Wall clock time and date at job start Wed Apr 1 2020 04:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38379 * 119.92843 * 2 1 4 4 C 1.38333 * 120.29327 * 180.27364 * 3 2 1 5 5 C 1.37979 * 120.14206 * 359.45488 * 4 3 2 6 6 C 1.39552 * 119.85365 * 0.26922 * 5 4 3 7 7 C 1.47850 * 120.14555 * 179.97438 * 6 5 4 8 8 O 1.21552 * 119.99934 * 129.99561 * 7 6 5 9 9 N 1.34778 * 120.00071 * 309.99702 * 7 6 5 10 10 C 1.46508 * 119.99703 * 4.35555 * 9 7 6 11 11 C 1.46494 * 119.99987 * 184.35955 * 9 7 6 12 12 H 1.08990 * 109.47464 * 0.02562 * 11 9 7 13 13 C 1.53011 * 109.47064 * 120.00116 * 11 9 7 14 14 C 1.52999 * 109.47120 * 239.99451 * 11 9 7 15 15 N 1.46901 * 109.46771 * 55.00191 * 14 11 9 16 16 C 1.46905 * 111.00086 * 179.97438 * 15 14 11 17 17 C 1.50695 * 109.47010 * 179.97438 * 16 15 14 18 18 O 1.21297 * 120.00279 * 0.02562 * 17 16 15 19 19 N 1.34781 * 120.00072 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00415 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99541 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00443 * 179.97438 * 20 19 17 23 23 N 1.31420 * 119.99707 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00360 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47029 * 90.00008 * 24 22 20 26 26 H 1.48493 * 109.47046 * 210.00244 * 24 22 20 27 27 H 1.48503 * 109.46863 * 330.00256 * 24 22 20 28 28 C 1.37929 * 119.92415 * 179.72690 * 2 1 3 29 29 C 1.50703 * 120.07803 * 359.97438 * 28 2 1 30 30 H 1.09002 * 109.47406 * 270.27566 * 1 2 3 31 31 H 1.09002 * 109.47185 * 30.27189 * 1 2 3 32 32 H 1.09002 * 109.47622 * 150.26937 * 1 2 3 33 33 H 1.08006 * 119.85374 * 0.02562 * 3 2 1 34 34 H 1.07995 * 119.93325 * 179.72207 * 4 3 2 35 35 H 1.08001 * 120.07584 * 180.29352 * 5 4 3 36 36 H 1.09003 * 109.46856 * 84.91755 * 10 9 7 37 37 H 1.08998 * 109.46791 * 204.91493 * 10 9 7 38 38 H 1.09001 * 109.46908 * 324.91661 * 10 9 7 39 39 H 1.08998 * 109.46885 * 180.02562 * 13 11 9 40 40 H 1.09001 * 109.46458 * 299.99655 * 13 11 9 41 41 H 1.09000 * 109.46759 * 59.99714 * 13 11 9 42 42 H 1.08995 * 109.47280 * 175.00038 * 14 11 9 43 43 H 1.08995 * 109.47733 * 295.00478 * 14 11 9 44 44 H 1.00900 * 110.99805 * 56.04419 * 15 14 11 45 45 H 1.08991 * 109.47302 * 300.00397 * 16 15 14 46 46 H 1.08998 * 109.46374 * 60.00193 * 16 15 14 47 47 H 0.97001 * 119.99229 * 359.97438 * 19 17 16 48 48 H 0.96990 * 119.99827 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.47159 * 276.15637 * 29 28 2 50 50 H 1.09002 * 109.46959 * 36.15228 * 29 28 2 51 51 H 1.08993 * 109.47342 * 156.15469 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 -0.0057 5 6 4.2812 0.0193 -0.0001 6 6 3.5911 -1.1936 0.0057 7 6 4.3352 -2.4712 0.0112 8 8 4.0567 -3.3332 0.8216 9 7 5.3222 -2.6800 -0.8825 10 6 5.7222 -1.6069 -1.7962 11 6 5.9950 -3.9801 -0.9403 12 1 5.5651 -4.6453 -0.1916 13 6 5.8080 -4.5898 -2.3311 14 6 7.4879 -3.7945 -0.6614 15 7 7.6638 -3.1004 0.6212 16 6 9.0882 -2.9049 0.9230 17 6 9.2286 -2.1910 2.2427 18 8 8.2395 -1.8764 2.8704 19 7 10.4533 -1.9019 2.7256 20 6 10.5812 -1.2529 3.9264 21 1 9.7005 -0.9729 4.4852 22 6 11.8438 -0.9554 4.4244 23 7 12.9154 -1.2958 3.7441 24 14 12.0179 -0.0705 6.0603 25 1 12.0927 -1.0684 7.1574 26 1 13.2567 0.7483 6.0506 27 1 10.8427 0.8121 6.2731 28 6 2.1951 -1.1954 0.0057 29 6 1.4416 -2.5005 0.0125 30 1 -0.3634 0.0049 1.0277 31 1 -0.3634 0.8875 -0.5181 32 1 -0.3634 -0.8924 -0.5096 33 1 1.6538 2.1326 0.0004 34 1 4.1136 2.1474 -0.0102 35 1 5.3611 0.0275 0.0002 36 1 6.4470 -0.9601 -1.3017 37 1 6.1716 -2.0394 -2.6900 38 1 4.8456 -1.0227 -2.0764 39 1 6.3082 -5.5572 -2.3739 40 1 4.7444 -4.7219 -2.5297 41 1 6.2377 -3.9246 -3.0801 42 1 7.9731 -4.7695 -0.6165 43 1 7.9358 -3.2023 -1.4594 44 1 7.2013 -3.5973 1.3677 45 1 9.5841 -3.8738 0.9791 46 1 9.5474 -2.3067 0.1360 47 1 11.2443 -2.1538 2.2237 48 1 13.7967 -1.0878 4.0916 49 1 1.1649 -2.7550 1.0356 50 1 0.5411 -2.4033 -0.5939 51 1 2.0737 -3.2872 -0.3992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482362911.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:18 Heat of formation + Delta-G solvation = -45.354682 kcal Electronic energy + Delta-G solvation = -30956.866874 eV Core-core repulsion = 26856.053367 eV Total energy + Delta-G solvation = -4100.813507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.61223 -38.91610 -38.18259 -36.69645 -34.73282 -33.83994 -33.46336 -32.51198 -31.29382 -31.09308 -27.81782 -27.57318 -27.06465 -26.39467 -25.01079 -23.90625 -23.04761 -21.04817 -20.89118 -19.38041 -18.96857 -17.84336 -17.23622 -16.66958 -16.09887 -16.03944 -15.75997 -15.30516 -14.91206 -14.57286 -14.47366 -14.31647 -14.07483 -13.90848 -13.57662 -13.48027 -13.23680 -13.12657 -12.98000 -12.81601 -12.69994 -12.62037 -12.32159 -12.31299 -11.98434 -11.90776 -11.73117 -11.67455 -11.56674 -11.46906 -11.40688 -11.01885 -10.97694 -10.85792 -10.37288 -10.19155 -9.69309 -9.47938 -8.83134 -8.67054 -8.58034 -8.37040 -8.00284 -7.92239 -6.39174 -3.79648 0.97496 1.26640 2.84344 3.01102 3.19780 3.28016 3.34516 3.65266 3.94757 4.10347 4.30990 4.52174 4.64267 4.74905 4.83714 4.88872 5.00203 5.03937 5.05895 5.13407 5.19537 5.22484 5.28823 5.33562 5.42546 5.47234 5.49161 5.53619 5.56112 5.58591 5.59130 5.67552 5.74821 5.80463 5.81671 5.87986 5.90614 5.99932 6.02990 6.12515 6.29530 6.31471 6.37092 6.46589 6.59344 6.84689 7.26062 7.44455 7.57932 7.70560 8.09601 8.28788 8.64825 9.21183 9.57601 10.09794 10.78754 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011211 B = 0.002647 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.010167 B =10574.149746 C =12222.113759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 C -0.100 4.100 4 C -0.128 4.128 5 C -0.083 4.083 6 C -0.119 4.119 7 C 0.571 3.429 8 O -0.533 6.533 9 N -0.587 5.587 10 C 0.079 3.921 11 C 0.138 3.862 12 H 0.100 0.900 13 C -0.159 4.159 14 C 0.048 3.952 15 N -0.663 5.663 16 C 0.052 3.948 17 C 0.441 3.559 18 O -0.579 6.579 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C -0.041 4.041 29 C -0.115 4.115 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.352 0.648 45 H 0.041 0.959 46 H 0.083 0.917 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.077 0.923 50 H 0.066 0.934 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.660 -0.835 -17.105 25.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.099 4.099 3 C -0.119 4.119 4 C -0.146 4.146 5 C -0.101 4.101 6 C -0.122 4.122 7 C 0.359 3.641 8 O -0.410 6.410 9 N -0.319 5.319 10 C -0.064 4.064 11 C 0.034 3.966 12 H 0.118 0.882 13 C -0.217 4.217 14 C -0.082 4.082 15 N -0.296 5.296 16 C -0.081 4.081 17 C 0.226 3.774 18 O -0.463 6.463 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.042 4.042 29 C -0.172 4.172 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.153 0.847 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.171 0.829 45 H 0.059 0.941 46 H 0.102 0.898 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.096 0.904 50 H 0.085 0.915 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.339 -0.430 -16.474 25.408 hybrid contribution 1.342 -0.402 0.758 1.593 sum -17.996 -0.832 -15.716 23.907 Atomic orbital electron populations 1.20825 0.91043 1.02733 1.02468 1.19649 0.96089 0.92327 1.01854 1.21150 0.94325 0.97348 0.99029 1.21084 0.94136 0.98110 1.01258 1.21469 1.00729 0.91229 0.96682 1.19754 0.93374 0.93505 1.05583 1.18185 0.79210 0.86518 0.80171 1.90761 1.67442 1.45494 1.37328 1.47424 1.35266 1.13333 1.35911 1.21872 1.00769 0.90501 0.93282 1.21098 0.92243 0.84990 0.98284 0.88178 1.22104 1.02360 1.01025 0.96228 1.22352 0.95127 0.97041 0.93704 1.60024 1.11607 1.53875 1.04058 1.21661 0.89517 0.99171 0.97755 1.19834 0.84304 0.85495 0.87738 1.90551 1.37385 1.57472 1.60847 1.41863 1.06101 1.51814 1.20488 1.19697 0.93792 1.32593 0.96585 0.87992 1.25250 0.94846 0.98149 0.99759 1.69614 0.98152 1.47656 1.39083 0.85865 0.77784 0.79244 0.81461 1.20442 1.20938 1.19403 1.19696 0.91873 0.95394 0.97237 1.20869 0.99492 0.93894 1.02912 0.91096 0.91652 0.91200 0.85925 0.85490 0.84719 0.91715 0.91271 0.91369 0.91283 0.92108 0.92069 0.94503 0.90887 0.82878 0.94055 0.89831 0.77534 0.91939 0.90431 0.91500 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.60 36.01 0.35 -0.52 16 2 C -0.10 -1.04 5.87 -104.68 -0.61 -1.66 16 3 C -0.10 -1.01 9.69 -39.49 -0.38 -1.39 16 4 C -0.13 -1.40 10.03 -39.64 -0.40 -1.80 16 5 C -0.08 -1.06 7.82 -39.19 -0.31 -1.37 16 6 C -0.12 -1.65 4.85 -104.97 -0.51 -2.16 16 7 C 0.57 8.74 6.27 -12.33 -0.08 8.66 16 8 O -0.53 -9.85 14.96 5.32 0.08 -9.77 16 9 N -0.59 -7.39 2.48 -175.04 -0.43 -7.82 16 10 C 0.08 0.79 8.21 59.85 0.49 1.28 16 11 C 0.14 1.60 2.87 -67.93 -0.20 1.41 16 12 H 0.10 1.37 6.91 -51.93 -0.36 1.01 16 13 C -0.16 -1.32 9.18 37.16 0.34 -0.98 16 14 C 0.05 0.59 4.98 -3.82 -0.02 0.57 16 15 N -0.66 -11.13 5.85 -115.06 -0.67 -11.80 16 16 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 17 C 0.44 10.69 7.82 -10.99 -0.09 10.60 16 18 O -0.58 -16.33 15.78 5.54 0.09 -16.24 16 19 N -0.57 -14.63 5.29 -10.96 -0.06 -14.69 16 20 C -0.30 -8.46 9.68 -14.94 -0.14 -8.61 16 21 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.91 13.05 55.50 0.72 -24.18 16 24 Si 0.93 21.47 29.55 -169.99 -5.02 16.44 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 C -0.04 -0.51 5.91 -104.23 -0.62 -1.13 16 29 C -0.12 -1.28 8.69 36.01 0.31 -0.96 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.07 0.47 6.04 -51.93 -0.31 0.16 16 33 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.14 1.79 6.42 -52.49 -0.34 1.45 16 36 H 0.06 0.72 7.11 -51.93 -0.37 0.35 16 37 H 0.07 0.54 6.44 -51.93 -0.33 0.21 16 38 H 0.07 0.63 6.32 -51.93 -0.33 0.30 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.44 6.66 -51.93 -0.35 0.10 16 42 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.81 7.84 -51.93 -0.41 0.40 16 44 H 0.35 6.67 8.43 -39.29 -0.33 6.34 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 47 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.07 0.56 6.21 -51.93 -0.32 0.24 16 51 H 0.07 0.84 6.38 -51.93 -0.33 0.51 16 LS Contribution 410.75 15.07 6.19 6.19 Total: -1.00 -34.47 410.75 -8.93 -43.40 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -7.84 Total: 15.14 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.98 Total: 3.33 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -0.44 Total: -58.50 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: 0.17 Total: -26.01 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.47 -8.93 -43.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482362911.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.955 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds