Wall clock time and date at job start Wed Apr 1 2020 05:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21291 * 119.99725 * 2 1 4 4 N 1.34770 * 120.00172 * 180.02562 * 2 1 3 5 5 C 1.39953 * 120.00040 * 185.27149 * 4 2 1 6 6 C 1.38992 * 120.00182 * 34.52101 * 5 4 2 7 7 C 1.38212 * 120.22581 * 179.97438 * 6 5 4 8 8 C 1.38022 * 120.22294 * 359.76305 * 7 6 5 9 9 C 1.50697 * 120.00379 * 180.28073 * 8 7 6 10 10 C 1.39580 * 119.99356 * 0.49057 * 8 7 6 11 11 C 1.47862 * 120.11288 * 179.76273 * 10 8 7 12 12 O 1.21550 * 119.99653 * 353.54377 * 11 10 8 13 13 N 1.34778 * 120.00076 * 173.54175 * 11 10 8 14 14 C 1.46503 * 119.99662 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46760 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.47384 * 295.00076 * 15 14 13 17 17 N 1.46499 * 109.47162 * 55.00144 * 15 14 13 18 18 C 1.36940 * 120.00346 * 204.72180 * 17 15 14 19 19 H 1.08000 * 119.99343 * 0.27594 * 18 17 15 20 20 C 1.38808 * 120.00212 * 180.27477 * 18 17 15 21 21 N 1.31619 * 120.00124 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99831 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47312 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46990 * 119.99849 * 22 20 18 25 25 H 1.48502 * 109.47003 * 240.00129 * 22 20 18 26 26 C 1.52996 * 109.47182 * 175.00031 * 15 14 13 27 27 C 1.53004 * 109.47362 * 60.00120 * 26 15 14 28 28 C 1.53004 * 109.47511 * 180.02562 * 26 15 14 29 29 C 1.38595 * 119.99972 * 214.50282 * 5 4 2 30 30 H 1.09001 * 109.46669 * 239.99213 * 1 2 3 31 31 H 1.08997 * 109.47261 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.46657 * 119.99713 * 1 2 3 33 33 H 0.97003 * 120.00467 * 5.26508 * 4 2 1 34 34 H 1.08000 * 119.88676 * 359.97438 * 6 5 4 35 35 H 1.07999 * 119.88578 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.47079 * 263.36659 * 9 8 7 37 37 H 1.08997 * 109.47168 * 23.36909 * 9 8 7 38 38 H 1.09000 * 109.47030 * 143.37716 * 9 8 7 39 39 H 0.96996 * 119.99886 * 359.97438 * 13 11 10 40 40 H 1.09008 * 109.46925 * 60.00247 * 14 13 11 41 41 H 1.08993 * 109.47146 * 299.99856 * 14 13 11 42 42 H 0.97001 * 119.99730 * 24.99652 * 17 15 14 43 43 H 0.96997 * 119.99935 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.47423 * 300.00172 * 26 15 14 45 45 H 1.09001 * 109.46809 * 59.99676 * 27 26 15 46 46 H 1.08994 * 109.47416 * 180.02562 * 27 26 15 47 47 H 1.09007 * 109.46685 * 300.00316 * 27 26 15 48 48 H 1.08995 * 109.46729 * 59.99818 * 28 26 15 49 49 H 1.08994 * 109.46938 * 179.97438 * 28 26 15 50 50 H 1.08995 * 109.46716 * 299.99729 * 28 26 15 51 51 H 1.08004 * 120.11339 * 0.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5760 -1.1697 0.1108 6 6 4.2127 -0.2120 0.8914 7 6 5.5901 -0.2105 1.0050 8 6 6.3425 -1.1631 0.3481 9 6 7.8436 -1.1608 0.4805 10 6 5.7130 -2.1260 -0.4425 11 6 6.5168 -3.1446 -1.1516 12 8 7.7303 -3.0752 -1.1429 13 7 5.9039 -4.1498 -1.8075 14 6 6.7003 -5.1593 -2.5096 15 6 5.7674 -6.1796 -3.1650 16 1 5.2259 -6.7256 -2.3925 17 7 4.8127 -5.4829 -4.0307 18 6 3.6035 -6.0576 -4.3186 19 1 3.3519 -7.0225 -3.9037 20 6 2.7013 -5.4000 -5.1434 21 7 3.0082 -4.2243 -5.6494 22 14 1.0516 -6.1837 -5.5355 23 1 0.9516 -7.4966 -4.8488 24 1 -0.0422 -5.2951 -5.0673 25 1 0.9342 -6.3827 -7.0024 26 6 6.5914 -7.1611 -4.0007 27 6 7.5885 -7.8888 -3.0966 28 6 5.6585 -8.1811 -4.6566 29 6 4.3227 -2.1275 -0.5569 30 1 -0.3633 -0.5140 0.8899 31 1 -0.3633 1.0276 0.0005 32 1 -0.3633 -0.5138 -0.8901 33 1 1.6991 -2.0054 -0.0780 34 1 3.6291 0.5337 1.4108 35 1 6.0791 0.5360 1.6133 36 1 8.2826 -0.6396 -0.3702 37 1 8.1262 -0.6533 1.4028 38 1 8.2078 -2.1879 0.5046 39 1 4.9355 -4.2054 -1.8141 40 1 7.3517 -5.6674 -1.7984 41 1 7.3061 -4.6757 -3.2758 42 1 5.0388 -4.6163 -4.4032 43 1 2.3776 -3.7647 -6.2255 44 1 7.1329 -6.6152 -4.7732 45 1 7.0470 -8.4348 -2.3240 46 1 8.1758 -8.5877 -3.6920 47 1 8.2531 -7.1619 -2.6297 48 1 4.9485 -7.6624 -5.3007 49 1 6.2456 -8.8800 -5.2522 50 1 5.1168 -8.7271 -3.8843 51 1 3.8299 -2.8725 -1.1640 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482574718.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:03 Heat of formation + Delta-G solvation = -65.519763 kcal Electronic energy + Delta-G solvation = -31061.560569 eV Core-core repulsion = 26959.872639 eV Total energy + Delta-G solvation = -4101.687930 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.79913 -40.89588 -39.34856 -38.56294 -36.13439 -35.38815 -34.91269 -32.81431 -32.60588 -31.96515 -30.51392 -29.46936 -27.52241 -27.19451 -25.74793 -24.81839 -23.45411 -22.73603 -22.02807 -21.24699 -20.62761 -19.41623 -18.85516 -18.26154 -17.33524 -17.04762 -16.82579 -16.75774 -16.34771 -16.24234 -15.66920 -15.58720 -15.39385 -15.09725 -14.90500 -14.81734 -14.61574 -14.42553 -14.07796 -13.69913 -13.51637 -13.43947 -13.36624 -13.11281 -12.99276 -12.88199 -12.87196 -12.78403 -12.68840 -12.47799 -12.38885 -12.25389 -11.95654 -11.73626 -11.42822 -11.34778 -11.27210 -11.11466 -10.85646 -10.58250 -10.14363 -9.89817 -9.10152 -8.95035 -7.85887 -5.13498 -0.19687 0.17590 1.47117 1.49113 1.53251 1.60189 1.89218 2.04778 2.25601 2.60712 2.78602 3.47139 3.64856 3.69905 3.82066 3.89113 3.94918 3.96567 4.15750 4.28412 4.32318 4.34149 4.38249 4.47597 4.54004 4.63439 4.64278 4.70926 4.77306 4.85240 4.88606 4.94168 4.99160 5.00937 5.08063 5.09282 5.14134 5.16884 5.27288 5.29711 5.34458 5.38962 5.53382 5.60497 5.63497 5.66730 5.78561 5.88694 6.33336 6.37244 6.56916 7.06218 7.20511 7.41530 8.12651 8.38151 9.36880 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007757 B = 0.003892 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3608.945846 B = 7192.973678 C =10354.432897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.505 3.495 3 O -0.576 6.576 4 N -0.666 5.666 5 C 0.124 3.876 6 C -0.097 4.097 7 C -0.109 4.109 8 C -0.048 4.048 9 C -0.111 4.111 10 C -0.133 4.133 11 C 0.552 3.448 12 O -0.564 6.564 13 N -0.706 5.706 14 C 0.122 3.878 15 C 0.173 3.827 16 H 0.059 0.941 17 N -0.728 5.728 18 C -0.212 4.212 19 H 0.081 0.919 20 C -0.070 4.070 21 N -0.967 5.967 22 Si 0.957 3.043 23 H -0.266 1.266 24 H -0.295 1.295 25 H -0.306 1.306 26 C -0.106 4.106 27 C -0.141 4.141 28 C -0.135 4.135 29 C -0.106 4.106 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.427 0.573 34 H 0.136 0.864 35 H 0.159 0.841 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.408 0.592 40 H 0.085 0.915 41 H 0.049 0.951 42 H 0.371 0.629 43 H 0.246 0.754 44 H 0.048 0.952 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.049 0.951 49 H 0.049 0.951 50 H 0.047 0.953 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 1.968 15.969 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.296 3.704 3 O -0.455 6.455 4 N -0.313 5.313 5 C 0.029 3.971 6 C -0.118 4.118 7 C -0.127 4.127 8 C -0.050 4.050 9 C -0.167 4.167 10 C -0.137 4.137 11 C 0.341 3.659 12 O -0.446 6.446 13 N -0.357 5.357 14 C -0.002 4.002 15 C 0.064 3.936 16 H 0.077 0.923 17 N -0.368 5.368 18 C -0.344 4.344 19 H 0.098 0.902 20 C -0.262 4.262 21 N -0.619 5.619 22 Si 0.788 3.212 23 H -0.190 1.190 24 H -0.223 1.223 25 H -0.235 1.235 26 C -0.128 4.128 27 C -0.199 4.199 28 C -0.192 4.192 29 C -0.127 4.127 30 H 0.139 0.861 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.266 0.734 34 H 0.154 0.846 35 H 0.177 0.823 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.245 0.755 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.203 0.797 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.067 0.933 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.089 2.584 15.985 16.229 hybrid contribution -1.584 -0.343 -1.252 2.048 sum -0.495 2.241 14.732 14.910 Atomic orbital electron populations 1.21968 0.86923 1.06706 1.06766 1.21875 0.92675 0.82277 0.73529 1.90717 1.71895 1.32737 1.50106 1.43648 1.04325 1.10971 1.72344 1.17671 0.84082 0.97691 0.97609 1.21387 0.95292 0.98127 0.96956 1.21167 0.92735 0.98548 1.00283 1.20227 0.97629 0.92824 0.94304 1.20961 0.89463 1.04077 1.02170 1.19616 0.92991 0.98634 1.02424 1.18450 0.87288 0.81356 0.78825 1.90671 1.14521 1.76557 1.62815 1.45916 1.11379 1.26598 1.51802 1.21667 0.93802 0.89156 0.95575 1.20684 0.89513 0.91511 0.91887 0.92343 1.42610 1.15372 1.21562 1.57206 1.19510 0.92042 1.01097 1.21742 0.90151 1.25332 1.01592 0.97605 1.01681 1.69825 1.36873 1.16336 1.38854 0.85313 0.81128 0.78072 0.76708 1.19006 1.22291 1.23463 1.21627 0.96418 0.96741 0.98019 1.21853 0.98411 1.00188 0.99407 1.21734 0.99266 0.97872 1.00331 1.21146 0.92700 1.00284 0.98532 0.86102 0.88497 0.87490 0.73370 0.84587 0.82348 0.91703 0.89889 0.90423 0.75486 0.89710 0.93279 0.79700 0.94547 0.93300 0.92127 0.92170 0.92291 0.93192 0.93149 0.93344 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 10.32 71.24 0.74 -1.26 16 2 C 0.51 11.25 7.67 87.66 0.67 11.93 16 3 O -0.58 -17.87 14.85 -3.06 -0.05 -17.91 16 4 N -0.67 -14.10 5.34 -303.60 -1.62 -15.72 16 5 C 0.12 3.26 6.25 38.11 0.24 3.50 16 6 C -0.10 -2.50 8.65 22.44 0.19 -2.31 16 7 C -0.11 -2.59 9.65 22.21 0.21 -2.38 16 8 C -0.05 -1.32 5.91 -19.59 -0.12 -1.44 16 9 C -0.11 -2.79 8.71 71.23 0.62 -2.17 16 10 C -0.13 -4.08 5.87 -20.10 -0.12 -4.20 16 11 C 0.55 18.85 7.70 86.79 0.67 19.52 16 12 O -0.56 -21.20 13.35 -3.87 -0.05 -21.25 16 13 N -0.71 -23.31 5.34 -465.95 -2.49 -25.80 16 14 C 0.12 3.98 4.73 86.38 0.41 4.39 16 15 C 0.17 5.96 2.18 44.99 0.10 6.06 16 16 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 17 N -0.73 -31.91 4.45 -322.95 -1.44 -33.34 16 18 C -0.21 -10.22 7.55 84.03 0.63 -9.58 16 19 H 0.08 3.72 7.38 -2.91 -0.02 3.70 16 20 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 21 N -0.97 -55.38 13.06 21.65 0.28 -55.09 16 22 Si 0.96 42.73 29.55 68.60 2.03 44.76 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.30 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.31 -14.30 7.11 99.48 0.71 -13.59 16 26 C -0.11 -3.37 2.69 -10.79 -0.03 -3.40 16 27 C -0.14 -3.45 8.84 71.98 0.64 -2.81 16 28 C -0.13 -4.49 8.26 71.98 0.59 -3.90 16 29 C -0.11 -3.00 9.44 22.66 0.21 -2.79 16 30 H 0.12 0.77 8.14 -2.39 -0.02 0.76 16 31 H 0.10 1.19 8.12 -2.39 -0.02 1.17 16 32 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.43 6.49 8.82 -92.71 -0.82 5.68 16 34 H 0.14 3.46 6.49 -2.91 -0.02 3.44 16 35 H 0.16 2.78 8.05 -2.91 -0.02 2.75 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.56 8.04 -2.39 -0.02 1.54 16 38 H 0.08 2.26 5.87 -2.39 -0.01 2.24 16 39 H 0.41 13.50 6.21 -92.71 -0.58 12.92 16 40 H 0.08 2.49 6.71 -2.38 -0.02 2.47 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.37 18.46 7.80 -92.71 -0.72 17.74 16 43 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.06 1.37 6.54 -2.38 -0.02 1.35 16 48 H 0.05 2.04 5.99 -2.39 -0.01 2.02 16 49 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.13 3.78 6.45 -2.91 -0.02 3.76 16 Total: -1.00 -67.96 409.33 1.66 -66.30 By element: Atomic # 1 Polarization: 53.23 SS G_CDS: -1.14 Total: 52.09 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 6.13 Total: 5.98 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -5.26 Total: -129.95 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.10 Total: -39.17 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -67.96 1.66 -66.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482574718.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.783 kcal (2) G-P(sol) polarization free energy of solvation -67.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds