Wall clock time and date at job start Wed Apr 1 2020 05:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38115 * 119.99587 * 2 1 4 4 C 1.38816 * 119.98780 * 180.27188 * 3 2 1 5 5 N 1.40149 * 120.01243 * 179.72078 * 4 3 2 6 6 C 1.34778 * 119.99482 * 215.35005 * 5 4 3 7 7 O 1.21586 * 120.00367 * 355.18815 * 6 5 4 8 8 N 1.34778 * 119.99527 * 175.18486 * 6 5 4 9 9 C 1.46970 * 120.59227 * 185.18496 * 8 6 5 10 10 C 1.53369 * 108.63308 * 235.24920 * 9 8 6 11 11 N 1.46968 * 108.63482 * 310.57263 * 10 9 8 12 12 C 1.36936 * 120.59327 * 235.20268 * 11 10 9 13 13 H 1.08005 * 119.99470 * 148.42857 * 12 11 10 14 14 C 1.38802 * 120.00162 * 328.15300 * 12 11 10 15 15 N 1.31620 * 120.00461 * 346.91859 * 14 12 11 16 16 Si 1.86803 * 119.99859 * 166.91846 * 14 12 11 17 17 H 1.48496 * 109.47187 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47222 * 120.00281 * 16 14 12 19 19 H 1.48511 * 109.46943 * 240.00117 * 16 14 12 20 20 C 1.46964 * 118.80746 * 55.48350 * 11 10 9 21 21 C 1.46959 * 120.59633 * 5.20627 * 8 6 5 22 22 C 1.38858 * 119.96620 * 359.45009 * 4 3 2 23 23 C 1.38070 * 119.98929 * 0.27233 * 22 4 3 24 24 C 1.38696 * 119.98967 * 179.71974 * 2 1 3 25 25 O 1.35975 * 119.99135 * 359.97438 * 24 2 1 26 26 C 1.42895 * 117.00171 * 174.51617 * 25 24 2 27 27 C 1.52998 * 109.47420 * 84.49487 * 26 25 24 28 28 C 1.53001 * 109.46864 * 204.49349 * 26 25 24 29 29 H 1.09003 * 109.47441 * 270.27713 * 1 2 3 30 30 H 1.08997 * 109.47212 * 30.27922 * 1 2 3 31 31 H 1.09002 * 109.47565 * 150.27711 * 1 2 3 32 32 H 1.08001 * 120.00542 * 0.02562 * 3 2 1 33 33 H 0.96991 * 120.00229 * 35.35502 * 5 4 3 34 34 H 1.08994 * 109.60910 * 115.50359 * 9 8 6 35 35 H 1.09003 * 109.60803 * 354.99154 * 9 8 6 36 36 H 1.09004 * 109.61030 * 190.83107 * 10 9 8 37 37 H 1.09001 * 109.75407 * 70.40409 * 10 9 8 38 38 H 0.96999 * 120.00285 * 179.97438 * 15 14 12 39 39 H 1.08997 * 109.61100 * 64.26826 * 20 11 10 40 40 H 1.09005 * 109.60790 * 184.77093 * 20 11 10 41 41 H 1.09002 * 109.61437 * 244.49508 * 21 8 6 42 42 H 1.09002 * 109.60929 * 4.83756 * 21 8 6 43 43 H 1.08006 * 119.99981 * 180.29670 * 22 4 3 44 44 H 1.07996 * 119.99109 * 180.02562 * 23 22 4 45 45 H 1.08997 * 109.47152 * 324.49426 * 26 25 24 46 46 H 1.08991 * 109.47305 * 300.00149 * 27 26 25 47 47 H 1.09006 * 109.47220 * 59.99912 * 27 26 25 48 48 H 1.09004 * 109.47042 * 179.97438 * 27 26 25 49 49 H 1.09004 * 109.47165 * 59.99762 * 28 26 25 50 50 H 1.09005 * 109.47517 * 179.97438 * 28 26 25 51 51 H 1.08997 * 109.47299 * 299.99987 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1962 0.0000 4 6 3.5856 1.1960 -0.0057 5 7 4.2867 2.4094 -0.0116 6 6 5.4454 2.5148 -0.6920 7 8 5.9272 1.5354 -1.2276 8 7 6.0699 3.7060 -0.7787 9 6 7.2719 3.8616 -1.6099 10 6 8.4021 4.4216 -0.7373 11 7 7.8936 5.5881 -0.0019 12 6 8.5288 6.7980 -0.0893 13 1 7.9600 7.7131 -0.0138 14 6 9.9042 6.8485 -0.2691 15 7 10.6304 5.7639 -0.0998 16 14 10.7247 8.4559 -0.7514 17 1 9.6952 9.5184 -0.8790 18 1 11.7085 8.8420 0.2918 19 1 11.4227 8.2850 -2.0510 20 6 6.6949 5.4310 0.8337 21 6 5.5615 4.8724 -0.0433 22 6 4.2790 -0.0070 0.0001 23 6 3.5876 -1.2021 0.0059 24 6 2.2002 -1.2013 0.0059 25 8 1.5199 -2.3786 0.0122 26 6 2.2927 -3.5750 -0.1037 27 6 2.8037 -3.9879 1.2780 28 6 1.4199 -4.6920 -0.6794 29 1 -0.3634 0.0050 1.0277 30 1 -0.3633 0.8874 -0.5181 31 1 -0.3634 -0.8924 -0.5095 32 1 1.6574 2.1315 0.0004 33 1 3.9382 3.1733 0.4739 34 1 7.0645 4.5521 -2.4273 35 1 7.5664 2.8923 -2.0123 36 1 9.2372 4.7233 -1.3695 37 1 8.7341 3.6603 -0.0314 38 1 11.5915 5.7991 -0.2258 39 1 6.9054 4.7388 1.6489 40 1 6.4024 6.3995 1.2394 41 1 5.2323 5.6350 -0.7492 42 1 4.7245 4.5713 0.5866 43 1 5.3591 -0.0078 0.0005 44 1 4.1269 -2.1378 0.0109 45 1 3.1398 -3.3976 -0.7663 46 1 3.4254 -3.1922 1.6882 47 1 1.9566 -4.1653 1.9407 48 1 3.3928 -4.9008 1.1897 49 1 1.0558 -4.3978 -1.6638 50 1 2.0094 -5.6046 -0.7683 51 1 0.5728 -4.8693 -0.0169 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476173327.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:34 Heat of formation + Delta-G solvation = -23.652878 kcal Electronic energy + Delta-G solvation = -30678.405873 eV Core-core repulsion = 26578.533427 eV Total energy + Delta-G solvation = -4099.872446 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.95216 -41.06878 -39.18557 -38.22836 -35.92478 -35.60449 -34.00670 -33.27684 -33.01727 -31.95829 -30.01902 -28.54322 -28.18820 -27.49696 -25.59356 -24.64291 -24.21706 -23.27760 -21.89948 -21.76538 -20.55844 -19.74832 -19.06287 -18.28121 -17.95236 -17.11832 -16.88144 -16.50003 -16.39794 -16.13741 -15.65025 -15.49944 -15.34396 -15.20709 -15.08858 -15.00509 -14.62795 -14.31797 -14.07123 -13.93772 -13.65699 -13.43921 -13.35533 -13.17984 -13.09202 -12.97241 -12.92083 -12.71848 -12.69521 -12.47961 -12.27036 -12.16731 -12.04498 -11.90551 -11.83247 -11.68236 -11.60426 -11.14609 -10.76757 -10.62978 -9.86764 -9.75315 -8.70509 -8.53939 -7.88082 -5.42385 0.32441 0.38210 1.47545 1.49377 1.52985 1.60108 2.00818 2.28259 2.49859 2.77873 2.80401 3.27779 3.58357 3.79997 3.83469 3.90182 4.01267 4.16763 4.17559 4.20201 4.26151 4.28855 4.34832 4.47382 4.50265 4.56760 4.65335 4.71092 4.77973 4.80385 4.83169 4.85793 4.89862 4.91380 4.93700 5.04345 5.05991 5.19951 5.22003 5.26047 5.30232 5.39706 5.45184 5.46820 5.56865 5.61026 5.65736 5.91190 5.96219 6.37230 6.50088 6.85576 7.09962 7.43393 7.77754 8.33016 9.16776 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026767 B = 0.001994 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.796976 B =14037.834164 C =14661.816606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.106 4.106 3 C -0.103 4.103 4 C 0.119 3.881 5 N -0.672 5.672 6 C 0.701 3.299 7 O -0.620 6.620 8 N -0.614 5.614 9 C 0.121 3.879 10 C 0.172 3.828 11 N -0.608 5.608 12 C -0.261 4.261 13 H 0.076 0.924 14 C -0.051 4.051 15 N -0.938 5.938 16 Si 0.971 3.029 17 H -0.261 1.261 18 H -0.295 1.295 19 H -0.292 1.292 20 C 0.126 3.874 21 C 0.103 3.897 22 C -0.107 4.107 23 C -0.190 4.190 24 C 0.106 3.894 25 O -0.314 6.314 26 C 0.066 3.934 27 C -0.177 4.177 28 C -0.143 4.143 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.160 0.840 33 H 0.419 0.581 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.068 0.932 37 H -0.010 1.010 38 H 0.250 0.750 39 H 0.012 0.988 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.138 0.862 45 H 0.069 0.931 46 H 0.050 0.950 47 H 0.068 0.932 48 H 0.088 0.912 49 H 0.061 0.939 50 H 0.094 0.906 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.389 -14.862 1.255 27.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.123 4.123 4 C 0.025 3.975 5 N -0.324 5.324 6 C 0.403 3.597 7 O -0.500 6.500 8 N -0.350 5.350 9 C -0.004 4.004 10 C 0.045 3.955 11 N -0.331 5.331 12 C -0.391 4.391 13 H 0.094 0.906 14 C -0.246 4.246 15 N -0.584 5.584 16 Si 0.799 3.201 17 H -0.185 1.185 18 H -0.222 1.222 19 H -0.219 1.219 20 C 0.000 4.000 21 C -0.021 4.021 22 C -0.127 4.127 23 C -0.209 4.209 24 C 0.060 3.940 25 O -0.229 6.229 26 C 0.010 3.990 27 C -0.234 4.234 28 C -0.200 4.200 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.177 0.823 33 H 0.260 0.740 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.008 0.992 38 H 0.059 0.941 39 H 0.030 0.970 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.124 0.876 43 H 0.132 0.868 44 H 0.156 0.844 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.107 0.893 49 H 0.080 0.920 50 H 0.113 0.887 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.062 -15.513 0.869 27.807 hybrid contribution 1.684 0.939 0.121 1.932 sum -21.377 -14.574 0.990 25.891 Atomic orbital electron populations 1.20606 0.88349 1.03387 1.03050 1.19335 0.97741 0.89335 1.04316 1.20814 0.90709 0.98931 1.01889 1.17597 0.91184 0.84696 1.04067 1.42534 1.22591 1.13813 1.53423 1.15981 0.80960 0.83317 0.79434 1.90843 1.67782 1.37129 1.54294 1.47256 1.29204 1.08654 1.49852 1.22033 0.84655 1.00679 0.93003 1.20867 0.93904 0.87575 0.93178 1.44205 1.30010 1.07479 1.51415 1.19586 0.89475 0.85568 1.44499 0.90633 1.25989 0.97284 1.00075 1.01273 1.70163 1.05151 1.29605 1.53456 0.85156 0.78279 0.79831 0.76836 1.18500 1.22208 1.21924 1.21563 0.87123 0.99501 0.91813 1.22394 0.96697 0.87351 0.95645 1.21044 1.00315 0.91619 0.99747 1.21227 0.93325 0.98754 1.07645 1.18875 0.90016 0.86474 0.98617 1.86088 1.36429 1.12310 1.88043 1.22669 0.94956 0.83426 0.97902 1.22368 1.02139 1.02576 0.96364 1.21852 1.00425 0.96427 1.01302 0.90402 0.90065 0.91457 0.82265 0.74039 0.91276 0.90666 0.91359 0.99186 0.94068 0.97040 0.89855 0.90022 0.87636 0.86762 0.84395 0.91343 0.93081 0.91261 0.89326 0.91983 0.88736 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 9.79 71.23 0.70 -0.73 16 2 C -0.11 -2.19 5.89 -19.79 -0.12 -2.31 16 3 C -0.10 -2.14 9.62 22.38 0.22 -1.92 16 4 C 0.12 3.21 6.29 38.10 0.24 3.45 16 5 N -0.67 -18.08 5.26 -317.06 -1.67 -19.75 16 6 C 0.70 24.87 8.14 179.05 1.46 26.33 16 7 O -0.62 -26.48 13.22 -3.99 -0.05 -26.54 16 8 N -0.61 -21.68 2.95 -835.14 -2.46 -24.14 16 9 C 0.12 4.91 6.60 86.41 0.57 5.48 16 10 C 0.17 8.42 5.46 86.41 0.47 8.89 16 11 N -0.61 -29.34 2.95 -697.33 -2.05 -31.39 16 12 C -0.26 -13.67 9.56 84.03 0.80 -12.87 16 13 H 0.08 3.75 7.86 -2.91 -0.02 3.73 16 14 C -0.05 -2.76 4.99 84.86 0.42 -2.34 16 15 N -0.94 -55.18 11.20 21.65 0.24 -54.94 16 16 Si 0.97 43.69 29.57 68.60 2.03 45.72 16 17 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 18 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 19 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 20 C 0.13 4.74 6.70 86.57 0.58 5.32 16 21 C 0.10 2.97 6.58 86.57 0.57 3.54 16 22 C -0.11 -3.23 8.69 22.38 0.19 -3.03 16 23 C -0.19 -4.84 8.21 22.35 0.18 -4.65 16 24 C 0.11 2.45 6.57 22.50 0.15 2.59 16 25 O -0.31 -6.40 8.84 -93.27 -0.82 -7.22 16 26 C 0.07 1.03 2.85 30.59 0.09 1.12 16 27 C -0.18 -2.41 9.16 71.98 0.66 -1.75 16 28 C -0.14 -1.55 9.56 71.98 0.69 -0.86 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 31 H 0.07 1.03 7.53 -2.39 -0.02 1.02 16 32 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 33 H 0.42 8.31 6.29 -92.71 -0.58 7.73 16 34 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.07 3.15 6.99 -2.39 -0.02 3.13 16 36 H 0.07 3.74 6.13 -2.38 -0.01 3.73 16 37 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 38 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 39 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.08 2.85 7.93 -2.38 -0.02 2.83 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.11 2.11 5.61 -2.39 -0.01 2.10 16 43 H 0.11 4.11 6.26 -2.91 -0.02 4.09 16 44 H 0.14 3.09 5.40 -2.91 -0.02 3.07 16 45 H 0.07 1.13 6.34 -2.39 -0.02 1.11 16 46 H 0.05 0.84 6.85 -2.39 -0.02 0.83 16 47 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 48 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 49 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 51 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -71.43 399.02 3.44 -67.99 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.36 Total: 24.01 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: 7.87 Total: 26.26 kcal Atomic # 7 Polarization: -124.28 SS G_CDS: -5.94 Total: -130.22 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.88 Total: -33.76 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -71.43 3.44 -67.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476173327.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.334 kcal (2) G-P(sol) polarization free energy of solvation -71.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds