Wall clock time and date at job start Wed Apr 1 2020 05:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35975 * 117.00079 * 2 1 4 4 C 1.38738 * 119.98147 * 0.02562 * 3 2 1 5 5 C 1.38076 * 120.01252 * 180.02562 * 4 3 2 6 6 C 1.50697 * 120.00678 * 180.02562 * 5 4 3 7 7 C 1.38859 * 119.98572 * 0.02562 * 5 4 3 8 8 N 1.40154 * 120.01195 * 180.02562 * 7 5 4 9 9 C 1.34775 * 119.99839 * 308.35529 * 8 7 5 10 10 O 1.21590 * 120.00080 * 355.28474 * 9 8 7 11 11 N 1.34781 * 119.99548 * 175.27928 * 9 8 7 12 12 C 1.46963 * 120.58996 * 184.99351 * 11 9 8 13 13 C 1.53373 * 108.63578 * 235.25186 * 12 11 9 14 14 N 1.46966 * 108.63323 * 310.57725 * 13 12 11 15 15 C 1.36929 * 120.59763 * 235.20182 * 14 13 12 16 16 H 1.08003 * 120.00665 * 149.91398 * 15 14 13 17 17 C 1.38816 * 119.99899 * 329.64114 * 15 14 13 18 18 N 1.31621 * 119.99964 * 351.13458 * 17 15 14 19 19 Si 1.86796 * 120.00323 * 171.13785 * 17 15 14 20 20 H 1.48506 * 109.47209 * 59.99856 * 19 17 15 21 21 H 1.48496 * 109.47520 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46923 * 300.00127 * 19 17 15 23 23 C 1.46968 * 118.81147 * 55.47977 * 14 13 12 24 24 C 1.46966 * 120.59651 * 5.01919 * 11 9 8 25 25 C 1.38810 * 119.97384 * 0.27629 * 7 5 4 26 26 C 1.50695 * 120.01242 * 179.70361 * 25 7 5 27 27 C 1.38122 * 119.98053 * 359.44563 * 25 7 5 28 28 C 1.50699 * 119.99107 * 180.27654 * 27 25 7 29 29 H 1.08997 * 109.47736 * 60.00107 * 1 2 3 30 30 H 1.09009 * 109.47010 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47029 * 299.99537 * 1 2 3 32 32 H 1.08003 * 119.99733 * 0.04341 * 4 3 2 33 33 H 1.08994 * 109.47446 * 277.95728 * 6 5 4 34 34 H 1.09010 * 109.47274 * 37.96020 * 6 5 4 35 35 H 1.09002 * 109.47228 * 157.95800 * 6 5 4 36 36 H 0.97000 * 120.00014 * 128.36071 * 8 7 5 37 37 H 1.08994 * 109.61237 * 115.50786 * 12 11 9 38 38 H 1.09001 * 109.61435 * 354.99181 * 12 11 9 39 39 H 1.09000 * 109.61248 * 190.83413 * 13 12 11 40 40 H 1.09002 * 109.75238 * 70.40588 * 13 12 11 41 41 H 0.96993 * 120.00191 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.61448 * 64.26527 * 23 14 13 43 43 H 1.08997 * 109.60945 * 184.77758 * 23 14 13 44 44 H 1.08994 * 109.60472 * 244.49324 * 24 11 9 45 45 H 1.08999 * 109.60502 * 4.83613 * 24 11 9 46 46 H 1.08999 * 109.47029 * 89.99407 * 26 25 7 47 47 H 1.08998 * 109.47488 * 210.00353 * 26 25 7 48 48 H 1.09000 * 109.46915 * 330.00185 * 26 25 7 49 49 H 1.09007 * 109.47030 * 270.27418 * 28 27 25 50 50 H 1.08997 * 109.47571 * 30.27718 * 28 27 25 51 51 H 1.09002 * 109.47309 * 150.28372 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2903 2.3749 0.0005 5 6 1.9165 3.6055 0.0000 6 6 1.0952 4.8690 0.0012 7 6 3.3032 3.6785 -0.0016 8 7 3.9394 4.9273 -0.0016 9 6 3.5988 5.8571 -0.9159 10 8 2.8024 5.5840 -1.7932 11 7 4.1409 7.0897 -0.8577 12 6 3.6987 8.1455 -1.7794 13 6 4.9243 8.6939 -2.5207 14 7 5.9686 9.0060 -1.5348 15 6 6.5201 10.2579 -1.4763 16 1 6.8838 10.6445 -0.5357 17 6 6.6169 11.0282 -2.6271 18 7 6.3429 10.4968 -3.7997 19 14 7.1361 12.8188 -2.5117 20 1 8.4904 12.9037 -1.9082 21 1 7.1623 13.4153 -3.8713 22 1 6.1689 13.5609 -1.6636 23 6 6.4148 7.9485 -0.6169 24 6 5.1852 7.4018 0.1282 25 6 4.0590 2.5142 -0.0085 26 6 5.5639 2.5925 -0.0170 27 6 3.4313 1.2839 -0.0021 28 6 4.2517 0.0197 -0.0033 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2118 2.3179 0.0017 33 1 0.7767 5.0963 -1.0161 34 1 0.2185 4.7319 0.6344 35 1 1.6963 5.6927 0.3863 36 1 4.6248 5.1225 0.6564 37 1 3.2231 8.9478 -1.2154 38 1 2.9917 7.7313 -2.4981 39 1 4.6497 9.5994 -3.0618 40 1 5.2952 7.9468 -3.2224 41 1 6.4102 11.0350 -4.6038 42 1 6.8883 7.1473 -1.1843 43 1 7.1247 8.3617 0.0996 44 1 4.8153 8.1511 0.8279 45 1 5.4577 6.4968 0.6712 46 1 5.9326 2.6093 1.0086 47 1 5.9700 1.7238 -0.5351 48 1 5.8775 3.5013 -0.5307 49 1 4.4482 -0.2849 -1.0313 50 1 5.1966 0.1993 0.5094 51 1 3.7035 -0.7697 0.5110 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466482856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:31 Heat of formation + Delta-G solvation = -1.880748 kcal Electronic energy + Delta-G solvation = -31715.113513 eV Core-core repulsion = 27616.185177 eV Total energy + Delta-G solvation = -4098.928335 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.99070 -39.81555 -38.06857 -36.75356 -34.56539 -34.28885 -33.67066 -31.22583 -30.76809 -29.88787 -29.23794 -27.64394 -27.20627 -26.49786 -24.61723 -23.75082 -22.89481 -21.77784 -20.89419 -20.16855 -19.17820 -18.28107 -17.39741 -16.82026 -16.75176 -16.36853 -15.93505 -15.16804 -14.88451 -14.75207 -14.24912 -14.21933 -13.89468 -13.77861 -13.57876 -13.52397 -13.25992 -13.21977 -13.04660 -12.88570 -12.85765 -12.58031 -12.19625 -12.00072 -11.92469 -11.87789 -11.76622 -11.50832 -11.12121 -10.91665 -10.86514 -10.76229 -10.68814 -10.62421 -10.20237 -10.01446 -9.89846 -9.68769 -9.50560 -8.59181 -8.50020 -8.25120 -7.69038 -6.68267 -5.83479 -3.35179 1.24127 1.35712 2.91659 3.14681 3.33740 3.39719 3.40321 3.42692 3.69720 4.12180 4.42279 4.66507 4.67641 4.89387 4.94600 4.95101 5.10120 5.14594 5.21283 5.24958 5.33802 5.41345 5.49862 5.51415 5.60192 5.67258 5.68512 5.72660 5.73714 5.78968 5.80114 5.89548 5.91201 6.08163 6.23519 6.28647 6.30899 6.34848 6.39921 6.49984 6.55481 6.57612 6.68764 6.82472 6.95230 7.24114 7.31772 7.33282 7.65089 7.70995 8.21803 8.38681 8.90460 9.13070 9.73523 10.30823 11.22329 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024988 B = 0.002393 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.270722 B =11698.084851 C =12273.945018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.119 3.881 4 C -0.198 4.198 5 C -0.036 4.036 6 C -0.103 4.103 7 C 0.135 3.865 8 N -0.692 5.692 9 C 0.703 3.297 10 O -0.583 6.583 11 N -0.612 5.612 12 C 0.105 3.895 13 C 0.155 3.845 14 N -0.591 5.591 15 C -0.256 4.256 16 H 0.066 0.934 17 C 0.004 3.996 18 N -0.905 5.905 19 Si 0.908 3.092 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.132 3.868 24 C 0.094 3.906 25 C -0.062 4.062 26 C -0.115 4.115 27 C -0.113 4.113 28 C -0.101 4.101 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.128 0.872 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.401 0.599 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.022 0.978 41 H 0.257 0.743 42 H 0.023 0.977 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.066 0.934 50 H 0.065 0.935 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.331 -18.779 11.149 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.074 3.926 4 C -0.218 4.218 5 C -0.038 4.038 6 C -0.160 4.160 7 C 0.041 3.959 8 N -0.345 5.345 9 C 0.406 3.594 10 O -0.460 6.460 11 N -0.348 5.348 12 C -0.019 4.019 13 C 0.029 3.971 14 N -0.314 5.314 15 C -0.385 4.385 16 H 0.084 0.916 17 C -0.195 4.195 18 N -0.549 5.549 19 Si 0.738 3.262 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.004 3.996 24 C -0.031 4.031 25 C -0.064 4.064 26 C -0.171 4.171 27 C -0.114 4.114 28 C -0.158 4.158 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.146 0.854 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.240 0.760 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.125 0.875 40 H 0.040 0.960 41 H 0.067 0.933 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.085 0.915 50 H 0.084 0.916 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.790 -18.965 10.315 23.310 hybrid contribution 0.368 1.216 0.298 1.305 sum -8.422 -17.749 10.613 22.329 Atomic orbital electron populations 1.23019 0.78742 1.03595 1.01380 1.86040 1.21013 1.26881 1.89057 1.18668 0.91579 0.83963 0.98366 1.20862 0.99711 0.91220 1.09959 1.19609 0.92500 0.95070 0.96631 1.20814 0.98043 0.94120 1.03005 1.16922 0.90351 0.83798 1.04869 1.42729 1.43664 1.12779 1.35310 1.15827 0.81363 0.80523 0.81733 1.90888 1.38801 1.79423 1.36927 1.47289 1.40351 1.09424 1.37767 1.22445 0.99666 0.87586 0.92217 1.21320 0.85415 1.00307 0.90052 1.43958 1.41388 1.07461 1.38571 1.19154 1.35628 0.90744 0.93001 0.91603 1.25193 0.99951 0.99213 0.95141 1.69912 1.52422 1.35353 0.97203 0.86286 0.78667 0.84525 0.76720 1.20860 1.21553 1.20921 1.21350 0.92648 0.92128 0.93458 1.22351 0.90545 0.99043 0.91172 1.19475 0.96066 0.90681 1.00212 1.20768 0.90543 1.03517 1.02320 1.18782 0.90396 0.95049 1.07202 1.20587 0.98798 0.94249 1.02170 0.92686 0.88476 0.92806 0.85434 0.89488 0.92696 0.92080 0.75992 0.92417 0.90064 0.87471 0.95988 0.93322 0.95899 0.91553 0.91529 0.92173 0.90969 0.90877 0.91093 0.91541 0.91562 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.48 9.53 -19.66 -0.19 -3.67 16 3 C 0.12 1.49 6.66 -39.23 -0.26 1.23 16 4 C -0.20 -2.49 8.71 -39.46 -0.34 -2.84 16 5 C -0.04 -0.51 5.48 -104.45 -0.57 -1.08 16 6 C -0.10 -1.45 8.21 36.00 0.30 -1.15 16 7 C 0.13 1.94 5.85 -83.61 -0.49 1.45 16 8 N -0.69 -9.94 3.84 -14.19 -0.05 -9.99 16 9 C 0.70 12.50 6.39 -86.92 -0.56 11.95 16 10 O -0.58 -12.10 12.81 5.29 0.07 -12.03 16 11 N -0.61 -11.01 2.95 -177.94 -0.52 -11.53 16 12 C 0.10 2.10 6.60 -3.60 -0.02 2.07 16 13 C 0.16 3.69 5.47 -3.59 -0.02 3.67 16 14 N -0.59 -14.21 2.96 -171.76 -0.51 -14.72 16 15 C -0.26 -6.70 9.60 -15.06 -0.14 -6.85 16 16 H 0.07 1.67 7.85 -52.48 -0.41 1.26 16 17 C 0.00 0.10 5.10 -17.43 -0.09 0.01 16 18 N -0.90 -25.63 10.83 55.49 0.60 -25.03 16 19 Si 0.91 21.08 29.56 -169.99 -5.03 16.05 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 C 0.13 2.55 6.70 -3.36 -0.02 2.53 16 24 C 0.09 1.49 6.58 -3.36 -0.02 1.46 16 25 C -0.06 -0.79 5.89 -104.46 -0.62 -1.41 16 26 C -0.11 -1.19 8.83 36.00 0.32 -0.87 16 27 C -0.11 -1.39 5.89 -104.50 -0.62 -2.00 16 28 C -0.10 -0.98 8.96 36.01 0.32 -0.66 16 29 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.10 0.49 8.14 -51.92 -0.42 0.06 16 31 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 32 H 0.13 1.32 6.29 -52.48 -0.33 0.99 16 33 H 0.09 1.38 7.08 -51.93 -0.37 1.01 16 34 H 0.05 0.63 8.13 -51.92 -0.42 0.21 16 35 H 0.06 0.92 6.12 -51.93 -0.32 0.60 16 36 H 0.40 4.79 6.13 -40.82 -0.25 4.54 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.65 6.99 -51.93 -0.36 1.29 16 39 H 0.11 2.82 5.86 -51.93 -0.30 2.52 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 0.73 5.61 -51.93 -0.29 0.44 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.68 6.72 -51.93 -0.35 0.33 16 48 H 0.07 0.82 7.44 -51.93 -0.39 0.43 16 49 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 50 H 0.07 0.54 6.72 -51.93 -0.35 0.19 16 51 H 0.07 0.64 7.52 -51.93 -0.39 0.25 16 LS Contribution 391.57 15.07 5.90 5.90 Total: -1.00 -32.01 391.57 -9.41 -41.42 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.83 Total: 4.89 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -1.85 Total: 8.72 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.49 Total: -61.28 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.12 Total: -15.71 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.01 -9.41 -41.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466482856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.542 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds