Wall clock time and date at job start Wed Apr 1 2020 05:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38069 * 120.00370 * 2 1 4 4 C 1.38877 * 119.99712 * 179.97438 * 3 2 1 5 5 N 1.39922 * 120.00406 * 179.97438 * 4 3 2 6 6 C 1.46503 * 120.00045 * 354.63554 * 5 4 3 7 7 C 1.46493 * 119.99961 * 174.63569 * 5 4 3 8 8 C 1.38878 * 119.99105 * 0.25296 * 4 3 2 9 9 C 1.38068 * 119.99241 * 359.53599 * 8 4 3 10 10 C 1.50703 * 119.99836 * 180.18961 * 9 8 4 11 11 C 1.38835 * 120.00543 * 0.44329 * 9 8 4 12 12 N 1.40205 * 119.99481 * 179.77085 * 11 9 8 13 13 C 1.34776 * 119.99501 * 233.92326 * 12 11 9 14 14 O 1.21591 * 120.00621 * 4.20371 * 13 12 11 15 15 N 1.34777 * 119.99859 * 184.20601 * 13 12 11 16 16 C 1.47431 * 125.64681 * 0.02562 * 15 13 12 17 17 C 1.54913 * 104.83147 * 204.09563 * 16 15 13 18 18 C 1.55157 * 101.58002 * 322.99006 * 17 16 15 19 19 O 1.42902 * 110.72274 * 277.13759 * 18 17 16 20 20 C 1.50696 * 110.71930 * 154.04403 * 18 17 16 21 21 H 1.08001 * 120.00288 * 267.72536 * 20 18 17 22 22 C 1.37877 * 119.99993 * 87.71527 * 20 18 17 23 23 N 1.31520 * 120.00117 * 177.24907 * 22 20 18 24 24 Si 1.86798 * 120.00084 * 357.24942 * 22 20 18 25 25 H 1.48499 * 109.46982 * 89.67329 * 24 22 20 26 26 H 1.48504 * 109.47226 * 209.67459 * 24 22 20 27 27 H 1.48499 * 109.47071 * 329.67604 * 24 22 20 28 28 C 1.47020 * 125.65233 * 179.71882 * 15 13 12 29 29 H 1.08998 * 109.46887 * 83.04860 * 1 2 3 30 30 H 1.08993 * 109.47966 * 203.05487 * 1 2 3 31 31 H 1.09006 * 109.47035 * 323.05675 * 1 2 3 32 32 H 1.08007 * 119.99981 * 359.97293 * 3 2 1 33 33 H 1.08995 * 109.47036 * 90.00068 * 6 5 4 34 34 H 1.09000 * 109.47353 * 210.00144 * 6 5 4 35 35 H 1.09003 * 109.46863 * 330.00068 * 6 5 4 36 36 H 1.09001 * 109.47379 * 5.02483 * 7 5 4 37 37 H 1.09000 * 109.47394 * 125.02663 * 7 5 4 38 38 H 1.09007 * 109.46980 * 245.02204 * 7 5 4 39 39 H 1.07993 * 120.00053 * 179.74217 * 8 4 3 40 40 H 1.09001 * 109.46888 * 275.05204 * 10 9 8 41 41 H 1.08994 * 109.47167 * 35.04274 * 10 9 8 42 42 H 1.08996 * 109.47164 * 155.05055 * 10 9 8 43 43 H 0.96993 * 120.00058 * 53.91899 * 12 11 9 44 44 H 1.09001 * 110.36778 * 322.93707 * 16 15 13 45 45 H 1.09002 * 110.36253 * 85.25802 * 16 15 13 46 46 H 1.09001 * 111.00565 * 81.06643 * 17 16 15 47 47 H 1.09007 * 111.00101 * 204.88265 * 17 16 15 48 48 H 0.96690 * 114.00066 * 184.75067 * 19 18 17 49 49 H 0.96995 * 119.99989 * 180.02562 * 23 22 20 50 50 H 1.09003 * 109.88034 * 298.38917 * 28 15 13 51 51 H 1.08998 * 109.88324 * 59.55527 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1957 0.0000 4 6 3.5862 1.1955 0.0005 5 7 4.2860 2.4071 0.0000 6 6 3.5586 3.6732 -0.1198 7 6 5.7461 2.4097 0.1192 8 6 4.2802 -0.0074 -0.0042 9 6 3.5894 -1.2028 0.0002 10 6 4.3425 -2.5082 -0.0007 11 6 2.2011 -1.2024 0.0001 12 7 1.4998 -2.4165 -0.0003 13 6 0.5677 -2.6559 -0.9439 14 8 0.3884 -1.8528 -1.8390 15 7 -0.1658 -3.7855 -0.8951 16 6 -0.0534 -4.8394 0.1297 17 6 -0.5946 -6.1187 -0.5561 18 6 -1.7542 -5.5459 -1.4132 19 8 -2.9371 -5.3934 -0.6261 20 6 -2.0203 -6.4265 -2.6068 21 1 -1.5282 -6.2251 -3.5468 22 6 -2.8919 -7.4893 -2.4988 23 7 -3.1658 -8.2250 -3.5540 24 14 -3.6838 -7.8844 -0.8537 25 1 -4.9605 -7.1366 -0.7266 26 1 -3.9538 -9.3424 -0.7717 27 1 -2.7666 -7.4882 0.2450 28 6 -1.2149 -4.1680 -1.8515 29 1 -0.3633 0.1244 -1.0201 30 1 -0.3635 -0.9455 0.4024 31 1 -0.3633 0.8214 0.6177 32 1 1.6574 2.1311 -0.0004 33 1 3.2946 4.0359 0.8736 34 1 4.1891 4.4087 -0.6194 35 1 2.6508 3.5169 -0.7026 36 1 6.1134 1.3835 0.1077 37 1 6.1779 2.9596 -0.7170 38 1 6.0333 2.8880 1.0556 39 1 5.3602 -0.0077 -0.0080 40 1 4.5986 -2.7792 -1.0249 41 1 5.2550 -2.4016 0.5858 42 1 3.7186 -3.2879 0.4363 43 1 1.6856 -3.0841 0.6784 44 1 0.9881 -4.9764 0.4204 45 1 -0.6611 -4.5892 0.9993 46 1 0.1679 -6.5765 -1.1863 47 1 -0.9673 -6.8296 0.1815 48 1 -3.7110 -5.1075 -1.1304 49 1 -3.7793 -8.9725 -3.4780 50 1 -2.0179 -3.4311 -1.8351 51 1 -0.7942 -4.2387 -2.8546 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364102416.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:29 Heat of formation + Delta-G solvation = -45.547227 kcal Electronic energy + Delta-G solvation = -31455.626335 eV Core-core repulsion = 27354.804479 eV Total energy + Delta-G solvation = -4100.821856 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.90585 -40.60644 -39.37578 -37.61560 -36.36754 -35.00621 -34.47581 -34.44186 -31.95518 -30.84449 -29.96207 -29.69127 -28.14031 -26.98427 -26.94957 -25.38800 -24.08696 -22.00768 -21.66749 -21.30213 -20.66558 -19.73790 -19.16928 -18.30098 -17.50190 -17.36864 -17.13149 -16.47657 -16.46900 -16.17184 -15.90490 -15.37051 -15.14682 -14.92191 -14.75463 -14.67861 -14.53939 -14.16259 -14.09126 -14.05808 -13.86765 -13.82092 -13.32409 -13.24675 -13.23294 -12.99418 -12.79272 -12.71874 -12.67137 -12.57461 -12.47985 -12.34459 -12.23789 -11.86841 -11.81436 -11.33093 -11.18285 -10.95956 -10.67986 -10.33821 -10.08679 -9.50425 -9.48194 -8.33921 -8.01731 -6.49797 0.46338 0.54114 1.50586 1.55866 1.60786 1.78214 2.12810 2.27255 2.43685 2.84785 2.97773 3.00801 3.48787 3.81945 3.83443 3.88554 4.05767 4.11865 4.29322 4.32068 4.39839 4.46128 4.47302 4.48577 4.56517 4.57796 4.61232 4.69617 4.75561 4.79069 4.82655 4.84957 4.87825 4.92543 4.97840 5.02174 5.09623 5.14349 5.20677 5.22103 5.32126 5.36216 5.44521 5.51527 5.66357 5.69194 6.01083 6.02427 6.08931 6.39071 6.57390 6.58400 6.91596 6.96825 7.27176 7.57306 8.79538 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.002353 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.458505 B =11895.012220 C =12261.833662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.040 4.040 3 C -0.202 4.202 4 C 0.210 3.790 5 N -0.644 5.644 6 C 0.090 3.910 7 C 0.086 3.914 8 C -0.197 4.197 9 C -0.050 4.050 10 C -0.109 4.109 11 C 0.075 3.925 12 N -0.670 5.670 13 C 0.717 3.283 14 O -0.619 6.619 15 N -0.630 5.630 16 C 0.106 3.894 17 C -0.118 4.118 18 C 0.220 3.780 19 O -0.560 6.560 20 C -0.550 4.550 21 H 0.037 0.963 22 C 0.023 3.977 23 N -0.937 5.937 24 Si 1.002 2.998 25 H -0.281 1.281 26 H -0.335 1.335 27 H -0.242 1.242 28 C 0.124 3.876 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.149 0.851 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.412 0.588 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.380 0.620 49 H 0.268 0.732 50 H 0.055 0.945 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.578 19.547 14.615 30.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.043 4.043 3 C -0.225 4.225 4 C 0.107 3.893 5 N -0.357 5.357 6 C -0.052 4.052 7 C -0.056 4.056 8 C -0.220 4.220 9 C -0.052 4.052 10 C -0.165 4.165 11 C -0.019 4.019 12 N -0.322 5.322 13 C 0.420 3.580 14 O -0.499 6.499 15 N -0.367 5.367 16 C -0.016 4.016 17 C -0.156 4.156 18 C 0.179 3.821 19 O -0.369 6.369 20 C -0.588 4.588 21 H 0.055 0.945 22 C -0.177 4.177 23 N -0.575 5.575 24 Si 0.834 3.166 25 H -0.208 1.208 26 H -0.267 1.267 27 H -0.166 1.166 28 C 0.000 4.000 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.150 0.850 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.167 0.833 40 H 0.085 0.915 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.250 0.750 44 H 0.116 0.884 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.107 0.893 48 H 0.230 0.770 49 H 0.077 0.923 50 H 0.073 0.927 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 17.899 20.053 14.356 30.472 hybrid contribution -1.208 -0.651 -0.505 1.462 sum 16.691 19.401 13.851 29.100 Atomic orbital electron populations 1.20654 0.91553 1.01572 1.01556 1.19741 0.95897 0.92254 0.96385 1.20449 0.92506 0.97467 1.12061 1.17909 0.90906 0.86728 0.93728 1.46553 1.06412 1.02963 1.79729 1.21710 0.97391 0.84649 1.01474 1.21842 0.78360 1.03660 1.01775 1.20605 1.00379 0.89574 1.11423 1.19846 0.91314 0.96696 0.97368 1.20746 1.00293 0.92783 1.02720 1.17062 0.90195 0.84211 1.10457 1.42201 1.39771 1.18734 1.31452 1.15519 0.79455 0.80750 0.82227 1.90881 1.72355 1.48234 1.38455 1.47595 1.38577 1.20108 1.30374 1.22466 1.02216 0.86180 0.90739 1.22996 0.96873 0.96719 0.99027 1.19938 0.83623 0.89731 0.88809 1.86178 1.21180 1.88415 1.41086 1.21390 1.27771 1.12987 0.96680 0.94463 1.25955 0.96102 0.94754 1.00914 1.70084 1.35849 1.19411 1.32158 0.84873 0.79072 0.72835 0.79840 1.20787 1.26671 1.16636 1.22322 0.89136 0.97056 0.91496 0.92378 0.93636 0.90475 0.85008 0.92820 0.89870 0.92035 0.90030 0.91638 0.91939 0.83350 0.91476 0.89025 0.91419 0.74968 0.88382 0.90285 0.90319 0.89342 0.77037 0.92307 0.92691 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.84 8.27 71.24 0.59 -2.25 16 2 C -0.04 -1.15 5.49 -19.76 -0.11 -1.25 16 3 C -0.20 -4.93 8.84 22.38 0.20 -4.73 16 4 C 0.21 4.52 6.54 38.16 0.25 4.77 16 5 N -0.64 -10.36 3.42 -747.09 -2.55 -12.91 16 6 C 0.09 1.10 10.11 127.77 1.29 2.40 16 7 C 0.09 0.88 10.63 127.77 1.36 2.23 16 8 C -0.20 -4.03 8.98 22.38 0.20 -3.83 16 9 C -0.05 -1.14 5.89 -19.76 -0.12 -1.25 16 10 C -0.11 -1.89 9.82 71.24 0.70 -1.19 16 11 C 0.08 2.11 5.80 38.09 0.22 2.33 16 12 N -0.67 -18.67 4.11 -317.01 -1.30 -19.97 16 13 C 0.72 25.87 6.67 179.05 1.19 27.07 16 14 O -0.62 -27.19 13.97 -4.00 -0.06 -27.24 16 15 N -0.63 -22.39 3.33 -829.71 -2.76 -25.15 16 16 C 0.11 3.06 6.60 86.86 0.57 3.64 16 17 C -0.12 -4.28 5.89 31.99 0.19 -4.09 16 18 C 0.22 9.40 0.70 -10.35 -0.01 9.40 16 19 O -0.56 -22.47 8.86 -148.98 -1.32 -23.79 16 20 C -0.55 -29.46 8.76 25.60 0.22 -29.23 16 21 H 0.04 2.27 7.80 -2.91 -0.02 2.25 16 22 C 0.02 1.24 5.47 84.65 0.46 1.70 16 23 N -0.94 -56.40 13.96 21.45 0.30 -56.10 16 24 Si 1.00 45.25 24.70 68.60 1.69 46.94 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.33 -15.74 7.11 99.48 0.71 -15.04 16 27 H -0.24 -10.06 5.01 99.48 0.50 -9.56 16 28 C 0.12 5.18 6.23 86.73 0.54 5.72 16 29 H 0.06 2.00 7.13 -2.39 -0.02 1.99 16 30 H 0.04 1.43 6.28 -2.39 -0.02 1.41 16 31 H 0.08 1.83 8.13 -2.38 -0.02 1.81 16 32 H 0.13 2.79 6.29 -2.91 -0.02 2.78 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.69 8.07 -2.39 -0.02 0.67 16 35 H 0.06 0.84 6.44 -2.39 -0.02 0.83 16 36 H 0.08 0.76 5.31 -2.39 -0.01 0.75 16 37 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 39 H 0.15 2.20 5.73 -2.91 -0.02 2.19 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 1.12 8.12 -2.39 -0.02 1.10 16 42 H 0.07 1.10 6.75 -2.39 -0.02 1.09 16 43 H 0.41 8.94 6.39 -92.71 -0.59 8.35 16 44 H 0.10 2.10 7.24 -2.39 -0.02 2.08 16 45 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.08 2.94 8.04 -2.39 -0.02 2.92 16 47 H 0.09 3.12 6.38 -2.38 -0.02 3.11 16 48 H 0.38 14.11 8.39 -74.06 -0.62 13.49 16 49 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 50 H 0.05 2.29 8.07 -2.39 -0.02 2.27 16 51 H 0.04 2.01 7.65 -2.39 -0.02 1.99 16 Total: -1.00 -73.82 389.51 1.31 -72.50 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: -0.45 Total: 34.32 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 7.76 Total: 11.41 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -6.31 Total: -114.15 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -1.38 Total: -51.03 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.69 Total: 46.94 kcal Total: -73.82 1.31 -72.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364102416.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.957 kcal (2) G-P(sol) polarization free energy of solvation -73.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds