Wall clock time and date at job start Wed Apr 1 2020 04:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38384 * 119.85743 * 2 1 4 4 C 1.37927 * 120.14754 * 180.28128 * 3 2 1 5 5 C 1.39598 * 119.85278 * 359.46696 * 4 3 2 6 6 C 1.47843 * 120.14402 * 180.27163 * 5 4 3 7 7 O 1.21555 * 119.99462 * 130.07622 * 6 5 4 8 8 N 1.34773 * 120.00621 * 310.07686 * 6 5 4 9 9 C 1.46503 * 119.99538 * 4.45671 * 8 6 5 10 10 C 1.46503 * 120.00294 * 184.45307 * 8 6 5 11 11 H 1.09000 * 109.47225 * 0.02562 * 10 8 6 12 12 C 1.52996 * 109.46989 * 240.00188 * 10 8 6 13 13 C 1.52998 * 109.47109 * 119.99891 * 10 8 6 14 14 N 1.46894 * 109.47102 * 305.00404 * 13 10 8 15 15 C 1.46906 * 110.99694 * 179.97438 * 14 13 10 16 16 C 1.50706 * 109.46712 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00229 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99541 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99992 * 179.97438 * 18 16 15 20 20 H 1.08010 * 119.99514 * 0.02562 * 19 18 16 21 21 C 1.38941 * 120.00099 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00228 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99869 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47233 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47190 * 120.00294 * 23 21 19 26 26 H 1.48508 * 109.47021 * 240.00103 * 23 21 19 27 27 C 1.39557 * 119.71034 * 0.26258 * 5 4 3 28 28 C 1.50707 * 120.07267 * 180.02562 * 27 5 4 29 29 C 1.37975 * 119.85327 * 359.97438 * 27 5 4 30 30 H 1.09003 * 109.47010 * 270.27045 * 1 2 3 31 31 H 1.08998 * 109.47243 * 30.27160 * 1 2 3 32 32 H 1.08997 * 109.47380 * 150.27079 * 1 2 3 33 33 H 1.08005 * 119.92420 * 0.02562 * 3 2 1 34 34 H 1.08001 * 120.07617 * 179.75328 * 4 3 2 35 35 H 1.08996 * 109.47370 * 93.19973 * 9 8 6 36 36 H 1.09005 * 109.46735 * 213.19295 * 9 8 6 37 37 H 1.09000 * 109.47273 * 333.19055 * 9 8 6 38 38 H 1.09002 * 109.47062 * 180.02562 * 12 10 8 39 39 H 1.09006 * 109.47359 * 299.99712 * 12 10 8 40 40 H 1.09003 * 109.47385 * 59.99968 * 12 10 8 41 41 H 1.09006 * 109.47062 * 65.00328 * 13 10 8 42 42 H 1.08993 * 109.47239 * 184.99833 * 13 10 8 43 43 H 1.00894 * 111.00023 * 303.94869 * 14 13 10 44 44 H 1.08993 * 109.47007 * 299.99592 * 15 14 13 45 45 H 1.09004 * 109.47200 * 60.00238 * 15 14 13 46 46 H 0.96998 * 120.00234 * 0.02562 * 18 16 15 47 47 H 0.96997 * 120.00121 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.46590 * 84.56409 * 28 27 5 49 49 H 1.08996 * 109.47076 * 204.57079 * 28 27 5 50 50 H 1.09002 * 109.46842 * 324.56855 * 28 27 5 51 51 H 1.08004 * 119.92933 * 179.97438 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5751 1.2072 -0.0059 5 6 4.2762 0.0000 -0.0005 6 6 5.7546 0.0000 -0.0007 7 8 6.3624 -0.6742 0.8078 8 7 6.4285 0.7474 -0.8972 9 6 5.6992 1.6344 -1.8070 10 6 7.8902 0.6729 -0.9618 11 1 8.2514 -0.0341 -0.2150 12 6 8.4840 2.0555 -0.6851 13 6 8.3159 0.2045 -2.3547 14 7 7.6501 -1.0668 -2.6685 15 6 8.0355 -1.5478 -4.0020 16 6 7.3349 -2.8511 -4.2877 17 8 6.5877 -3.3317 -3.4620 18 7 7.5387 -3.4827 -5.4608 19 6 6.9018 -4.6686 -5.7206 20 1 6.2364 -5.0965 -4.9853 21 6 7.1115 -5.3193 -6.9302 22 7 7.9207 -4.7984 -7.8250 23 14 6.2431 -6.9349 -7.2844 24 1 5.3937 -7.3052 -6.1239 25 1 5.3931 -6.7854 -8.4929 26 1 7.2526 -7.9988 -7.5177 27 6 3.5753 -1.2068 0.0051 28 6 4.3239 -2.5148 0.0115 29 6 2.1956 -1.1998 0.0060 30 1 -0.3633 0.0049 1.0277 31 1 -0.3634 0.8875 -0.5180 32 1 -0.3634 -0.8924 -0.5096 33 1 1.6523 2.1335 0.0004 34 1 4.1116 2.1445 -0.0099 35 1 5.6370 2.6312 -1.3704 36 1 6.2241 1.6876 -2.7608 37 1 4.6940 1.2442 -1.9667 38 1 9.5715 2.0002 -0.7336 39 1 8.1228 2.7623 -1.4322 40 1 8.1807 2.3892 0.3073 41 1 8.0325 0.9549 -3.0928 42 1 9.3964 0.0638 -2.3763 43 1 7.8455 -1.7610 -1.9629 44 1 7.7498 -0.8095 -4.7511 45 1 9.1143 -1.7007 -4.0353 46 1 8.1366 -3.0985 -6.1210 47 1 8.0668 -5.2525 -8.6695 48 1 4.5886 -2.7768 1.0358 49 1 3.6933 -3.2964 -0.4122 50 1 5.2312 -2.4171 -0.5846 51 1 1.6519 -2.1331 0.0100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482361465.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:11 Heat of formation + Delta-G solvation = -71.101521 kcal Electronic energy + Delta-G solvation = -31172.043552 eV Core-core repulsion = 27070.113578 eV Total energy + Delta-G solvation = -4101.929973 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.57271 -40.19190 -39.68546 -37.88846 -36.18843 -35.58662 -34.41241 -33.52428 -33.23380 -32.04557 -28.97838 -28.36734 -28.15697 -27.65754 -26.68836 -24.67218 -23.63706 -23.00165 -21.46888 -21.05002 -20.17816 -19.87231 -18.46644 -17.98258 -17.50852 -16.98531 -16.70650 -16.48705 -16.11497 -16.04711 -15.75457 -15.51499 -15.21166 -15.00786 -14.87321 -14.65253 -14.34975 -14.11923 -14.07475 -14.05207 -13.80148 -13.54673 -13.38749 -13.32845 -13.21869 -13.08473 -12.88566 -12.83672 -12.77982 -12.54438 -12.42259 -12.38951 -12.35282 -12.13628 -11.90233 -11.78647 -11.52639 -10.80564 -10.36227 -10.02222 -9.73411 -9.62762 -9.44331 -9.31937 -8.48253 -5.96652 0.05072 0.41654 1.34544 1.39612 1.53864 1.70799 2.04581 2.11243 2.27676 2.77426 2.90569 3.18944 3.47867 3.58225 3.81076 3.85458 3.92784 3.98534 4.14376 4.29022 4.32338 4.33623 4.34863 4.44230 4.49112 4.54363 4.58746 4.63401 4.67183 4.70373 4.72304 4.76488 4.79948 4.82973 4.88014 4.98913 5.00210 5.09911 5.20956 5.26970 5.28221 5.34596 5.39450 5.53701 5.62488 5.66556 5.87742 6.00799 6.09886 6.28341 6.43521 6.59442 7.11929 7.20707 7.55218 8.11519 8.69505 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009244 B = 0.003058 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.237844 B = 9152.968624 C =11271.959108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.066 4.066 3 C -0.132 4.132 4 C -0.079 4.079 5 C -0.154 4.154 6 C 0.563 3.437 7 O -0.584 6.584 8 N -0.583 5.583 9 C 0.075 3.925 10 C 0.135 3.865 11 H 0.071 0.929 12 C -0.146 4.146 13 C 0.050 3.950 14 N -0.677 5.677 15 C 0.068 3.932 16 C 0.437 3.563 17 O -0.621 6.621 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.075 0.925 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.276 1.276 25 H -0.269 1.269 26 H -0.270 1.270 27 C -0.050 4.050 28 C -0.106 4.106 29 C -0.141 4.141 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.161 0.839 34 H 0.150 0.850 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.334 0.666 44 H 0.107 0.893 45 H 0.064 0.936 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.070 0.930 49 H 0.066 0.934 50 H 0.042 0.958 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.116 20.074 12.034 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.066 4.066 3 C -0.149 4.149 4 C -0.097 4.097 5 C -0.157 4.157 6 C 0.352 3.648 7 O -0.465 6.465 8 N -0.313 5.313 9 C -0.067 4.067 10 C 0.032 3.968 11 H 0.089 0.911 12 C -0.204 4.204 13 C -0.079 4.079 14 N -0.308 5.308 15 C -0.065 4.065 16 C 0.224 3.776 17 O -0.507 6.507 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.093 0.907 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.200 1.200 25 H -0.194 1.194 26 H -0.195 1.195 27 C -0.050 4.050 28 C -0.163 4.163 29 C -0.159 4.159 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.178 0.822 34 H 0.168 0.832 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.074 0.926 43 H 0.151 0.849 44 H 0.125 0.875 45 H 0.082 0.918 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.061 0.939 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.787 19.668 12.549 24.596 hybrid contribution 1.173 -1.592 -0.533 2.048 sum -6.614 18.076 12.015 22.691 Atomic orbital electron populations 1.20895 0.88677 1.04002 1.03496 1.20457 0.97893 0.92529 0.95703 1.21309 0.93374 0.98766 1.01467 1.21509 0.94997 0.96418 0.96764 1.19809 0.92433 0.95087 1.08413 1.18573 0.87673 0.78167 0.80358 1.90707 1.70594 1.44175 1.41034 1.47564 1.06706 1.42262 1.34789 1.22055 0.97263 0.93455 0.93900 1.21179 0.79486 0.99404 0.96743 0.91093 1.21997 1.01826 0.94092 1.02506 1.22478 0.96830 0.91531 0.97082 1.60033 1.62299 1.06204 1.02288 1.21528 0.97656 0.93897 0.93394 1.20920 0.85720 0.88270 0.82656 1.90509 1.42282 1.69576 1.48308 1.41920 1.42202 1.21054 1.15950 1.19660 1.25056 0.99381 1.02053 0.90668 1.26003 0.97640 1.02719 0.94798 1.69671 1.36927 1.41189 1.08331 0.84908 0.78117 0.77349 0.78184 1.20030 1.19370 1.19534 1.20000 0.94518 0.94144 0.96386 1.20667 0.99411 0.94451 1.01745 1.21087 0.92332 0.99408 1.03047 0.89691 0.89555 0.91220 0.82189 0.83189 0.89773 0.90301 0.91503 0.89892 0.90163 0.92430 0.88722 0.92623 0.84851 0.87490 0.91803 0.76990 0.91288 0.91179 0.91464 0.93867 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.00 71.23 0.71 -0.72 16 2 C -0.07 -1.28 5.89 -19.81 -0.12 -1.39 16 3 C -0.13 -2.26 9.68 22.23 0.22 -2.04 16 4 C -0.08 -1.62 7.63 22.52 0.17 -1.44 16 5 C -0.15 -4.49 4.86 -20.09 -0.10 -4.59 16 6 C 0.56 18.13 6.31 86.79 0.55 18.68 16 7 O -0.58 -23.16 15.20 -3.89 -0.06 -23.22 16 8 N -0.58 -14.62 2.48 -826.00 -2.05 -16.67 16 9 C 0.08 1.37 8.19 127.77 1.05 2.42 16 10 C 0.14 3.09 2.88 44.99 0.13 3.22 16 11 H 0.07 2.05 6.91 -2.39 -0.02 2.04 16 12 C -0.15 -2.13 9.19 71.98 0.66 -1.47 16 13 C 0.05 1.14 4.92 86.30 0.42 1.56 16 14 N -0.68 -22.45 5.85 -517.93 -3.03 -25.48 16 15 C 0.07 2.35 6.17 85.56 0.53 2.88 16 16 C 0.44 21.40 7.82 87.66 0.69 22.09 16 17 O -0.62 -35.79 15.78 -3.04 -0.05 -35.83 16 18 N -0.57 -30.04 5.29 -306.98 -1.62 -31.67 16 19 C -0.33 -19.28 9.68 84.04 0.81 -18.47 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 22 N -0.92 -50.12 13.05 21.66 0.28 -49.84 16 23 Si 0.99 43.73 29.55 68.60 2.03 45.75 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 27 C -0.05 -1.55 5.91 -19.61 -0.12 -1.67 16 28 C -0.11 -3.78 8.89 71.24 0.63 -3.14 16 29 C -0.14 -3.56 9.31 22.23 0.21 -3.35 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.78 8.08 -2.39 -0.02 0.76 16 32 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 33 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 34 H 0.15 2.23 6.66 -2.91 -0.02 2.21 16 35 H 0.08 0.97 7.60 -2.39 -0.02 0.95 16 36 H 0.08 1.33 6.55 -2.38 -0.02 1.32 16 37 H 0.07 1.40 5.70 -2.39 -0.01 1.38 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.87 7.67 -2.38 -0.02 0.86 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.09 1.78 6.90 -2.38 -0.02 1.77 16 42 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.33 12.92 8.43 -89.70 -0.76 12.17 16 44 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 45 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 46 H 0.40 19.59 7.90 -92.71 -0.73 18.85 16 47 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 48 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 49 H 0.07 2.24 8.05 -2.39 -0.02 2.22 16 50 H 0.04 1.85 7.09 -2.39 -0.02 1.83 16 51 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -78.22 415.56 1.88 -76.35 By element: Atomic # 1 Polarization: 48.76 SS G_CDS: -0.53 Total: 48.23 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 6.91 Total: 12.37 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -6.42 Total: -123.65 kcal Atomic # 8 Polarization: -58.95 SS G_CDS: -0.11 Total: -59.05 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -78.22 1.88 -76.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482361465.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.244 kcal (2) G-P(sol) polarization free energy of solvation -78.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds