Wall clock time and date at job start Wed Apr 1 2020 05:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38067 * 119.99506 * 2 1 4 4 C 1.38885 * 119.99446 * 179.97438 * 3 2 1 5 5 N 1.39910 * 120.00593 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00254 * 354.28789 * 5 4 3 7 7 C 1.46506 * 119.99880 * 174.29025 * 5 4 3 8 8 C 1.38877 * 119.98631 * 359.97438 * 4 3 2 9 9 C 1.38075 * 119.99833 * 0.04317 * 8 4 3 10 10 C 1.50700 * 119.99945 * 179.97438 * 9 8 4 11 11 C 1.38833 * 119.99596 * 180.02562 * 2 1 3 12 12 N 1.40197 * 119.99730 * 0.02562 * 11 2 1 13 13 C 1.34781 * 119.99870 * 47.05107 * 12 11 2 14 14 O 1.21589 * 119.99927 * 3.45513 * 13 12 11 15 15 N 1.34774 * 120.00050 * 183.45752 * 13 12 11 16 16 C 1.47428 * 125.64881 * 359.68729 * 15 13 12 17 17 C 1.55126 * 104.72236 * 155.82080 * 16 15 13 18 18 C 1.55154 * 101.48764 * 37.29464 * 17 16 15 19 19 O 1.42905 * 110.72007 * 82.69776 * 18 17 16 20 20 C 1.50703 * 110.87355 * 205.90127 * 18 17 16 21 21 H 1.08000 * 119.99607 * 355.05695 * 20 18 17 22 22 C 1.37874 * 119.99771 * 175.06818 * 20 18 17 23 23 N 1.31509 * 120.00454 * 359.97438 * 22 20 18 24 24 Si 1.86799 * 119.99552 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47533 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47247 * 119.99858 * 24 22 20 27 27 H 1.48502 * 109.47112 * 239.99596 * 24 22 20 28 28 C 1.47025 * 125.65106 * 180.02562 * 15 13 12 29 29 H 1.08995 * 109.46753 * 82.67184 * 1 2 3 30 30 H 1.08997 * 109.46922 * 202.67334 * 1 2 3 31 31 H 1.09002 * 109.46970 * 322.67074 * 1 2 3 32 32 H 1.07998 * 120.00686 * 359.72737 * 3 2 1 33 33 H 1.09004 * 109.46756 * 5.07346 * 6 5 4 34 34 H 1.08999 * 109.47112 * 125.07613 * 6 5 4 35 35 H 1.09002 * 109.47222 * 245.07818 * 6 5 4 36 36 H 1.08995 * 109.46966 * 89.99752 * 7 5 4 37 37 H 1.08995 * 109.47123 * 209.99500 * 7 5 4 38 38 H 1.08996 * 109.47306 * 329.99524 * 7 5 4 39 39 H 1.08006 * 120.00309 * 180.02562 * 8 4 3 40 40 H 1.09000 * 109.47456 * 274.80351 * 10 9 8 41 41 H 1.09007 * 109.46598 * 34.80154 * 10 9 8 42 42 H 1.08997 * 109.46944 * 154.79281 * 10 9 8 43 43 H 0.96993 * 120.00274 * 227.04596 * 12 11 2 44 44 H 1.08998 * 110.37120 * 274.74932 * 16 15 13 45 45 H 1.09003 * 110.36808 * 37.07103 * 16 15 13 46 46 H 1.09006 * 111.19038 * 279.19114 * 17 16 15 47 47 H 1.08995 * 110.90808 * 155.27916 * 17 16 15 48 48 H 0.96697 * 114.00230 * 185.02255 * 19 18 17 49 49 H 0.96995 * 120.00021 * 180.02562 * 23 22 20 50 50 H 1.09007 * 109.87798 * 300.43523 * 28 15 13 51 51 H 1.08997 * 109.88382 * 61.44313 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1958 0.0000 4 6 3.5862 1.1957 0.0005 5 7 4.2859 2.4073 0.0000 6 6 3.5591 3.6729 -0.1274 7 6 5.7454 2.4104 0.1268 8 6 4.2803 -0.0071 0.0016 9 6 3.5895 -1.2027 0.0012 10 6 4.3427 -2.5080 0.0018 11 6 2.2012 -1.2024 -0.0005 12 7 1.5000 -2.4164 -0.0016 13 6 0.4747 -2.6017 -0.8565 14 8 0.1977 -1.7408 -1.6693 15 7 -0.2437 -3.7411 -0.8104 16 6 -0.0139 -4.8648 0.1158 17 6 -1.3852 -5.5838 0.2113 18 6 -1.9016 -5.4591 -1.2465 19 8 -1.3458 -6.4867 -2.0694 20 6 -3.4075 -5.5015 -1.2881 21 1 -3.9676 -5.6870 -0.3836 22 6 -4.0699 -5.3037 -2.4810 23 7 -3.3878 -5.0775 -3.5824 24 14 -5.9364 -5.3570 -2.5327 25 1 -6.4619 -5.6267 -1.1703 26 1 -6.4557 -4.0519 -3.0147 27 1 -6.3755 -6.4353 -3.4546 28 6 -1.3820 -4.0722 -1.6801 29 1 -0.3632 0.1311 -1.0192 30 1 -0.3633 -0.9482 0.3961 31 1 -0.3633 0.8172 0.6232 32 1 1.6574 2.1311 -0.0045 33 1 2.4866 3.4783 -0.1195 34 1 3.8162 4.3252 0.7072 35 1 3.8336 4.1568 -1.0647 36 1 6.1963 2.3592 -0.8642 37 1 6.0650 3.3259 0.6245 38 1 6.0609 1.5483 0.7144 39 1 5.3603 -0.0075 0.0025 40 1 4.5995 -2.7798 -1.0220 41 1 5.2548 -2.4009 0.5890 42 1 3.7186 -3.2873 0.4391 43 1 1.7529 -3.1231 0.6128 44 1 0.7431 -5.5386 -0.2856 45 1 0.2884 -4.4936 1.0950 46 1 -2.0507 -5.0721 0.9066 47 1 -1.2576 -6.6290 0.4926 48 1 -1.5757 -6.4085 -3.0054 49 1 -3.8539 -4.9380 -4.4215 50 1 -2.1690 -3.3276 -1.5601 51 1 -1.0571 -4.1038 -2.7200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364102410.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:25 Heat of formation + Delta-G solvation = -45.555893 kcal Electronic energy + Delta-G solvation = -31578.736501 eV Core-core repulsion = 27477.914269 eV Total energy + Delta-G solvation = -4100.822232 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.93320 -40.50103 -39.18159 -37.54093 -36.10224 -34.97918 -34.41843 -34.22350 -31.86469 -30.78545 -29.68224 -29.56763 -28.08954 -26.95248 -26.89102 -25.40955 -24.20562 -22.00310 -21.57611 -21.25872 -20.60859 -19.39010 -18.95702 -18.33047 -17.46671 -17.34723 -17.04522 -16.56415 -16.16677 -16.08405 -15.90409 -15.23301 -14.97628 -14.83934 -14.78383 -14.66533 -14.46510 -14.13583 -14.05230 -13.96917 -13.67020 -13.49623 -13.31964 -13.29739 -12.95976 -12.86837 -12.77078 -12.67271 -12.59407 -12.51468 -12.45809 -12.29574 -12.24649 -12.08093 -11.82012 -11.32209 -11.16513 -10.97747 -10.65556 -10.28062 -10.03241 -9.49121 -9.40474 -8.25754 -7.97040 -6.41291 0.46245 0.56862 1.39717 1.43199 1.53761 1.67141 2.16355 2.28571 2.38049 2.87046 3.01177 3.05694 3.80293 3.82358 3.89787 4.05666 4.12460 4.17766 4.32331 4.37785 4.43649 4.46953 4.48201 4.56336 4.58419 4.63013 4.69004 4.73406 4.77491 4.80924 4.83336 4.88650 4.94793 5.01407 5.06391 5.11278 5.13752 5.20223 5.23784 5.36129 5.36752 5.40805 5.51973 5.66198 5.70828 5.75727 6.00708 6.04991 6.19010 6.40485 6.58616 6.65767 7.03802 7.28264 7.35714 7.61092 8.80418 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.002537 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.431341 B =11033.200602 C =11909.931910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.043 4.043 3 C -0.203 4.203 4 C 0.207 3.793 5 N -0.645 5.645 6 C 0.085 3.915 7 C 0.091 3.909 8 C -0.190 4.190 9 C -0.054 4.054 10 C -0.108 4.108 11 C 0.078 3.922 12 N -0.667 5.667 13 C 0.710 3.290 14 O -0.619 6.619 15 N -0.634 5.634 16 C 0.105 3.895 17 C -0.109 4.109 18 C 0.233 3.767 19 O -0.587 6.587 20 C -0.555 4.555 21 H 0.067 0.933 22 C 0.025 3.975 23 N -0.915 5.915 24 Si 0.962 3.038 25 H -0.264 1.264 26 H -0.285 1.285 27 H -0.278 1.278 28 C 0.146 3.854 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.134 0.866 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.148 0.852 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.412 0.588 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.375 0.625 49 H 0.269 0.731 50 H 0.029 0.971 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.592 11.916 11.695 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C -0.225 4.225 4 C 0.104 3.896 5 N -0.357 5.357 6 C -0.057 4.057 7 C -0.051 4.051 8 C -0.213 4.213 9 C -0.057 4.057 10 C -0.164 4.164 11 C -0.017 4.017 12 N -0.319 5.319 13 C 0.413 3.587 14 O -0.499 6.499 15 N -0.371 5.371 16 C -0.017 4.017 17 C -0.147 4.147 18 C 0.193 3.807 19 O -0.395 6.395 20 C -0.593 4.593 21 H 0.085 0.915 22 C -0.176 4.176 23 N -0.554 5.554 24 Si 0.787 3.213 25 H -0.188 1.188 26 H -0.211 1.211 27 H -0.203 1.203 28 C 0.022 3.978 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.151 0.849 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.166 0.834 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.085 0.915 43 H 0.251 0.749 44 H 0.091 0.909 45 H 0.117 0.883 46 H 0.101 0.899 47 H 0.109 0.891 48 H 0.224 0.776 49 H 0.078 0.922 50 H 0.048 0.952 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 18.736 12.567 11.508 25.326 hybrid contribution -1.630 -0.063 -1.116 1.976 sum 17.107 12.505 10.392 23.601 Atomic orbital electron populations 1.20719 0.91857 1.00799 1.01343 1.19676 0.95654 0.92343 0.96950 1.20492 0.92664 0.97355 1.12014 1.17879 0.90745 0.86845 0.94105 1.46530 1.06480 1.02897 1.79804 1.21803 0.97610 0.84592 1.01722 1.21743 0.78227 1.03703 1.01424 1.20533 1.00283 0.89414 1.11074 1.19790 0.90889 0.96915 0.98092 1.20744 1.00279 0.92584 1.02823 1.17147 0.90419 0.84250 1.09931 1.42248 1.33143 1.16945 1.39522 1.15612 0.80051 0.81322 0.81736 1.90880 1.72352 1.44311 1.42373 1.47881 1.33518 1.16710 1.38975 1.22472 0.98368 0.87597 0.93240 1.22743 0.95178 1.01362 0.95425 1.19720 0.90808 0.81981 0.88202 1.86093 1.76864 1.53053 1.23446 1.21848 0.92049 1.50170 0.95205 0.91473 1.25810 1.03290 0.93172 0.95315 1.69815 1.37417 1.48413 0.99782 0.85443 0.79876 0.77457 0.78483 1.18810 1.21094 1.20331 1.22316 0.84849 0.98961 0.91708 0.92228 0.94243 0.91214 0.84851 0.91002 0.90955 0.92475 0.93318 0.89836 0.90796 0.83422 0.91332 0.88839 0.91503 0.74940 0.90878 0.88301 0.89871 0.89082 0.77625 0.92178 0.95227 0.95523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.16 8.07 71.24 0.58 -2.59 16 2 C -0.04 -1.40 5.48 -19.76 -0.11 -1.51 16 3 C -0.20 -5.50 8.99 22.38 0.20 -5.30 16 4 C 0.21 4.85 6.54 38.16 0.25 5.10 16 5 N -0.64 -11.39 3.42 -747.09 -2.55 -13.94 16 6 C 0.09 1.18 10.63 127.77 1.36 2.54 16 7 C 0.09 1.04 10.10 127.77 1.29 2.33 16 8 C -0.19 -4.20 8.83 22.38 0.20 -4.00 16 9 C -0.05 -1.34 5.89 -19.76 -0.12 -1.46 16 10 C -0.11 -1.99 9.82 71.24 0.70 -1.29 16 11 C 0.08 2.40 5.97 38.09 0.23 2.63 16 12 N -0.67 -21.02 4.42 -317.02 -1.40 -22.42 16 13 C 0.71 29.23 6.57 179.05 1.18 30.41 16 14 O -0.62 -30.54 12.93 -4.00 -0.05 -30.60 16 15 N -0.63 -26.26 3.32 -829.30 -2.76 -29.02 16 16 C 0.11 3.42 6.55 86.93 0.57 3.99 16 17 C -0.11 -4.12 6.24 32.06 0.20 -3.92 16 18 C 0.23 11.31 0.85 -10.35 -0.01 11.30 16 19 O -0.59 -29.68 13.07 -148.98 -1.95 -31.63 16 20 C -0.55 -29.21 8.13 25.60 0.21 -29.00 16 21 H 0.07 3.44 7.78 -2.91 -0.02 3.42 16 22 C 0.02 1.33 5.28 84.65 0.45 1.77 16 23 N -0.92 -50.49 10.96 21.45 0.24 -50.26 16 24 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 28 C 0.15 7.35 5.23 86.73 0.45 7.80 16 29 H 0.06 2.45 6.74 -2.39 -0.02 2.43 16 30 H 0.04 1.49 5.95 -2.39 -0.01 1.47 16 31 H 0.07 2.02 8.13 -2.39 -0.02 2.00 16 32 H 0.13 3.18 5.73 -2.91 -0.02 3.16 16 33 H 0.07 1.10 5.31 -2.38 -0.01 1.08 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.08 0.62 8.07 -2.39 -0.02 0.60 16 38 H 0.07 0.75 6.45 -2.39 -0.02 0.73 16 39 H 0.15 2.40 6.30 -2.91 -0.02 2.38 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.21 8.12 -2.38 -0.02 1.19 16 42 H 0.07 1.16 6.59 -2.39 -0.02 1.15 16 43 H 0.41 10.21 6.14 -92.71 -0.57 9.64 16 44 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.10 2.39 7.34 -2.39 -0.02 2.37 16 46 H 0.08 3.02 8.05 -2.38 -0.02 3.00 16 47 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 48 H 0.37 19.91 7.45 -74.06 -0.55 19.36 16 49 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 50 H 0.03 1.66 7.82 -2.38 -0.02 1.64 16 51 H 0.03 1.50 7.92 -2.39 -0.02 1.48 16 Total: -1.00 -70.12 395.21 1.02 -69.10 By element: Atomic # 1 Polarization: 45.54 SS G_CDS: -0.15 Total: 45.38 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 7.62 Total: 18.82 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -6.47 Total: -115.64 kcal Atomic # 8 Polarization: -60.23 SS G_CDS: -2.00 Total: -62.23 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -70.12 1.02 -69.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364102410.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.546 kcal (2) G-P(sol) polarization free energy of solvation -70.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds