Wall clock time and date at job start Wed Apr 1 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38069 * 120.00370 * 2 1 4 4 C 1.38877 * 119.99712 * 179.97438 * 3 2 1 5 5 N 1.39922 * 120.00406 * 179.97438 * 4 3 2 6 6 C 1.46503 * 120.00045 * 354.63554 * 5 4 3 7 7 C 1.46493 * 119.99961 * 174.63569 * 5 4 3 8 8 C 1.38878 * 119.99105 * 0.25296 * 4 3 2 9 9 C 1.38068 * 119.99241 * 359.53599 * 8 4 3 10 10 C 1.50703 * 119.99836 * 180.18961 * 9 8 4 11 11 C 1.38835 * 120.00543 * 0.44329 * 9 8 4 12 12 N 1.40205 * 119.99481 * 179.77085 * 11 9 8 13 13 C 1.34776 * 119.99501 * 233.92326 * 12 11 9 14 14 O 1.21591 * 120.00621 * 4.20371 * 13 12 11 15 15 N 1.34777 * 119.99859 * 184.20601 * 13 12 11 16 16 C 1.47431 * 125.64681 * 0.02562 * 15 13 12 17 17 C 1.54913 * 104.83147 * 204.09563 * 16 15 13 18 18 C 1.55157 * 101.58002 * 322.99006 * 17 16 15 19 19 O 1.42902 * 110.72274 * 277.13759 * 18 17 16 20 20 C 1.50696 * 110.71930 * 154.04403 * 18 17 16 21 21 H 1.08001 * 120.00288 * 267.72536 * 20 18 17 22 22 C 1.37877 * 119.99993 * 87.71527 * 20 18 17 23 23 N 1.31520 * 120.00117 * 177.24907 * 22 20 18 24 24 Si 1.86798 * 120.00084 * 357.24942 * 22 20 18 25 25 H 1.48499 * 109.46982 * 89.67329 * 24 22 20 26 26 H 1.48504 * 109.47226 * 209.67459 * 24 22 20 27 27 H 1.48499 * 109.47071 * 329.67604 * 24 22 20 28 28 C 1.47020 * 125.65233 * 179.71882 * 15 13 12 29 29 H 1.08998 * 109.46887 * 83.04860 * 1 2 3 30 30 H 1.08993 * 109.47966 * 203.05487 * 1 2 3 31 31 H 1.09006 * 109.47035 * 323.05675 * 1 2 3 32 32 H 1.08007 * 119.99981 * 359.97293 * 3 2 1 33 33 H 1.08995 * 109.47036 * 90.00068 * 6 5 4 34 34 H 1.09000 * 109.47353 * 210.00144 * 6 5 4 35 35 H 1.09003 * 109.46863 * 330.00068 * 6 5 4 36 36 H 1.09001 * 109.47379 * 5.02483 * 7 5 4 37 37 H 1.09000 * 109.47394 * 125.02663 * 7 5 4 38 38 H 1.09007 * 109.46980 * 245.02204 * 7 5 4 39 39 H 1.07993 * 120.00053 * 179.74217 * 8 4 3 40 40 H 1.09001 * 109.46888 * 275.05204 * 10 9 8 41 41 H 1.08994 * 109.47167 * 35.04274 * 10 9 8 42 42 H 1.08996 * 109.47164 * 155.05055 * 10 9 8 43 43 H 0.96993 * 120.00058 * 53.91899 * 12 11 9 44 44 H 1.09001 * 110.36778 * 322.93707 * 16 15 13 45 45 H 1.09002 * 110.36253 * 85.25802 * 16 15 13 46 46 H 1.09001 * 111.00565 * 81.06643 * 17 16 15 47 47 H 1.09007 * 111.00101 * 204.88265 * 17 16 15 48 48 H 0.96690 * 114.00066 * 184.75067 * 19 18 17 49 49 H 0.96995 * 119.99989 * 180.02562 * 23 22 20 50 50 H 1.09003 * 109.88034 * 298.38917 * 28 15 13 51 51 H 1.08998 * 109.88324 * 59.55527 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1957 0.0000 4 6 3.5862 1.1955 0.0005 5 7 4.2860 2.4071 0.0000 6 6 3.5586 3.6732 -0.1198 7 6 5.7461 2.4097 0.1192 8 6 4.2802 -0.0074 -0.0042 9 6 3.5894 -1.2028 0.0002 10 6 4.3425 -2.5082 -0.0007 11 6 2.2011 -1.2024 0.0001 12 7 1.4998 -2.4165 -0.0003 13 6 0.5677 -2.6559 -0.9439 14 8 0.3884 -1.8528 -1.8390 15 7 -0.1658 -3.7855 -0.8951 16 6 -0.0534 -4.8394 0.1297 17 6 -0.5946 -6.1187 -0.5561 18 6 -1.7542 -5.5459 -1.4132 19 8 -2.9371 -5.3934 -0.6261 20 6 -2.0203 -6.4265 -2.6068 21 1 -1.5282 -6.2251 -3.5468 22 6 -2.8919 -7.4893 -2.4988 23 7 -3.1658 -8.2250 -3.5540 24 14 -3.6838 -7.8844 -0.8537 25 1 -4.9605 -7.1366 -0.7266 26 1 -3.9538 -9.3424 -0.7717 27 1 -2.7666 -7.4882 0.2450 28 6 -1.2149 -4.1680 -1.8515 29 1 -0.3633 0.1244 -1.0201 30 1 -0.3635 -0.9455 0.4024 31 1 -0.3633 0.8214 0.6177 32 1 1.6574 2.1311 -0.0004 33 1 3.2946 4.0359 0.8736 34 1 4.1891 4.4087 -0.6194 35 1 2.6508 3.5169 -0.7026 36 1 6.1134 1.3835 0.1077 37 1 6.1779 2.9596 -0.7170 38 1 6.0333 2.8880 1.0556 39 1 5.3602 -0.0077 -0.0080 40 1 4.5986 -2.7792 -1.0249 41 1 5.2550 -2.4016 0.5858 42 1 3.7186 -3.2879 0.4363 43 1 1.6856 -3.0841 0.6784 44 1 0.9881 -4.9764 0.4204 45 1 -0.6611 -4.5892 0.9993 46 1 0.1679 -6.5765 -1.1863 47 1 -0.9673 -6.8296 0.1815 48 1 -3.7110 -5.1075 -1.1304 49 1 -3.7793 -8.9725 -3.4780 50 1 -2.0179 -3.4311 -1.8351 51 1 -0.7942 -4.2387 -2.8546 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364102416.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:30 Heat of formation + Delta-G solvation = -22.996303 kcal Electronic energy + Delta-G solvation = -31454.648453 eV Core-core repulsion = 27354.804479 eV Total energy + Delta-G solvation = -4099.843975 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.71229 -39.41523 -37.96872 -36.61856 -34.78285 -33.88451 -33.51101 -32.38096 -30.57762 -29.72011 -29.06079 -28.37204 -27.03366 -26.12672 -25.40404 -24.36952 -22.64346 -20.89403 -20.60649 -19.77057 -19.47942 -18.19169 -17.53852 -17.25431 -16.45278 -16.37383 -15.32946 -15.28945 -15.21280 -14.80861 -14.63607 -14.29809 -14.02751 -13.70284 -13.51668 -13.46345 -13.37103 -13.08465 -12.88777 -12.83386 -12.73284 -12.46469 -12.35224 -12.13444 -12.06313 -11.84849 -11.74990 -11.66900 -11.56445 -11.45754 -11.05830 -10.94455 -10.60304 -10.34138 -10.14127 -10.05577 -9.69642 -9.20589 -9.03357 -8.67070 -8.55340 -8.54327 -8.07847 -7.16352 -6.22760 -4.35450 1.39535 1.52868 2.89720 2.98030 3.38235 3.48187 3.50092 3.64811 3.82012 4.23631 4.42071 4.63533 4.69130 4.83110 4.99688 5.01561 5.04854 5.11921 5.13405 5.25967 5.30312 5.32196 5.33437 5.44481 5.45599 5.52246 5.57327 5.60892 5.68247 5.75794 5.79662 5.86974 5.89579 5.98611 6.11134 6.13583 6.22440 6.38985 6.54018 6.56078 6.61715 6.65568 6.72945 6.76853 7.01380 7.08229 7.08683 7.30993 7.40964 7.44267 8.07806 8.27493 8.63248 8.79409 8.93537 9.36480 10.86448 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.002353 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.458505 B =11895.012220 C =12261.833662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.020 4.020 3 C -0.190 4.190 4 C 0.210 3.790 5 N -0.642 5.642 6 C 0.096 3.904 7 C 0.092 3.908 8 C -0.194 4.194 9 C -0.049 4.049 10 C -0.109 4.109 11 C 0.109 3.891 12 N -0.690 5.690 13 C 0.718 3.282 14 O -0.580 6.580 15 N -0.627 5.627 16 C 0.098 3.902 17 C -0.119 4.119 18 C 0.219 3.781 19 O -0.565 6.565 20 C -0.552 4.552 21 H 0.082 0.918 22 C 0.072 3.928 23 N -0.886 5.886 24 Si 0.939 3.061 25 H -0.291 1.291 26 H -0.323 1.323 27 H -0.262 1.262 28 C 0.114 3.886 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.122 0.878 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.124 0.876 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.399 0.601 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.373 0.627 49 H 0.267 0.733 50 H 0.057 0.943 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.430 18.160 11.487 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.023 4.023 3 C -0.213 4.213 4 C 0.109 3.891 5 N -0.355 5.355 6 C -0.047 4.047 7 C -0.051 4.051 8 C -0.216 4.216 9 C -0.052 4.052 10 C -0.166 4.166 11 C 0.014 3.986 12 N -0.341 5.341 13 C 0.421 3.579 14 O -0.458 6.458 15 N -0.364 5.364 16 C -0.025 4.025 17 C -0.157 4.157 18 C 0.178 3.822 19 O -0.373 6.373 20 C -0.590 4.590 21 H 0.100 0.900 22 C -0.133 4.133 23 N -0.521 5.521 24 Si 0.773 3.227 25 H -0.219 1.219 26 H -0.254 1.254 27 H -0.187 1.187 28 C -0.008 4.008 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.142 0.858 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.235 0.765 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.103 0.897 47 H 0.100 0.900 48 H 0.221 0.779 49 H 0.077 0.923 50 H 0.076 0.924 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.697 18.620 11.182 26.798 hybrid contribution -0.662 -0.387 0.562 0.951 sum 15.035 18.233 11.744 26.390 Atomic orbital electron populations 1.20800 0.90853 1.01614 1.02995 1.19613 0.96096 0.91294 0.95314 1.20321 0.91723 0.97627 1.11606 1.17722 0.91000 0.85462 0.94871 1.46254 1.05244 1.03224 1.80807 1.21564 0.97280 0.85027 1.00822 1.21647 0.79980 1.02963 1.00513 1.20292 0.99110 0.90071 1.12167 1.19566 0.91989 0.95173 0.98452 1.20688 0.99399 0.93962 1.02571 1.16801 0.89221 0.84551 1.08019 1.42487 1.41036 1.18255 1.32345 1.15405 0.79086 0.81342 0.82053 1.90906 1.71198 1.47005 1.36678 1.47689 1.39032 1.19358 1.30346 1.22372 0.99550 0.88934 0.91610 1.23083 0.98223 0.95138 0.99287 1.20090 0.82501 0.90016 0.89564 1.86214 1.21109 1.88515 1.41452 1.21212 1.28763 1.12437 0.96544 0.90035 1.25143 0.95480 0.94954 0.97691 1.69951 1.34210 1.18233 1.29747 0.85901 0.79378 0.73813 0.83607 1.21879 1.25392 1.18726 1.22693 0.88519 0.97500 0.92119 0.89677 0.92159 0.92540 0.86003 0.93657 0.91824 0.91320 0.90422 0.92901 0.93299 0.85799 0.90924 0.91554 0.91838 0.76503 0.92357 0.91815 0.89693 0.89964 0.77887 0.92334 0.92423 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 8.27 36.00 0.30 -1.24 16 2 C -0.02 -0.29 5.49 -104.46 -0.57 -0.87 16 3 C -0.19 -2.40 8.84 -39.41 -0.35 -2.75 16 4 C 0.21 2.46 6.54 -83.69 -0.55 1.91 16 5 N -0.64 -5.99 3.42 -187.49 -0.64 -6.63 16 6 C 0.10 0.70 10.11 59.85 0.60 1.30 16 7 C 0.09 0.62 10.63 59.84 0.64 1.26 16 8 C -0.19 -2.21 8.98 -39.41 -0.35 -2.57 16 9 C -0.05 -0.61 5.89 -104.46 -0.62 -1.23 16 10 C -0.11 -1.10 9.82 36.01 0.35 -0.74 16 11 C 0.11 1.58 5.80 -83.58 -0.49 1.09 16 12 N -0.69 -10.05 4.11 -14.17 -0.06 -10.11 16 13 C 0.72 13.03 6.67 -86.92 -0.58 12.45 16 14 O -0.58 -12.41 13.97 5.29 0.07 -12.33 16 15 N -0.63 -11.39 3.33 -176.22 -0.59 -11.97 16 16 C 0.10 1.56 6.60 -2.52 -0.02 1.55 16 17 C -0.12 -2.27 5.89 -24.58 -0.14 -2.41 16 18 C 0.22 4.71 0.70 -89.93 -0.06 4.65 16 19 O -0.56 -11.85 8.86 -35.23 -0.31 -12.16 16 20 C -0.55 -14.33 8.76 -34.44 -0.30 -14.63 16 21 H 0.08 2.34 7.80 -52.49 -0.41 1.93 16 22 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 23 N -0.89 -25.80 13.96 55.43 0.77 -25.03 16 24 Si 0.94 22.13 24.70 -169.99 -4.20 17.93 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.32 -7.90 7.11 56.52 0.40 -7.50 16 27 H -0.26 -5.95 5.01 56.52 0.28 -5.67 16 28 C 0.11 2.35 6.23 -3.06 -0.02 2.33 16 29 H 0.08 1.40 7.13 -51.93 -0.37 1.03 16 30 H 0.06 0.94 6.28 -51.93 -0.33 0.62 16 31 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 32 H 0.12 1.34 6.29 -52.48 -0.33 1.01 16 33 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.35 8.07 -51.93 -0.42 -0.07 16 35 H 0.07 0.52 6.44 -51.93 -0.33 0.18 16 36 H 0.08 0.50 5.31 -51.93 -0.28 0.22 16 37 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.12 1.13 5.73 -52.49 -0.30 0.83 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 42 H 0.06 0.61 6.75 -51.93 -0.35 0.26 16 43 H 0.40 4.83 6.39 -40.82 -0.26 4.57 16 44 H 0.06 0.74 7.24 -51.93 -0.38 0.37 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.08 1.63 8.04 -51.93 -0.42 1.21 16 47 H 0.08 1.58 6.38 -51.93 -0.33 1.25 16 48 H 0.37 7.17 8.39 45.56 0.38 7.55 16 49 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 50 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 51 H 0.07 1.59 7.65 -51.93 -0.40 1.19 16 LS Contribution 389.51 15.07 5.87 5.87 Total: -1.00 -32.73 389.51 -8.48 -41.21 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -7.15 Total: 11.25 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.25 Total: 1.96 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.51 Total: -53.74 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.24 Total: -24.49 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.20 Total: 17.93 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.73 -8.48 -41.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364102416.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.214 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds