Wall clock time and date at job start Wed Apr 1 2020 05:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21291 * 119.99725 * 2 1 4 4 N 1.34770 * 120.00172 * 180.02562 * 2 1 3 5 5 C 1.39953 * 120.00040 * 185.27149 * 4 2 1 6 6 C 1.38992 * 120.00182 * 34.52101 * 5 4 2 7 7 C 1.38212 * 120.22581 * 179.97438 * 6 5 4 8 8 C 1.38022 * 120.22294 * 359.76305 * 7 6 5 9 9 C 1.50697 * 120.00379 * 180.28073 * 8 7 6 10 10 C 1.39580 * 119.99356 * 0.49057 * 8 7 6 11 11 C 1.47862 * 120.11288 * 179.76273 * 10 8 7 12 12 O 1.21550 * 119.99653 * 353.54377 * 11 10 8 13 13 N 1.34778 * 120.00076 * 173.54175 * 11 10 8 14 14 C 1.46503 * 119.99662 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46760 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.47384 * 295.00076 * 15 14 13 17 17 N 1.46499 * 109.47162 * 55.00144 * 15 14 13 18 18 C 1.36940 * 120.00346 * 204.72180 * 17 15 14 19 19 H 1.08000 * 119.99343 * 0.27594 * 18 17 15 20 20 C 1.38808 * 120.00212 * 180.27477 * 18 17 15 21 21 N 1.31619 * 120.00124 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99831 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47312 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46990 * 119.99849 * 22 20 18 25 25 H 1.48502 * 109.47003 * 240.00129 * 22 20 18 26 26 C 1.52996 * 109.47182 * 175.00031 * 15 14 13 27 27 C 1.53004 * 109.47362 * 60.00120 * 26 15 14 28 28 C 1.53004 * 109.47511 * 180.02562 * 26 15 14 29 29 C 1.38595 * 119.99972 * 214.50282 * 5 4 2 30 30 H 1.09001 * 109.46669 * 239.99213 * 1 2 3 31 31 H 1.08997 * 109.47261 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.46657 * 119.99713 * 1 2 3 33 33 H 0.97003 * 120.00467 * 5.26508 * 4 2 1 34 34 H 1.08000 * 119.88676 * 359.97438 * 6 5 4 35 35 H 1.07999 * 119.88578 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.47079 * 263.36659 * 9 8 7 37 37 H 1.08997 * 109.47168 * 23.36909 * 9 8 7 38 38 H 1.09000 * 109.47030 * 143.37716 * 9 8 7 39 39 H 0.96996 * 119.99886 * 359.97438 * 13 11 10 40 40 H 1.09008 * 109.46925 * 60.00247 * 14 13 11 41 41 H 1.08993 * 109.47146 * 299.99856 * 14 13 11 42 42 H 0.97001 * 119.99730 * 24.99652 * 17 15 14 43 43 H 0.96997 * 119.99935 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.47423 * 300.00172 * 26 15 14 45 45 H 1.09001 * 109.46809 * 59.99676 * 27 26 15 46 46 H 1.08994 * 109.47416 * 180.02562 * 27 26 15 47 47 H 1.09007 * 109.46685 * 300.00316 * 27 26 15 48 48 H 1.08995 * 109.46729 * 59.99818 * 28 26 15 49 49 H 1.08994 * 109.46938 * 179.97438 * 28 26 15 50 50 H 1.08995 * 109.46716 * 299.99729 * 28 26 15 51 51 H 1.08004 * 120.11339 * 0.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5760 -1.1697 0.1108 6 6 4.2127 -0.2120 0.8914 7 6 5.5901 -0.2105 1.0050 8 6 6.3425 -1.1631 0.3481 9 6 7.8436 -1.1608 0.4805 10 6 5.7130 -2.1260 -0.4425 11 6 6.5168 -3.1446 -1.1516 12 8 7.7303 -3.0752 -1.1429 13 7 5.9039 -4.1498 -1.8075 14 6 6.7003 -5.1593 -2.5096 15 6 5.7674 -6.1796 -3.1650 16 1 5.2259 -6.7256 -2.3925 17 7 4.8127 -5.4829 -4.0307 18 6 3.6035 -6.0576 -4.3186 19 1 3.3519 -7.0225 -3.9037 20 6 2.7013 -5.4000 -5.1434 21 7 3.0082 -4.2243 -5.6494 22 14 1.0516 -6.1837 -5.5355 23 1 0.9516 -7.4966 -4.8488 24 1 -0.0422 -5.2951 -5.0673 25 1 0.9342 -6.3827 -7.0024 26 6 6.5914 -7.1611 -4.0007 27 6 7.5885 -7.8888 -3.0966 28 6 5.6585 -8.1811 -4.6566 29 6 4.3227 -2.1275 -0.5569 30 1 -0.3633 -0.5140 0.8899 31 1 -0.3633 1.0276 0.0005 32 1 -0.3633 -0.5138 -0.8901 33 1 1.6991 -2.0054 -0.0780 34 1 3.6291 0.5337 1.4108 35 1 6.0791 0.5360 1.6133 36 1 8.2826 -0.6396 -0.3702 37 1 8.1262 -0.6533 1.4028 38 1 8.2078 -2.1879 0.5046 39 1 4.9355 -4.2054 -1.8141 40 1 7.3517 -5.6674 -1.7984 41 1 7.3061 -4.6757 -3.2758 42 1 5.0388 -4.6163 -4.4032 43 1 2.3776 -3.7647 -6.2255 44 1 7.1329 -6.6152 -4.7732 45 1 7.0470 -8.4348 -2.3240 46 1 8.1758 -8.5877 -3.6920 47 1 8.2531 -7.1619 -2.6297 48 1 4.9485 -7.6624 -5.3007 49 1 6.2456 -8.8800 -5.2522 50 1 5.1168 -8.7271 -3.8843 51 1 3.8299 -2.8725 -1.1640 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482574718.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:04 Heat of formation + Delta-G solvation = -45.766216 kcal Electronic energy + Delta-G solvation = -31060.703991 eV Core-core repulsion = 26959.872639 eV Total energy + Delta-G solvation = -4100.831352 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.73777 -39.72102 -38.13881 -37.15877 -35.09571 -34.03079 -33.17100 -31.81266 -31.40752 -30.32239 -29.73534 -28.02431 -26.33322 -26.01185 -24.21429 -23.45233 -22.07132 -21.73424 -20.84861 -20.00890 -19.28134 -18.13265 -17.37241 -17.11601 -16.17929 -15.73681 -15.70513 -15.32543 -15.27106 -14.79441 -14.55054 -14.30118 -14.01070 -13.70272 -13.62610 -13.57278 -13.41068 -13.09872 -12.86468 -12.73002 -12.63499 -12.25691 -12.19396 -12.06333 -11.87329 -11.75333 -11.65694 -11.38953 -11.08993 -11.01307 -10.88385 -10.66640 -10.33382 -10.32754 -10.13421 -10.09584 -9.97961 -9.59872 -9.33422 -8.98802 -8.97918 -8.60209 -8.05355 -7.08972 -5.87804 -3.17457 0.93850 1.22705 2.39896 2.91097 3.12420 3.32071 3.39718 3.41778 3.54179 3.91653 4.47330 4.50627 4.79349 4.84826 4.99355 5.02362 5.11428 5.24271 5.29883 5.33899 5.37213 5.40897 5.50026 5.60350 5.61657 5.71624 5.73588 5.84350 5.89130 5.94744 5.98732 6.08732 6.15638 6.16259 6.21626 6.33313 6.35064 6.39409 6.42290 6.50438 6.59629 6.62452 6.68465 6.91611 6.92780 7.04109 7.22213 7.26066 7.61050 7.91115 7.93995 8.29012 8.54136 9.41088 9.96281 10.32309 11.33684 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007757 B = 0.003892 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3608.945846 B = 7192.973678 C =10354.432897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.511 3.489 3 O -0.530 6.530 4 N -0.673 5.673 5 C 0.129 3.871 6 C -0.093 4.093 7 C -0.117 4.117 8 C -0.039 4.039 9 C -0.116 4.116 10 C -0.116 4.116 11 C 0.555 3.445 12 O -0.543 6.543 13 N -0.707 5.707 14 C 0.114 3.886 15 C 0.170 3.830 16 H 0.053 0.947 17 N -0.722 5.722 18 C -0.237 4.237 19 H 0.074 0.926 20 C -0.010 4.010 21 N -0.927 5.927 22 Si 0.901 3.099 23 H -0.280 1.280 24 H -0.293 1.293 25 H -0.292 1.292 26 C -0.109 4.109 27 C -0.149 4.149 28 C -0.139 4.139 29 C -0.100 4.100 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.414 0.586 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.408 0.592 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.063 0.937 45 H 0.049 0.951 46 H 0.045 0.955 47 H 0.051 0.949 48 H 0.086 0.914 49 H 0.031 0.969 50 H 0.040 0.960 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.435 3.001 14.161 14.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.300 3.700 3 O -0.406 6.406 4 N -0.319 5.319 5 C 0.036 3.964 6 C -0.113 4.113 7 C -0.135 4.135 8 C -0.040 4.040 9 C -0.172 4.172 10 C -0.119 4.119 11 C 0.342 3.658 12 O -0.423 6.423 13 N -0.358 5.358 14 C -0.010 4.010 15 C 0.059 3.941 16 H 0.071 0.929 17 N -0.363 5.363 18 C -0.368 4.368 19 H 0.091 0.909 20 C -0.207 4.207 21 N -0.575 5.575 22 Si 0.732 3.268 23 H -0.205 1.205 24 H -0.220 1.220 25 H -0.219 1.219 26 C -0.131 4.131 27 C -0.207 4.207 28 C -0.197 4.197 29 C -0.121 4.121 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.251 0.749 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.245 0.755 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.105 0.895 49 H 0.050 0.950 50 H 0.059 0.941 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.467 3.698 14.141 14.690 hybrid contribution -1.766 -0.625 -0.742 2.015 sum -0.299 3.073 13.399 13.751 Atomic orbital electron populations 1.21935 0.90672 1.05920 1.04812 1.21007 0.90940 0.83082 0.74963 1.90742 1.70679 1.31240 1.47903 1.43591 1.05135 1.10151 1.72981 1.17523 0.82868 0.98060 0.97969 1.21222 0.94811 0.98283 0.97026 1.20882 0.93022 0.98728 1.00889 1.20023 0.96974 0.92737 0.94284 1.21030 0.90214 1.04931 1.01072 1.19610 0.92615 0.98220 1.01491 1.18162 0.87365 0.81216 0.79042 1.90684 1.13670 1.76036 1.61933 1.45925 1.11447 1.26521 1.51928 1.21759 0.94112 0.89495 0.95678 1.20551 0.89876 0.91274 0.92374 0.92890 1.42495 1.15087 1.21916 1.56849 1.19240 0.91873 1.01696 1.23979 0.90855 1.24729 0.98570 0.96919 1.00452 1.69674 1.36058 1.14653 1.37128 0.86224 0.84324 0.78323 0.77938 1.20550 1.22008 1.21921 1.21727 0.96175 0.97147 0.98061 1.21943 0.99049 1.00020 0.99688 1.21821 0.99618 0.97690 1.00529 1.21181 0.92951 0.99843 0.98165 0.89035 0.88634 0.88758 0.74932 0.84823 0.85210 0.90840 0.92814 0.88684 0.75470 0.91445 0.91757 0.78074 0.93517 0.91878 0.93202 0.93559 0.93004 0.89505 0.94987 0.94078 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.32 36.01 0.37 -0.87 16 2 C 0.51 5.94 7.67 -10.99 -0.08 5.86 16 3 O -0.53 -8.28 14.85 5.55 0.08 -8.20 16 4 N -0.67 -7.42 5.34 -9.89 -0.05 -7.47 16 5 C 0.13 1.73 6.25 -83.74 -0.52 1.21 16 6 C -0.09 -1.24 8.65 -39.31 -0.34 -1.58 16 7 C -0.12 -1.47 9.65 -39.67 -0.38 -1.85 16 8 C -0.04 -0.54 5.91 -104.20 -0.62 -1.16 16 9 C -0.12 -1.52 8.71 36.00 0.31 -1.20 16 10 C -0.12 -1.77 5.87 -104.99 -0.62 -2.38 16 11 C 0.55 9.37 7.70 -12.32 -0.09 9.28 16 12 O -0.54 -10.12 13.35 5.32 0.07 -10.04 16 13 N -0.71 -11.61 5.34 -61.24 -0.33 -11.94 16 14 C 0.11 1.88 4.73 -4.04 -0.02 1.86 16 15 C 0.17 2.99 2.18 -67.93 -0.15 2.85 16 16 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 17 N -0.72 -15.74 4.45 -53.43 -0.24 -15.97 16 18 C -0.24 -5.73 7.55 -15.06 -0.11 -5.84 16 19 H 0.07 1.75 7.38 -52.49 -0.39 1.36 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -25.89 13.06 55.49 0.72 -25.16 16 22 Si 0.90 20.65 29.55 -169.99 -5.02 15.63 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C -0.11 -1.80 2.69 -90.62 -0.24 -2.05 16 27 C -0.15 -2.03 8.84 37.16 0.33 -1.70 16 28 C -0.14 -2.43 8.26 37.16 0.31 -2.12 16 29 C -0.10 -1.42 9.44 -38.98 -0.37 -1.79 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.67 8.12 -51.93 -0.42 0.25 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.41 3.40 8.82 -40.82 -0.36 3.04 16 34 H 0.13 1.75 6.49 -52.49 -0.34 1.41 16 35 H 0.13 1.31 8.05 -52.49 -0.42 0.88 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.56 8.04 -51.93 -0.42 0.14 16 38 H 0.09 1.39 5.87 -51.93 -0.31 1.08 16 39 H 0.41 6.69 6.21 -40.82 -0.25 6.44 16 40 H 0.07 1.04 6.71 -51.92 -0.35 0.69 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.39 9.35 7.80 -40.82 -0.32 9.03 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.67 6.54 -51.93 -0.34 0.33 16 48 H 0.09 1.80 5.99 -51.93 -0.31 1.49 16 49 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 51 H 0.14 1.88 6.45 -52.48 -0.34 1.54 16 LS Contribution 409.33 15.07 6.17 6.17 Total: -1.00 -30.93 409.33 -8.84 -39.77 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: -7.92 Total: 19.08 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -2.33 Total: -1.85 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.11 Total: -60.55 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: 0.15 Total: -18.25 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.93 -8.84 -39.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482574718.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.993 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds