Wall clock time and date at job start Wed Apr 1 2020 05:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37963 * 120.07233 * 2 1 4 4 C 1.38358 * 120.14265 * 180.31758 * 3 2 1 5 5 C 1.38356 * 120.29241 * 359.67989 * 4 3 2 6 6 C 1.37963 * 120.14842 * 0.02562 * 5 4 3 7 7 C 1.50692 * 120.07524 * 180.02562 * 6 5 4 8 8 C 1.39573 * 120.07563 * 179.71960 * 2 1 3 9 9 C 1.47846 * 120.14388 * 359.97438 * 8 2 1 10 10 O 1.21552 * 120.00237 * 269.45482 * 9 8 2 11 11 N 1.34777 * 119.99810 * 89.72387 * 9 8 2 12 12 C 1.46499 * 120.00195 * 0.02562 * 11 9 8 13 13 C 1.46506 * 120.00268 * 180.02562 * 11 9 8 14 14 H 1.09005 * 109.46745 * 359.97438 * 13 11 9 15 15 C 1.52992 * 109.47288 * 119.99968 * 13 11 9 16 16 C 1.52998 * 109.46848 * 240.00304 * 13 11 9 17 17 N 1.46900 * 109.47481 * 55.00039 * 16 13 11 18 18 C 1.46898 * 111.00093 * 179.97438 * 17 16 13 19 19 C 1.50710 * 109.46960 * 179.97438 * 18 17 16 20 20 O 1.21288 * 119.99747 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99839 * 179.97438 * 19 18 17 22 22 C 1.37093 * 119.99798 * 180.02562 * 21 19 18 23 23 H 1.08000 * 120.00050 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99694 * 180.02562 * 22 21 19 25 25 N 1.31418 * 119.99787 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00433 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.47094 * 89.99831 * 26 24 22 28 28 H 1.48498 * 109.47237 * 210.00296 * 26 24 22 29 29 H 1.48503 * 109.46803 * 330.00210 * 26 24 22 30 30 H 1.09006 * 109.47501 * 270.27709 * 1 2 3 31 31 H 1.09007 * 109.47312 * 30.28095 * 1 2 3 32 32 H 1.09000 * 109.47005 * 150.27990 * 1 2 3 33 33 H 1.07999 * 119.92765 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.85141 * 179.69811 * 4 3 2 35 35 H 1.08003 * 119.92745 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.47551 * 269.97437 * 7 6 5 37 37 H 1.08998 * 109.47729 * 29.97679 * 7 6 5 38 38 H 1.09006 * 109.47045 * 149.97409 * 7 6 5 39 39 H 1.08994 * 109.47750 * 89.99387 * 12 11 9 40 40 H 1.09006 * 109.47278 * 209.99943 * 12 11 9 41 41 H 1.09005 * 109.46881 * 329.99727 * 12 11 9 42 42 H 1.08996 * 109.47595 * 299.99994 * 15 13 11 43 43 H 1.09005 * 109.47280 * 60.00263 * 15 13 11 44 44 H 1.09002 * 109.46985 * 180.02562 * 15 13 11 45 45 H 1.09001 * 109.46770 * 174.99576 * 16 13 11 46 46 H 1.08994 * 109.47398 * 294.99345 * 16 13 11 47 47 H 1.00904 * 110.99796 * 303.95154 * 17 16 13 48 48 H 1.08993 * 109.47166 * 299.99453 * 18 17 16 49 49 H 1.08997 * 109.47354 * 59.99892 * 18 17 16 50 50 H 0.97003 * 119.99662 * 0.02562 * 21 19 18 51 51 H 0.96999 * 119.99602 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1939 0.0000 4 6 3.5819 1.1956 -0.0066 5 6 4.2812 0.0018 -0.0066 6 6 3.6021 -1.1991 -0.0005 7 6 4.3655 -2.4983 0.0000 8 6 2.2064 -1.2078 0.0059 9 6 1.4721 -2.4910 0.0128 10 8 1.1793 -3.0181 1.0682 11 7 1.1321 -3.0790 -1.1513 12 6 1.4906 -2.4470 -2.4234 13 6 0.4039 -4.3503 -1.1446 14 1 0.2282 -4.6629 -0.1153 15 6 -0.9366 -4.1740 -1.8605 16 6 1.2314 -5.4157 -1.8665 17 7 2.5634 -5.5004 -1.2527 18 6 3.3875 -6.5161 -1.9213 19 6 4.7435 -6.5736 -1.2661 20 8 4.9980 -5.8408 -0.3337 21 7 5.6729 -7.4399 -1.7157 22 6 6.9063 -7.4926 -1.1193 23 1 7.1329 -6.8401 -0.2891 24 6 7.8646 -8.3854 -1.5832 25 7 9.0467 -8.4362 -1.0112 26 14 7.4724 -9.5144 -3.0187 27 1 7.8405 -8.8433 -4.2912 28 1 8.2450 -10.7752 -2.8823 29 1 6.0196 -9.8222 -3.0237 30 1 -0.3634 0.0050 1.0277 31 1 -0.3634 0.8875 -0.5182 32 1 -0.3633 -0.8925 -0.5095 33 1 1.6583 2.1292 0.0004 34 1 4.1183 2.1330 -0.0115 35 1 5.3612 0.0101 -0.0122 36 1 4.5451 -2.8147 -1.0274 37 1 5.3192 -2.3593 0.5093 38 1 3.7845 -3.2609 0.5188 39 1 2.4712 -2.8009 -2.7414 40 1 0.7486 -2.7049 -3.1792 41 1 1.5186 -1.3648 -2.2962 42 1 -1.5261 -3.4150 -1.3463 43 1 -0.7605 -3.8616 -2.8899 44 1 -1.4785 -5.1197 -1.8551 45 1 0.7317 -6.3809 -1.7847 46 1 1.3323 -5.1468 -2.9179 47 1 3.0218 -4.6015 -1.2581 48 1 2.9026 -7.4888 -1.8394 49 1 3.5034 -6.2552 -2.9732 50 1 5.4691 -8.0262 -2.4611 51 1 9.7156 -9.0597 -1.3348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482333789.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:09 Heat of formation + Delta-G solvation = -41.236368 kcal Electronic energy + Delta-G solvation = -31777.216461 eV Core-core repulsion = 27676.581538 eV Total energy + Delta-G solvation = -4100.634923 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.77752 -38.90920 -38.35613 -36.80588 -34.68060 -33.82632 -33.68257 -32.58571 -31.64821 -31.21970 -27.77906 -27.76008 -27.03723 -26.71541 -25.04704 -23.81111 -22.97482 -21.15714 -20.79046 -19.42539 -19.14041 -18.31892 -17.61915 -16.65292 -16.49695 -16.06298 -15.54896 -15.46472 -14.92802 -14.77421 -14.51544 -14.13885 -14.08273 -13.89316 -13.59612 -13.39932 -13.21415 -13.15895 -13.07750 -12.88513 -12.78333 -12.69488 -12.49910 -12.39038 -12.25419 -11.93936 -11.88138 -11.74731 -11.64560 -11.54291 -11.39113 -11.18281 -11.11690 -10.98754 -10.59319 -9.96689 -9.81817 -9.55602 -8.89342 -8.80179 -8.68787 -8.51955 -8.17688 -8.10118 -6.29997 -3.81097 1.03122 1.22655 2.59337 2.87105 3.02912 3.06297 3.15017 3.54043 3.75831 4.04747 4.11190 4.40468 4.61144 4.65704 4.77793 4.82315 4.87277 4.92111 5.05260 5.07560 5.09841 5.22849 5.24569 5.32882 5.34470 5.36439 5.41486 5.43777 5.50938 5.52941 5.57591 5.64472 5.72301 5.79557 5.80916 5.85727 5.93088 5.93478 5.97366 6.03133 6.29179 6.31496 6.43040 6.49429 6.54615 6.82339 7.10890 7.25497 7.58659 7.61016 8.13997 8.15893 8.61328 8.96499 9.43831 9.84521 10.83235 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013073 B = 0.002978 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.260205 B = 9399.575938 C =10930.012471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.054 4.054 3 C -0.134 4.134 4 C -0.099 4.099 5 C -0.128 4.128 6 C -0.037 4.037 7 C -0.120 4.120 8 C -0.125 4.125 9 C 0.574 3.426 10 O -0.520 6.520 11 N -0.607 5.607 12 C 0.075 3.925 13 C 0.135 3.865 14 H 0.112 0.888 15 C -0.159 4.159 16 C 0.050 3.950 17 N -0.665 5.665 18 C 0.046 3.954 19 C 0.449 3.551 20 O -0.558 6.558 21 N -0.592 5.592 22 C -0.303 4.303 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.882 5.882 26 Si 0.879 3.121 27 H -0.272 1.272 28 H -0.277 1.277 29 H -0.269 1.269 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.029 0.971 47 H 0.350 0.650 48 H 0.087 0.913 49 H 0.041 0.959 50 H 0.370 0.630 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.239 16.279 -7.195 26.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.055 4.055 3 C -0.152 4.152 4 C -0.117 4.117 5 C -0.146 4.146 6 C -0.038 4.038 7 C -0.177 4.177 8 C -0.128 4.128 9 C 0.362 3.638 10 O -0.395 6.395 11 N -0.341 5.341 12 C -0.069 4.069 13 C 0.032 3.968 14 H 0.129 0.871 15 C -0.217 4.217 16 C -0.081 4.081 17 N -0.299 5.299 18 C -0.086 4.086 19 C 0.235 3.765 20 O -0.440 6.440 21 N -0.231 5.231 22 C -0.431 4.431 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.047 0.953 47 H 0.170 0.830 48 H 0.106 0.894 49 H 0.059 0.941 50 H 0.202 0.798 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.201 15.959 -5.470 25.560 hybrid contribution 0.268 -0.584 -2.141 2.236 sum -18.933 15.375 -7.611 25.549 Atomic orbital electron populations 1.20855 0.91013 1.02717 1.02928 1.19808 0.95819 0.91768 0.98079 1.20874 0.94266 0.97030 1.02993 1.21245 0.94160 0.98085 0.98235 1.21051 1.00282 0.91537 1.01702 1.20137 0.91802 0.96566 0.95294 1.20899 1.00554 0.93114 1.03088 1.19631 0.93606 0.92808 1.06763 1.18247 0.77936 0.84059 0.83551 1.90812 1.53853 1.64245 1.30567 1.47847 1.57355 1.22889 1.05984 1.21776 1.00717 0.98664 0.85694 1.21199 0.90347 0.82321 1.02900 0.87051 1.22105 0.96335 1.02711 1.00584 1.22342 0.91231 0.99118 0.95406 1.60015 1.02316 1.11720 1.55816 1.21735 0.94031 0.97387 0.95483 1.19702 0.85481 0.84410 0.86915 1.90570 1.79989 1.43716 1.29677 1.42206 1.13583 1.35395 1.31966 1.19425 0.86654 1.21124 1.15943 0.86267 1.25034 0.95335 0.97732 0.98102 1.69625 1.04409 1.37211 1.40997 0.86677 0.78501 0.81327 0.82909 1.19735 1.20209 1.19501 0.90646 0.91115 0.91636 0.85800 0.85810 0.85353 0.90833 0.90661 0.89961 0.92765 0.90796 0.90760 0.92046 0.92294 0.91065 0.89852 0.95317 0.82957 0.89438 0.94068 0.79782 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.62 36.00 0.35 -0.71 16 2 C -0.05 -0.60 5.46 -104.23 -0.57 -1.17 16 3 C -0.13 -1.27 9.69 -39.64 -0.38 -1.65 16 4 C -0.10 -0.96 10.04 -39.49 -0.40 -1.35 16 5 C -0.13 -1.46 9.69 -39.64 -0.38 -1.85 16 6 C -0.04 -0.51 5.91 -104.23 -0.62 -1.13 16 7 C -0.12 -1.90 9.19 36.00 0.33 -1.57 16 8 C -0.13 -1.67 3.93 -104.97 -0.41 -2.08 16 9 C 0.57 8.42 4.05 -12.33 -0.05 8.37 16 10 O -0.52 -9.74 16.42 5.32 0.09 -9.65 16 11 N -0.61 -7.09 1.83 -175.05 -0.32 -7.41 16 12 C 0.07 0.67 9.40 59.85 0.56 1.24 16 13 C 0.14 1.53 2.95 -67.93 -0.20 1.32 16 14 H 0.11 1.57 6.90 -51.93 -0.36 1.21 16 15 C -0.16 -1.24 9.17 37.15 0.34 -0.89 16 16 C 0.05 0.58 5.03 -3.83 -0.02 0.56 16 17 N -0.66 -10.74 6.12 -115.06 -0.70 -11.44 16 18 C 0.05 0.78 6.17 -4.97 -0.03 0.75 16 19 C 0.45 10.18 7.82 -10.98 -0.09 10.10 16 20 O -0.56 -14.75 15.78 5.55 0.09 -14.66 16 21 N -0.59 -14.06 5.09 -10.96 -0.06 -14.12 16 22 C -0.30 -8.55 10.16 -14.94 -0.15 -8.70 16 23 H 0.12 3.85 7.39 -52.49 -0.39 3.47 16 24 C 0.04 1.12 5.50 -17.46 -0.10 1.02 16 25 N -0.88 -25.85 13.96 55.50 0.77 -25.08 16 26 Si 0.88 19.39 27.74 -169.99 -4.71 14.67 16 27 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.46 8.09 -51.92 -0.42 0.04 16 32 H 0.06 0.61 7.08 -51.93 -0.37 0.24 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 36 H 0.07 1.15 8.01 -51.93 -0.42 0.73 16 37 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 38 H 0.08 1.56 6.93 -51.93 -0.36 1.20 16 39 H 0.05 0.52 8.13 -51.93 -0.42 0.10 16 40 H 0.07 0.50 6.43 -51.93 -0.33 0.16 16 41 H 0.07 0.64 6.53 -51.93 -0.34 0.30 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.39 6.66 -51.93 -0.35 0.04 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.03 0.29 7.84 -51.93 -0.41 -0.12 16 47 H 0.35 5.94 6.83 -39.29 -0.27 5.67 16 48 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 51 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 413.43 15.07 6.23 6.23 Total: -1.00 -34.92 413.43 -8.48 -43.41 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -8.05 Total: 15.80 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.82 Total: 2.26 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.31 Total: -58.05 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: 0.17 Total: -24.31 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.92 -8.48 -43.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482333789.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.170 kcal (2) G-P(sol) polarization free energy of solvation -34.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds