Wall clock time and date at job start Wed Apr 1 2020 04:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38379 * 119.92843 * 2 1 4 4 C 1.38333 * 120.29327 * 180.27364 * 3 2 1 5 5 C 1.37979 * 120.14206 * 359.45488 * 4 3 2 6 6 C 1.39552 * 119.85365 * 0.26922 * 5 4 3 7 7 C 1.47850 * 120.14555 * 179.97438 * 6 5 4 8 8 O 1.21552 * 119.99934 * 129.99561 * 7 6 5 9 9 N 1.34778 * 120.00071 * 309.99702 * 7 6 5 10 10 C 1.46508 * 119.99703 * 4.35555 * 9 7 6 11 11 C 1.46494 * 119.99987 * 184.35955 * 9 7 6 12 12 H 1.08990 * 109.47464 * 0.02562 * 11 9 7 13 13 C 1.53011 * 109.47064 * 120.00116 * 11 9 7 14 14 C 1.52999 * 109.47120 * 239.99451 * 11 9 7 15 15 N 1.46901 * 109.46771 * 55.00191 * 14 11 9 16 16 C 1.46905 * 111.00086 * 179.97438 * 15 14 11 17 17 C 1.50695 * 109.47010 * 179.97438 * 16 15 14 18 18 O 1.21297 * 120.00279 * 0.02562 * 17 16 15 19 19 N 1.34781 * 120.00072 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00415 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99541 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00443 * 179.97438 * 20 19 17 23 23 N 1.31420 * 119.99707 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00360 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47029 * 90.00008 * 24 22 20 26 26 H 1.48493 * 109.47046 * 210.00244 * 24 22 20 27 27 H 1.48503 * 109.46863 * 330.00256 * 24 22 20 28 28 C 1.37929 * 119.92415 * 179.72690 * 2 1 3 29 29 C 1.50703 * 120.07803 * 359.97438 * 28 2 1 30 30 H 1.09002 * 109.47406 * 270.27566 * 1 2 3 31 31 H 1.09002 * 109.47185 * 30.27189 * 1 2 3 32 32 H 1.09002 * 109.47622 * 150.26937 * 1 2 3 33 33 H 1.08006 * 119.85374 * 0.02562 * 3 2 1 34 34 H 1.07995 * 119.93325 * 179.72207 * 4 3 2 35 35 H 1.08001 * 120.07584 * 180.29352 * 5 4 3 36 36 H 1.09003 * 109.46856 * 84.91755 * 10 9 7 37 37 H 1.08998 * 109.46791 * 204.91493 * 10 9 7 38 38 H 1.09001 * 109.46908 * 324.91661 * 10 9 7 39 39 H 1.08998 * 109.46885 * 180.02562 * 13 11 9 40 40 H 1.09001 * 109.46458 * 299.99655 * 13 11 9 41 41 H 1.09000 * 109.46759 * 59.99714 * 13 11 9 42 42 H 1.08995 * 109.47280 * 175.00038 * 14 11 9 43 43 H 1.08995 * 109.47733 * 295.00478 * 14 11 9 44 44 H 1.00900 * 110.99805 * 56.04419 * 15 14 11 45 45 H 1.08991 * 109.47302 * 300.00397 * 16 15 14 46 46 H 1.08998 * 109.46374 * 60.00193 * 16 15 14 47 47 H 0.97001 * 119.99229 * 359.97438 * 19 17 16 48 48 H 0.96990 * 119.99827 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.47159 * 276.15637 * 29 28 2 50 50 H 1.09002 * 109.46959 * 36.15228 * 29 28 2 51 51 H 1.08993 * 109.47342 * 156.15469 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 -0.0057 5 6 4.2812 0.0193 -0.0001 6 6 3.5911 -1.1936 0.0057 7 6 4.3352 -2.4712 0.0112 8 8 4.0567 -3.3332 0.8216 9 7 5.3222 -2.6800 -0.8825 10 6 5.7222 -1.6069 -1.7962 11 6 5.9950 -3.9801 -0.9403 12 1 5.5651 -4.6453 -0.1916 13 6 5.8080 -4.5898 -2.3311 14 6 7.4879 -3.7945 -0.6614 15 7 7.6638 -3.1004 0.6212 16 6 9.0882 -2.9049 0.9230 17 6 9.2286 -2.1910 2.2427 18 8 8.2395 -1.8764 2.8704 19 7 10.4533 -1.9019 2.7256 20 6 10.5812 -1.2529 3.9264 21 1 9.7005 -0.9729 4.4852 22 6 11.8438 -0.9554 4.4244 23 7 12.9154 -1.2958 3.7441 24 14 12.0179 -0.0705 6.0603 25 1 12.0927 -1.0684 7.1574 26 1 13.2567 0.7483 6.0506 27 1 10.8427 0.8121 6.2731 28 6 2.1951 -1.1954 0.0057 29 6 1.4416 -2.5005 0.0125 30 1 -0.3634 0.0049 1.0277 31 1 -0.3634 0.8875 -0.5181 32 1 -0.3634 -0.8924 -0.5096 33 1 1.6538 2.1326 0.0004 34 1 4.1136 2.1474 -0.0102 35 1 5.3611 0.0275 0.0002 36 1 6.4470 -0.9601 -1.3017 37 1 6.1716 -2.0394 -2.6900 38 1 4.8456 -1.0227 -2.0764 39 1 6.3082 -5.5572 -2.3739 40 1 4.7444 -4.7219 -2.5297 41 1 6.2377 -3.9246 -3.0801 42 1 7.9731 -4.7695 -0.6165 43 1 7.9358 -3.2023 -1.4594 44 1 7.2013 -3.5973 1.3677 45 1 9.5841 -3.8738 0.9791 46 1 9.5474 -2.3067 0.1360 47 1 11.2443 -2.1538 2.2237 48 1 13.7967 -1.0878 4.0916 49 1 1.1649 -2.7550 1.0356 50 1 0.5411 -2.4033 -0.5939 51 1 2.0737 -3.2872 -0.3992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482362911.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:18 Heat of formation + Delta-G solvation = -68.897663 kcal Electronic energy + Delta-G solvation = -30957.887774 eV Core-core repulsion = 26856.053367 eV Total energy + Delta-G solvation = -4101.834407 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.61024 -40.21510 -39.72964 -37.88131 -36.21034 -35.62935 -34.39852 -33.48585 -33.25530 -32.10426 -28.99656 -28.61970 -27.97055 -27.20440 -26.70213 -25.01769 -24.33116 -21.97694 -21.76799 -21.11271 -20.17104 -19.87455 -18.24680 -17.97717 -17.45924 -16.99837 -16.91196 -16.64897 -16.41667 -16.06059 -15.81347 -15.39915 -15.23033 -15.07078 -15.01597 -14.67794 -14.24402 -14.18997 -14.08878 -13.83615 -13.57467 -13.54143 -13.50207 -13.30014 -13.18311 -13.08065 -12.89689 -12.80048 -12.71773 -12.56836 -12.51805 -12.44687 -12.43696 -12.14075 -11.81912 -11.74822 -11.53714 -10.81322 -10.38645 -10.03851 -9.76119 -9.56351 -9.51505 -9.31047 -8.49148 -5.97851 0.05084 0.38521 1.35417 1.39037 1.52038 1.76237 2.02978 2.05470 2.27158 2.74310 2.89850 3.17764 3.46508 3.56846 3.83797 3.86329 3.91949 4.09228 4.14500 4.22387 4.27659 4.30529 4.32704 4.41784 4.48326 4.52990 4.60844 4.63941 4.65238 4.70367 4.71073 4.73648 4.81137 4.85380 4.93503 4.93855 4.96574 5.07622 5.12681 5.27498 5.34482 5.38183 5.43109 5.49185 5.61909 5.65947 5.87183 6.01024 6.09580 6.28264 6.41490 6.58294 7.10625 7.19378 7.53708 8.10321 8.68313 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011211 B = 0.002647 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.010167 B =10574.149746 C =12222.113759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.098 4.098 4 C -0.130 4.130 5 C -0.098 4.098 6 C -0.143 4.143 7 C 0.561 3.439 8 O -0.580 6.580 9 N -0.583 5.583 10 C 0.079 3.921 11 C 0.135 3.865 12 H 0.072 0.928 13 C -0.147 4.147 14 C 0.052 3.948 15 N -0.678 5.678 16 C 0.068 3.932 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.334 4.334 21 H 0.074 0.926 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.271 1.271 26 H -0.267 1.267 27 H -0.275 1.275 28 C -0.059 4.059 29 C -0.109 4.109 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.121 0.879 36 H 0.052 0.948 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.094 0.906 44 H 0.334 0.666 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.067 0.933 50 H 0.095 0.905 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.865 0.084 -18.984 26.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.115 4.115 4 C -0.148 4.148 5 C -0.117 4.117 6 C -0.146 4.146 7 C 0.350 3.650 8 O -0.462 6.462 9 N -0.314 5.314 10 C -0.063 4.063 11 C 0.031 3.969 12 H 0.090 0.910 13 C -0.206 4.206 14 C -0.078 4.078 15 N -0.309 5.309 16 C -0.064 4.064 17 C 0.223 3.777 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.092 0.908 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.192 1.192 27 H -0.200 1.200 28 C -0.060 4.060 29 C -0.165 4.165 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.139 0.861 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.152 0.848 45 H 0.082 0.918 46 H 0.126 0.874 47 H 0.231 0.769 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.113 0.887 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.496 0.484 -18.425 26.829 hybrid contribution 1.384 -0.673 1.310 2.021 sum -18.112 -0.189 -17.116 24.921 Atomic orbital electron populations 1.20896 0.88667 1.04209 1.03158 1.20047 0.97830 0.91701 1.00370 1.21540 0.94022 0.98501 0.97475 1.21355 0.94925 0.98025 1.00511 1.21432 1.00224 0.91876 0.98121 1.19834 0.94261 0.93091 1.07390 1.18590 0.79741 0.86655 0.79987 1.90717 1.69044 1.47072 1.39322 1.47564 1.34276 1.14217 1.35310 1.21988 1.00923 0.89933 0.93482 1.21199 0.91568 0.84383 0.99757 0.90965 1.22027 1.02610 1.01926 0.93993 1.22474 0.95688 0.97891 0.91714 1.60043 1.10592 1.55072 1.05217 1.21523 0.90823 0.99678 0.94388 1.20956 0.83023 0.84376 0.89307 1.90522 1.38752 1.59115 1.62753 1.41915 1.06927 1.52044 1.20096 1.19618 0.93579 1.34979 0.98176 0.90768 1.26018 0.94072 0.98197 1.02862 1.69666 0.98557 1.47547 1.40224 0.84952 0.77945 0.78212 0.77379 1.19685 1.19169 1.19960 1.19955 0.91531 0.96670 0.97814 1.20818 1.00116 0.92955 1.02644 0.90652 0.89552 0.90399 0.82791 0.83610 0.86069 0.92962 0.88384 0.90731 0.89650 0.92415 0.90190 0.92661 0.88809 0.84817 0.91756 0.87356 0.76912 0.91229 0.91469 0.88663 0.93257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.60 71.24 0.68 -0.74 16 2 C -0.10 -1.96 5.87 -19.90 -0.12 -2.08 16 3 C -0.10 -1.77 9.69 22.33 0.22 -1.56 16 4 C -0.13 -2.76 10.03 22.23 0.22 -2.54 16 5 C -0.10 -2.61 7.82 22.53 0.18 -2.44 16 6 C -0.14 -4.15 4.85 -20.09 -0.10 -4.25 16 7 C 0.56 18.31 6.27 86.79 0.54 18.85 16 8 O -0.58 -23.30 14.96 -3.88 -0.06 -23.36 16 9 N -0.58 -15.00 2.48 -825.98 -2.05 -17.05 16 10 C 0.08 1.53 8.21 127.77 1.05 2.58 16 11 C 0.13 3.10 2.87 45.00 0.13 3.23 16 12 H 0.07 2.09 6.91 -2.39 -0.02 2.08 16 13 C -0.15 -2.17 9.18 71.99 0.66 -1.51 16 14 C 0.05 1.19 4.98 86.30 0.43 1.62 16 15 N -0.68 -22.89 5.85 -517.95 -3.03 -25.92 16 16 C 0.07 2.40 6.17 85.55 0.53 2.93 16 17 C 0.44 21.65 7.82 87.65 0.69 22.34 16 18 O -0.63 -36.89 15.78 -3.08 -0.05 -36.94 16 19 N -0.57 -30.23 5.29 -306.98 -1.62 -31.85 16 20 C -0.33 -19.56 9.68 84.04 0.81 -18.75 16 21 H 0.07 4.69 7.16 -2.91 -0.02 4.67 16 22 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 23 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 24 Si 0.99 43.97 29.55 68.60 2.03 46.00 16 25 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 28 C -0.06 -1.48 5.91 -19.61 -0.12 -1.59 16 29 C -0.11 -2.48 8.69 71.24 0.62 -1.87 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 0.75 8.09 -2.39 -0.02 0.73 16 32 H 0.08 0.86 6.04 -2.39 -0.01 0.84 16 33 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 34 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.12 3.45 6.42 -2.91 -0.02 3.43 16 36 H 0.05 1.16 7.11 -2.39 -0.02 1.14 16 37 H 0.10 1.29 6.44 -2.39 -0.02 1.28 16 38 H 0.07 1.36 6.32 -2.39 -0.02 1.34 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 0.89 6.66 -2.39 -0.02 0.87 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.09 1.80 7.84 -2.39 -0.02 1.78 16 44 H 0.33 13.28 8.43 -89.69 -0.76 12.52 16 45 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 47 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 48 H 0.28 14.18 8.31 -92.72 -0.77 13.41 16 49 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.09 1.52 6.21 -2.39 -0.01 1.51 16 51 H 0.05 1.29 6.38 -2.39 -0.02 1.28 16 Total: -1.00 -79.07 410.75 1.87 -77.20 By element: Atomic # 1 Polarization: 48.32 SS G_CDS: -0.52 Total: 47.80 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 6.90 Total: 14.07 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -6.42 Total: -124.76 kcal Atomic # 8 Polarization: -60.19 SS G_CDS: -0.11 Total: -60.30 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -79.07 1.87 -77.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482362911.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.299 kcal (2) G-P(sol) polarization free energy of solvation -79.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds