 7.30 87.24 0.64 16.99 16 8 O -0.48 -19.84 8.23 -3.34 -0.03 -19.87 16 9 C 0.51 16.30 7.68 87.24 0.67 16.96 16 10 O -0.54 -17.24 15.83 -3.28 -0.05 -17.29 16 11 N -0.56 -17.25 2.39 -799.50 -1.91 -19.15 16 12 C 0.10 3.53 4.64 86.38 0.40 3.93 16 13 C 0.16 6.37 5.26 86.38 0.45 6.83 16 14 N -0.61 -30.68 2.93 -726.94 -2.13 -32.81 16 15 C 0.17 8.24 9.14 127.77 1.17 9.41 16 16 C -0.24 -13.42 9.64 84.03 0.81 -12.61 16 17 H 0.07 4.13 7.39 -2.91 -0.02 4.11 16 18 C -0.05 -2.83 4.71 84.86 0.40 -2.43 16 19 N -0.92 -55.51 11.14 21.65 0.24 -55.27 16 20 Si 0.93 47.14 29.66 68.60 2.03 49.17 16 21 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 22 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 23 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 24 C 0.12 2.95 3.25 45.00 0.15 3.10 16 25 C -0.16 -3.27 9.10 71.98 0.66 -2.62 16 26 C -0.16 -3.33 8.50 71.98 0.61 -2.72 16 27 C -0.14 -2.98 9.95 22.40 0.22 -2.76 16 28 C -0.10 -2.01 9.69 22.25 0.22 -1.79 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 31 H 0.06 1.12 8.08 -2.38 -0.02 1.10 16 32 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 33 H 0.11 4.44 6.04 -2.91 -0.02 4.42 16 34 H 0.43 9.46 8.28 -92.71 -0.77 8.69 16 35 H 0.07 2.71 6.21 -2.39 -0.01 2.69 16 36 H 0.08 3.34 5.77 -2.39 -0.01 3.33 16 37 H 0.03 1.55 6.32 -2.39 -0.02 1.54 16 38 H 0.06 2.12 5.83 -2.39 -0.01 2.10 16 39 H 0.00 0.06 7.78 -2.38 -0.02 0.04 16 40 H 0.02 1.16 6.79 -2.39 -0.02 1.14 16 41 H 0.04 1.57 7.83 -2.39 -0.02 1.55 16 42 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 43 H 0.10 2.43 6.91 -2.39 -0.02 2.41 16 44 H 0.06 1.30 6.51 -2.38 -0.02 1.29 16 45 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 46 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.06 1.35 6.54 -2.39 -0.02 1.33 16 50 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 51 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -70.71 403.89 4.35 -66.36 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.18 Total: 23.58 kcal Atomic # 6 Polarization: 16.86 SS G_CDS: 7.64 Total: 24.50 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -5.42 Total: -126.46 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.08 Total: -37.16 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -70.71 4.35 -66.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332741316.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.923 kcal (2) G-P(sol) polarization free energy of solvation -70.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds