Wall clock time and date at job start Wed Apr 1 2020 05:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38067 * 119.99506 * 2 1 4 4 C 1.38885 * 119.99446 * 179.97438 * 3 2 1 5 5 N 1.39910 * 120.00593 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00254 * 354.28789 * 5 4 3 7 7 C 1.46506 * 119.99880 * 174.29025 * 5 4 3 8 8 C 1.38877 * 119.98631 * 359.97438 * 4 3 2 9 9 C 1.38075 * 119.99833 * 0.04317 * 8 4 3 10 10 C 1.50700 * 119.99945 * 179.97438 * 9 8 4 11 11 C 1.38833 * 119.99596 * 180.02562 * 2 1 3 12 12 N 1.40197 * 119.99730 * 0.02562 * 11 2 1 13 13 C 1.34781 * 119.99870 * 47.05107 * 12 11 2 14 14 O 1.21589 * 119.99927 * 3.45513 * 13 12 11 15 15 N 1.34774 * 120.00050 * 183.45752 * 13 12 11 16 16 C 1.47428 * 125.64881 * 359.68729 * 15 13 12 17 17 C 1.55126 * 104.72236 * 155.82080 * 16 15 13 18 18 C 1.55154 * 101.48764 * 37.29464 * 17 16 15 19 19 O 1.42905 * 110.72007 * 82.69776 * 18 17 16 20 20 C 1.50703 * 110.87355 * 205.90127 * 18 17 16 21 21 H 1.08000 * 119.99607 * 355.05695 * 20 18 17 22 22 C 1.37874 * 119.99771 * 175.06818 * 20 18 17 23 23 N 1.31509 * 120.00454 * 359.97438 * 22 20 18 24 24 Si 1.86799 * 119.99552 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47533 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47247 * 119.99858 * 24 22 20 27 27 H 1.48502 * 109.47112 * 239.99596 * 24 22 20 28 28 C 1.47025 * 125.65106 * 180.02562 * 15 13 12 29 29 H 1.08995 * 109.46753 * 82.67184 * 1 2 3 30 30 H 1.08997 * 109.46922 * 202.67334 * 1 2 3 31 31 H 1.09002 * 109.46970 * 322.67074 * 1 2 3 32 32 H 1.07998 * 120.00686 * 359.72737 * 3 2 1 33 33 H 1.09004 * 109.46756 * 5.07346 * 6 5 4 34 34 H 1.08999 * 109.47112 * 125.07613 * 6 5 4 35 35 H 1.09002 * 109.47222 * 245.07818 * 6 5 4 36 36 H 1.08995 * 109.46966 * 89.99752 * 7 5 4 37 37 H 1.08995 * 109.47123 * 209.99500 * 7 5 4 38 38 H 1.08996 * 109.47306 * 329.99524 * 7 5 4 39 39 H 1.08006 * 120.00309 * 180.02562 * 8 4 3 40 40 H 1.09000 * 109.47456 * 274.80351 * 10 9 8 41 41 H 1.09007 * 109.46598 * 34.80154 * 10 9 8 42 42 H 1.08997 * 109.46944 * 154.79281 * 10 9 8 43 43 H 0.96993 * 120.00274 * 227.04596 * 12 11 2 44 44 H 1.08998 * 110.37120 * 274.74932 * 16 15 13 45 45 H 1.09003 * 110.36808 * 37.07103 * 16 15 13 46 46 H 1.09006 * 111.19038 * 279.19114 * 17 16 15 47 47 H 1.08995 * 110.90808 * 155.27916 * 17 16 15 48 48 H 0.96697 * 114.00230 * 185.02255 * 19 18 17 49 49 H 0.96995 * 120.00021 * 180.02562 * 23 22 20 50 50 H 1.09007 * 109.87798 * 300.43523 * 28 15 13 51 51 H 1.08997 * 109.88382 * 61.44313 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1958 0.0000 4 6 3.5862 1.1957 0.0005 5 7 4.2859 2.4073 0.0000 6 6 3.5591 3.6729 -0.1274 7 6 5.7454 2.4104 0.1268 8 6 4.2803 -0.0071 0.0016 9 6 3.5895 -1.2027 0.0012 10 6 4.3427 -2.5080 0.0018 11 6 2.2012 -1.2024 -0.0005 12 7 1.5000 -2.4164 -0.0016 13 6 0.4747 -2.6017 -0.8565 14 8 0.1977 -1.7408 -1.6693 15 7 -0.2437 -3.7411 -0.8104 16 6 -0.0139 -4.8648 0.1158 17 6 -1.3852 -5.5838 0.2113 18 6 -1.9016 -5.4591 -1.2465 19 8 -1.3458 -6.4867 -2.0694 20 6 -3.4075 -5.5015 -1.2881 21 1 -3.9676 -5.6870 -0.3836 22 6 -4.0699 -5.3037 -2.4810 23 7 -3.3878 -5.0775 -3.5824 24 14 -5.9364 -5.3570 -2.5327 25 1 -6.4619 -5.6267 -1.1703 26 1 -6.4557 -4.0519 -3.0147 27 1 -6.3755 -6.4353 -3.4546 28 6 -1.3820 -4.0722 -1.6801 29 1 -0.3632 0.1311 -1.0192 30 1 -0.3633 -0.9482 0.3961 31 1 -0.3633 0.8172 0.6232 32 1 1.6574 2.1311 -0.0045 33 1 2.4866 3.4783 -0.1195 34 1 3.8162 4.3252 0.7072 35 1 3.8336 4.1568 -1.0647 36 1 6.1963 2.3592 -0.8642 37 1 6.0650 3.3259 0.6245 38 1 6.0609 1.5483 0.7144 39 1 5.3603 -0.0075 0.0025 40 1 4.5995 -2.7798 -1.0220 41 1 5.2548 -2.4009 0.5890 42 1 3.7186 -3.2873 0.4391 43 1 1.7529 -3.1231 0.6128 44 1 0.7431 -5.5386 -0.2856 45 1 0.2884 -4.4936 1.0950 46 1 -2.0507 -5.0721 0.9066 47 1 -1.2576 -6.6290 0.4926 48 1 -1.5757 -6.4085 -3.0054 49 1 -3.8539 -4.9380 -4.4215 50 1 -2.1690 -3.3276 -1.5601 51 1 -1.0571 -4.1038 -2.7200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364102410.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:26 Heat of formation + Delta-G solvation = -25.604626 kcal Electronic energy + Delta-G solvation = -31577.871349 eV Core-core repulsion = 27477.914269 eV Total energy + Delta-G solvation = -4099.957080 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.62084 -39.21260 -37.66254 -36.41423 -34.35621 -33.70736 -33.32174 -32.21836 -30.42536 -29.53394 -28.97227 -27.83538 -26.88683 -26.01417 -25.25978 -24.28865 -22.68984 -20.81364 -20.40792 -19.59126 -19.29987 -17.91113 -17.15594 -17.08071 -16.34247 -16.18213 -15.36267 -15.22739 -14.97966 -14.64273 -14.39886 -14.07896 -13.92198 -13.56728 -13.36350 -13.23172 -12.95590 -12.93585 -12.80776 -12.79600 -12.76731 -12.27967 -12.17784 -11.97508 -11.72646 -11.68076 -11.58224 -11.47980 -11.28535 -11.05305 -10.83226 -10.76409 -10.66311 -10.46039 -10.18134 -10.00820 -9.46765 -9.31518 -8.88980 -8.67756 -8.43081 -8.30990 -7.79613 -7.00691 -6.27341 -4.35835 1.49246 1.66307 3.01092 3.14056 3.21938 3.30155 3.33363 3.66996 3.97020 4.27303 4.42999 4.71629 4.79496 4.94087 5.00502 5.06132 5.12553 5.22958 5.32673 5.36579 5.37491 5.45260 5.49892 5.56074 5.60787 5.64534 5.69670 5.77026 5.83206 5.88820 6.00239 6.05891 6.08735 6.12613 6.26038 6.33148 6.50630 6.57487 6.71764 6.77891 6.81914 6.88878 7.01209 7.13825 7.18138 7.26918 7.33207 7.51571 7.63412 7.74234 8.04622 8.49637 8.68193 9.14026 9.30316 9.39041 10.80432 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.002537 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.431341 B =11033.200602 C =11909.931910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.022 4.022 3 C -0.190 4.190 4 C 0.204 3.796 5 N -0.643 5.643 6 C 0.092 3.908 7 C 0.098 3.902 8 C -0.189 4.189 9 C -0.057 4.057 10 C -0.108 4.108 11 C 0.114 3.886 12 N -0.689 5.689 13 C 0.712 3.288 14 O -0.578 6.578 15 N -0.629 5.629 16 C 0.101 3.899 17 C -0.115 4.115 18 C 0.248 3.752 19 O -0.585 6.585 20 C -0.536 4.536 21 H 0.067 0.933 22 C 0.070 3.930 23 N -0.893 5.893 24 Si 0.903 3.097 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.124 3.876 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.124 0.876 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.121 0.879 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.398 0.602 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.382 0.618 49 H 0.269 0.731 50 H 0.064 0.936 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.237 11.388 9.584 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.025 4.025 3 C -0.213 4.213 4 C 0.104 3.896 5 N -0.357 5.357 6 C -0.051 4.051 7 C -0.045 4.045 8 C -0.212 4.212 9 C -0.060 4.060 10 C -0.165 4.165 11 C 0.018 3.982 12 N -0.340 5.340 13 C 0.415 3.585 14 O -0.455 6.455 15 N -0.366 5.366 16 C -0.023 4.023 17 C -0.153 4.153 18 C 0.207 3.793 19 O -0.394 6.394 20 C -0.575 4.575 21 H 0.085 0.915 22 C -0.133 4.133 23 N -0.531 5.531 24 Si 0.730 3.270 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 C 0.002 3.998 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.141 0.859 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.139 0.861 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.234 0.766 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.232 0.768 49 H 0.079 0.921 50 H 0.083 0.917 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.317 12.030 9.338 22.320 hybrid contribution -1.014 -0.047 -0.458 1.114 sum 15.303 11.983 8.880 21.369 Atomic orbital electron populations 1.20926 0.90536 1.01183 1.03144 1.19600 0.96292 0.91088 0.95486 1.20372 0.91744 0.97638 1.11516 1.17700 0.90960 0.85455 0.95459 1.46223 1.05227 1.03238 1.80971 1.21649 0.98024 0.85054 1.00406 1.21530 0.80042 1.02208 1.00738 1.20210 0.98971 0.90010 1.11990 1.19486 0.91806 0.95178 0.99573 1.20671 0.99355 0.93986 1.02466 1.16870 0.89299 0.84783 1.07237 1.42583 1.34601 1.16238 1.40570 1.15453 0.79420 0.82054 0.81557 1.90903 1.71137 1.43019 1.40491 1.47981 1.34239 1.15573 1.38803 1.22312 0.99432 0.88647 0.91873 1.22751 0.94026 0.99903 0.98624 1.19517 0.91338 0.82612 0.85818 1.86104 1.76824 1.52646 1.23833 1.21517 0.90630 1.50207 0.95109 0.91519 1.25070 0.99316 0.93413 0.95491 1.69704 1.36088 1.47882 0.99459 0.86364 0.84585 0.77766 0.78279 1.19611 1.20781 1.20774 1.22867 0.84568 0.99439 0.92901 0.88965 0.92217 0.93295 0.85879 0.90327 0.92985 0.93318 0.93764 0.91939 0.91496 0.86088 0.91021 0.91607 0.91950 0.76602 0.91926 0.92629 0.90458 0.90621 0.76752 0.92063 0.91717 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 8.07 36.01 0.29 -1.40 16 2 C -0.02 -0.34 5.48 -104.46 -0.57 -0.92 16 3 C -0.19 -2.63 8.99 -39.40 -0.35 -2.98 16 4 C 0.20 2.59 6.54 -83.69 -0.55 2.05 16 5 N -0.64 -6.54 3.42 -187.49 -0.64 -7.18 16 6 C 0.09 0.74 10.63 59.85 0.64 1.38 16 7 C 0.10 0.73 10.10 59.85 0.60 1.33 16 8 C -0.19 -2.33 8.83 -39.40 -0.35 -2.67 16 9 C -0.06 -0.77 5.89 -104.46 -0.62 -1.38 16 10 C -0.11 -1.15 9.82 36.01 0.35 -0.79 16 11 C 0.11 1.79 5.97 -83.59 -0.50 1.29 16 12 N -0.69 -11.00 4.42 -14.18 -0.06 -11.07 16 13 C 0.71 14.29 6.57 -86.92 -0.57 13.72 16 14 O -0.58 -13.49 12.93 5.29 0.07 -13.42 16 15 N -0.63 -12.80 3.32 -176.09 -0.59 -13.39 16 16 C 0.10 1.72 6.55 -2.41 -0.02 1.71 16 17 C -0.12 -2.23 6.24 -24.47 -0.15 -2.39 16 18 C 0.25 5.89 0.85 -89.94 -0.08 5.82 16 19 O -0.59 -14.53 13.07 -35.23 -0.46 -14.99 16 20 C -0.54 -13.87 8.13 -34.44 -0.28 -14.15 16 21 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 22 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 23 N -0.89 -23.72 10.96 55.43 0.61 -23.11 16 24 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 C 0.12 2.99 5.23 -3.06 -0.02 2.97 16 29 H 0.09 1.75 6.74 -51.93 -0.35 1.40 16 30 H 0.06 1.08 5.95 -51.93 -0.31 0.77 16 31 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 32 H 0.12 1.48 5.73 -52.49 -0.30 1.18 16 33 H 0.08 0.65 5.31 -51.93 -0.28 0.38 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.35 8.07 -51.93 -0.42 -0.07 16 38 H 0.07 0.47 6.45 -51.93 -0.34 0.13 16 39 H 0.12 1.22 6.30 -52.48 -0.33 0.89 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.56 8.12 -51.92 -0.42 0.13 16 42 H 0.06 0.63 6.59 -51.93 -0.34 0.29 16 43 H 0.40 5.29 6.14 -40.82 -0.25 5.04 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 0.76 7.34 -51.93 -0.38 0.38 16 46 H 0.08 1.45 8.05 -51.93 -0.42 1.03 16 47 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 48 H 0.38 9.76 7.45 45.56 0.34 10.10 16 49 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 50 H 0.06 1.70 7.82 -51.93 -0.41 1.30 16 51 H 0.06 1.68 7.92 -51.93 -0.41 1.27 16 LS Contribution 395.21 15.07 5.96 5.96 Total: -1.00 -30.62 395.21 -9.51 -40.13 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -7.11 Total: 16.38 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -2.26 Total: 5.31 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.68 Total: -54.75 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.39 Total: -28.41 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.62 -9.51 -40.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364102410.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.523 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds