Wall clock time and date at job start Wed Apr 1 2020 05:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37951 * 120.07888 * 2 1 4 4 C 1.38357 * 120.14967 * 180.02562 * 3 2 1 5 5 C 1.38365 * 120.28994 * 359.95568 * 4 3 2 6 6 C 1.37949 * 120.14613 * 0.04431 * 5 4 3 7 7 C 1.50696 * 120.07546 * 179.97438 * 6 5 4 8 8 C 1.39575 * 119.85507 * 359.97438 * 6 5 4 9 9 C 1.47841 * 120.14825 * 179.72736 * 8 6 5 10 10 O 1.21547 * 120.00486 * 89.99798 * 9 8 6 11 11 N 1.34777 * 119.99739 * 270.00030 * 9 8 6 12 12 C 1.46500 * 120.00263 * 0.02562 * 11 9 8 13 13 C 1.46507 * 120.00164 * 179.97438 * 11 9 8 14 14 H 1.08998 * 109.46650 * 0.02562 * 13 11 9 15 15 C 1.52997 * 109.47385 * 240.00429 * 13 11 9 16 16 C 1.52997 * 109.46950 * 119.99825 * 13 11 9 17 17 N 1.46903 * 109.47460 * 305.00162 * 16 13 11 18 18 C 1.46898 * 110.99735 * 179.97438 * 17 16 13 19 19 C 1.50697 * 109.46934 * 180.02562 * 18 17 16 20 20 O 1.21294 * 120.00238 * 359.97438 * 19 18 17 21 21 N 1.34775 * 120.00550 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00715 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99619 * 0.02562 * 22 21 19 24 24 C 1.38944 * 120.00250 * 179.97438 * 22 21 19 25 25 N 1.31415 * 120.00368 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 120.00156 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47308 * 89.99992 * 26 24 22 28 28 H 1.48497 * 109.47306 * 210.00115 * 26 24 22 29 29 H 1.48497 * 109.47026 * 329.99958 * 26 24 22 30 30 H 1.09003 * 109.46862 * 269.98078 * 1 2 3 31 31 H 1.09000 * 109.46858 * 29.97571 * 1 2 3 32 32 H 1.08992 * 109.47430 * 149.97910 * 1 2 3 33 33 H 1.08006 * 119.92612 * 0.02562 * 3 2 1 34 34 H 1.08004 * 119.85618 * 179.97438 * 4 3 2 35 35 H 1.08004 * 119.92467 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.47498 * 270.01957 * 7 6 5 37 37 H 1.08999 * 109.47290 * 30.02405 * 7 6 5 38 38 H 1.09003 * 109.47399 * 150.01861 * 7 6 5 39 39 H 1.09002 * 109.47470 * 89.99747 * 12 11 9 40 40 H 1.09001 * 109.47295 * 209.99929 * 12 11 9 41 41 H 1.08999 * 109.46825 * 329.99686 * 12 11 9 42 42 H 1.09001 * 109.46784 * 299.99906 * 15 13 11 43 43 H 1.09001 * 109.47109 * 59.99387 * 15 13 11 44 44 H 1.08998 * 109.47165 * 179.97438 * 15 13 11 45 45 H 1.08999 * 109.47233 * 65.00506 * 16 13 11 46 46 H 1.09007 * 109.46855 * 185.00116 * 16 13 11 47 47 H 1.00895 * 110.99396 * 56.04780 * 17 16 13 48 48 H 1.09001 * 109.47496 * 299.99801 * 18 17 16 49 49 H 1.09000 * 109.47209 * 60.00270 * 18 17 16 50 50 H 0.97007 * 119.99830 * 0.02562 * 21 19 18 51 51 H 0.96993 * 120.00261 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1937 0.0000 4 6 3.5819 1.1955 -0.0005 5 6 4.2813 0.0016 -0.0001 6 6 3.6021 -1.1992 -0.0001 7 6 4.3654 -2.4985 -0.0003 8 6 2.2064 -1.2080 0.0000 9 6 1.4720 -2.4911 -0.0061 10 8 1.1702 -3.0237 1.0440 11 7 1.1371 -3.0702 -1.1761 12 6 1.5013 -2.4287 -2.4418 13 6 0.4098 -4.3420 -1.1822 14 1 0.2294 -4.6622 -0.1561 15 6 1.2408 -5.4013 -1.9089 16 6 -0.9280 -4.1609 -1.9021 17 7 -1.6756 -3.0616 -1.2772 18 6 -2.9684 -2.8580 -1.9444 19 6 -3.7048 -1.7247 -1.2778 20 8 -3.2023 -1.1440 -0.3389 21 7 -4.9221 -1.3570 -1.7241 22 6 -5.5923 -0.3263 -1.1174 23 1 -5.1445 0.1913 -0.2819 24 6 -6.8471 0.0532 -1.5779 25 7 -7.4892 1.0414 -0.9967 26 14 -7.6213 -0.8415 -3.0234 27 1 -8.4248 -1.9863 -2.5243 28 1 -8.5015 0.0928 -3.7700 29 1 -6.5531 -1.3424 -3.9252 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5141 33 1 1.6584 2.1291 0.0004 34 1 4.1184 2.1328 -0.0010 35 1 5.3613 0.0098 -0.0002 36 1 4.5497 -2.8116 -1.0280 37 1 5.3167 -2.3612 0.5138 38 1 3.7820 -3.2628 0.5133 39 1 2.4834 -2.7804 -2.7581 40 1 0.7627 -2.6808 -3.2027 41 1 1.5288 -1.3475 -2.3063 42 1 1.4209 -5.0808 -2.9350 43 1 2.1939 -5.5302 -1.3960 44 1 0.6999 -6.3476 -1.9130 45 1 -0.7473 -3.9271 -2.9513 46 1 -1.5072 -5.0816 -1.8296 47 1 -1.1328 -2.2111 -1.2740 48 1 -2.8014 -2.6149 -2.9938 49 1 -3.5619 -3.7695 -1.8726 50 1 -5.3245 -1.8221 -2.4743 51 1 -8.3653 1.3061 -1.3179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482333791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:14 Heat of formation + Delta-G solvation = -39.336594 kcal Electronic energy + Delta-G solvation = -31778.501373 eV Core-core repulsion = 27677.948830 eV Total energy + Delta-G solvation = -4100.552543 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.78602 -38.91471 -38.36330 -36.81905 -34.67337 -33.82557 -33.70017 -32.60082 -31.65366 -31.21415 -27.79512 -27.75309 -27.02704 -26.72582 -25.06944 -23.81700 -22.98467 -21.17801 -20.79200 -19.42704 -19.14130 -18.33079 -17.61796 -16.66635 -16.57248 -16.05127 -15.53790 -15.47324 -14.91904 -14.75835 -14.49623 -14.19606 -14.07864 -13.92043 -13.61278 -13.34438 -13.21407 -13.12846 -13.08054 -12.90413 -12.81520 -12.67558 -12.60135 -12.33132 -12.24713 -12.01134 -11.87468 -11.76657 -11.62617 -11.53720 -11.34762 -11.18142 -11.12051 -10.99429 -10.59693 -9.97041 -9.82320 -9.55969 -8.89697 -8.82664 -8.67864 -8.51848 -8.17899 -8.11107 -6.30289 -3.81481 1.02870 1.22381 2.59254 2.86661 3.01801 3.06900 3.14819 3.53894 3.74963 4.03060 4.10814 4.39720 4.61639 4.66178 4.76683 4.82552 4.87914 4.90828 5.02487 5.08104 5.09056 5.21884 5.22523 5.32557 5.34894 5.36103 5.41815 5.45598 5.47929 5.52581 5.59807 5.63828 5.72208 5.78092 5.80259 5.85031 5.92895 5.95860 5.97118 6.02697 6.29017 6.31619 6.43470 6.47011 6.50539 6.81609 7.09218 7.25134 7.58642 7.62198 8.13677 8.15491 8.60886 8.96114 9.43419 9.83979 10.82923 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013075 B = 0.002978 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.020255 B = 9399.720038 C =10928.095977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.040 4.040 3 C -0.128 4.128 4 C -0.099 4.099 5 C -0.133 4.133 6 C -0.052 4.052 7 C -0.119 4.119 8 C -0.125 4.125 9 C 0.574 3.426 10 O -0.520 6.520 11 N -0.607 5.607 12 C 0.075 3.925 13 C 0.135 3.865 14 H 0.112 0.888 15 C -0.157 4.157 16 C 0.048 3.952 17 N -0.665 5.665 18 C 0.046 3.954 19 C 0.449 3.551 20 O -0.558 6.558 21 N -0.591 5.591 22 C -0.303 4.303 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.882 5.882 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.029 0.971 46 H 0.084 0.916 47 H 0.348 0.652 48 H 0.042 0.958 49 H 0.088 0.912 50 H 0.370 0.630 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.607 -8.163 -7.272 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.040 4.040 3 C -0.146 4.146 4 C -0.117 4.117 5 C -0.151 4.151 6 C -0.052 4.052 7 C -0.176 4.176 8 C -0.128 4.128 9 C 0.362 3.638 10 O -0.395 6.395 11 N -0.341 5.341 12 C -0.069 4.069 13 C 0.032 3.968 14 H 0.130 0.870 15 C -0.216 4.216 16 C -0.083 4.083 17 N -0.300 5.300 18 C -0.087 4.087 19 C 0.235 3.765 20 O -0.440 6.440 21 N -0.231 5.231 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.047 0.953 46 H 0.103 0.897 47 H 0.170 0.830 48 H 0.060 0.940 49 H 0.106 0.894 50 H 0.202 0.798 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 23.317 -8.308 -5.551 25.368 hybrid contribution -0.603 -0.055 -2.150 2.234 sum 22.715 -8.362 -7.701 25.401 Atomic orbital electron populations 1.20930 0.88841 1.03611 1.04133 1.20145 0.96892 0.91494 0.95493 1.21037 0.94183 0.97610 1.01781 1.21248 0.94223 0.98018 0.98209 1.20881 0.99684 0.91627 1.02952 1.19796 0.91746 0.95814 0.97883 1.20849 1.00014 0.94311 1.02390 1.19634 0.93360 0.93054 1.06793 1.18249 0.77969 0.84099 0.83499 1.90809 1.53434 1.64104 1.31108 1.47853 1.57103 1.23184 1.05974 1.21773 1.00518 0.98703 0.85858 1.21200 0.89805 0.82904 1.02859 0.87043 1.22084 1.00429 0.98556 1.00511 1.22364 0.93962 0.96574 0.95357 1.60100 1.04216 1.10189 1.55476 1.21743 0.92100 0.99362 0.95486 1.19695 0.83019 0.86809 0.87008 1.90572 1.67508 1.56482 1.29415 1.42205 1.16719 1.32871 1.31322 1.19424 0.99476 1.09007 1.15257 0.86262 1.25031 0.96386 0.96676 0.98091 1.69620 1.14395 1.27231 1.40981 0.86676 0.79963 0.80198 0.82552 1.19626 1.20246 1.19592 0.89822 0.90809 0.90934 0.85327 0.85793 0.85794 0.90982 0.91060 0.91314 0.92495 0.91053 0.90773 0.92356 0.92064 0.91136 0.95260 0.89728 0.82960 0.94036 0.89373 0.79775 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 9.62 36.00 0.35 -1.53 16 2 C -0.04 -0.54 5.46 -104.23 -0.57 -1.11 16 3 C -0.13 -1.46 9.69 -39.64 -0.38 -1.85 16 4 C -0.10 -0.95 10.04 -39.49 -0.40 -1.35 16 5 C -0.13 -1.27 9.69 -39.64 -0.38 -1.66 16 6 C -0.05 -0.57 5.91 -104.23 -0.62 -1.19 16 7 C -0.12 -1.08 9.62 36.00 0.35 -0.73 16 8 C -0.13 -1.68 3.93 -104.97 -0.41 -2.10 16 9 C 0.57 8.49 4.05 -12.33 -0.05 8.44 16 10 O -0.52 -9.78 16.43 5.32 0.09 -9.69 16 11 N -0.61 -7.18 1.83 -175.05 -0.32 -7.50 16 12 C 0.07 0.68 9.30 59.85 0.56 1.24 16 13 C 0.14 1.54 2.95 -67.93 -0.20 1.34 16 14 H 0.11 1.58 6.90 -51.93 -0.36 1.22 16 15 C -0.16 -1.25 9.19 37.16 0.34 -0.90 16 16 C 0.05 0.56 4.98 -3.82 -0.02 0.54 16 17 N -0.66 -10.78 6.12 -115.06 -0.70 -11.48 16 18 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 19 C 0.45 10.19 7.82 -10.99 -0.09 10.10 16 20 O -0.56 -14.78 15.78 5.55 0.09 -14.69 16 21 N -0.59 -14.05 5.09 -10.97 -0.06 -14.10 16 22 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 23 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 24 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 25 N -0.88 -25.82 13.96 55.50 0.77 -25.04 16 26 Si 0.88 19.36 27.74 -169.99 -4.71 14.65 16 27 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 29 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 32 H 0.07 1.24 4.46 -51.93 -0.23 1.01 16 33 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 35 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 38 H 0.07 0.75 7.08 -51.93 -0.37 0.38 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.58 6.53 -51.93 -0.34 0.24 16 41 H 0.07 0.73 6.53 -51.93 -0.34 0.39 16 42 H 0.06 0.39 7.67 -51.93 -0.40 0.00 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.03 0.30 6.88 -51.93 -0.36 -0.06 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.35 5.94 4.95 -39.29 -0.19 5.75 16 48 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 50 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 51 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 409.69 15.07 6.17 6.17 Total: -1.00 -34.97 409.69 -8.35 -43.31 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -7.87 Total: 16.07 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.81 Total: 2.30 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.31 Total: -58.12 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: 0.17 Total: -24.39 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.71 Total: 14.65 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.97 -8.35 -43.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482333791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.975 kcal (2) G-P(sol) polarization free energy of solvation -34.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds