Wall clock time and date at job start Wed Apr 1 2020 04:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38250 * 119.99992 * 2 1 4 4 C 1.38210 * 120.00077 * 180.25701 * 3 2 1 5 5 C 1.38262 * 119.99876 * 359.52552 * 4 3 2 6 6 C 1.38210 * 119.99712 * 0.40457 * 5 4 3 7 7 C 1.38211 * 119.99771 * 179.97438 * 2 1 3 8 8 C 1.50701 * 120.00187 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.46983 * 5.82877 * 8 7 2 10 10 C 1.52998 * 109.47130 * 125.83391 * 8 7 2 11 11 C 1.50706 * 109.46988 * 245.83211 * 8 7 2 12 12 O 1.21274 * 119.99755 * 359.97438 * 11 8 7 13 13 N 1.34773 * 119.99918 * 180.02562 * 11 8 7 14 14 C 1.46494 * 119.99929 * 179.97438 * 13 11 8 15 15 H 1.08999 * 109.47603 * 34.99731 * 14 13 11 16 16 C 1.53002 * 109.47345 * 274.99591 * 14 13 11 17 17 C 1.53008 * 109.47195 * 154.99677 * 14 13 11 18 18 N 1.46901 * 109.46996 * 304.99738 * 17 14 13 19 19 C 1.46899 * 111.00006 * 180.02562 * 18 17 14 20 20 C 1.50700 * 109.47064 * 180.02562 * 19 18 17 21 21 O 1.21293 * 120.00262 * 0.02562 * 20 19 18 22 22 N 1.34773 * 120.00132 * 179.97438 * 20 19 18 23 23 C 1.37092 * 120.00321 * 180.02562 * 22 20 19 24 24 H 1.08004 * 120.00260 * 0.02562 * 23 22 20 25 25 C 1.38957 * 120.00275 * 180.02562 * 23 22 20 26 26 N 1.31411 * 119.99648 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00077 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47169 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.47015 * 119.99920 * 27 25 23 30 30 H 1.48501 * 109.47162 * 239.99954 * 27 25 23 31 31 H 1.09000 * 109.46966 * 95.72794 * 1 2 3 32 32 H 1.09000 * 109.47447 * 215.72949 * 1 2 3 33 33 H 1.09002 * 109.47004 * 335.72982 * 1 2 3 34 34 H 1.08003 * 120.00110 * 359.97412 * 3 2 1 35 35 H 1.07999 * 120.00506 * 179.72208 * 4 3 2 36 36 H 1.08004 * 120.00095 * 180.23484 * 5 4 3 37 37 H 1.07998 * 119.99797 * 179.82645 * 6 5 4 38 38 H 1.09007 * 109.46761 * 299.99692 * 10 8 7 39 39 H 1.08996 * 109.47607 * 59.99868 * 10 8 7 40 40 H 1.09000 * 109.46943 * 180.02562 * 10 8 7 41 41 H 0.96998 * 120.00246 * 359.97438 * 13 11 8 42 42 H 1.08993 * 109.47495 * 180.02562 * 16 14 13 43 43 H 1.09002 * 109.46510 * 300.00224 * 16 14 13 44 44 H 1.09003 * 109.46697 * 59.99664 * 16 14 13 45 45 H 1.08995 * 109.47223 * 65.00053 * 17 14 13 46 46 H 1.09002 * 109.46939 * 185.00569 * 17 14 13 47 47 H 1.00904 * 111.00225 * 56.04459 * 18 17 14 48 48 H 1.08993 * 109.46832 * 300.00028 * 19 18 17 49 49 H 1.08995 * 109.46963 * 60.00109 * 19 18 17 50 50 H 0.97005 * 120.00073 * 0.02562 * 22 20 19 51 51 H 0.96999 * 119.99467 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0054 5 6 4.2717 -0.0001 -0.0008 6 6 3.5806 -1.1970 0.0006 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.3775 -2.3056 -0.1024 10 6 1.9204 -3.3668 -1.1673 11 6 1.6977 -3.2271 1.2984 12 8 2.4193 -2.7329 2.1386 13 7 1.1230 -4.4251 1.5239 14 6 1.3695 -5.1301 2.7842 15 1 1.4613 -4.4060 3.5937 16 6 2.6646 -5.9370 2.6724 17 6 0.2028 -6.0762 3.0760 18 7 -1.0560 -5.3191 3.0649 19 6 -2.2007 -6.1969 3.3427 20 6 -3.4714 -5.3870 3.3224 21 8 -3.4278 -4.1958 3.0982 22 7 -4.6563 -5.9864 3.5524 23 6 -5.8123 -5.2497 3.5335 24 1 -5.7736 -4.1890 3.3338 25 6 -7.0340 -5.8677 3.7712 26 7 -7.0813 -7.1584 4.0136 27 14 -8.6091 -4.8637 3.7461 28 1 -8.2868 -3.4444 3.4514 29 1 -9.5167 -5.3929 2.6965 30 1 -9.2760 -4.9559 5.0697 31 1 -0.3633 -0.1026 -1.0225 32 1 -0.3634 -0.8342 0.6001 33 1 -0.3633 0.9369 0.4224 34 1 1.6583 2.1326 -0.0004 35 1 4.1204 2.1326 -0.0099 36 1 5.3518 -0.0001 -0.0012 37 1 4.1206 -2.1323 0.0014 38 1 1.7373 -2.8423 -2.1053 39 1 2.9875 -3.5632 -1.0633 40 1 1.3751 -4.3105 -1.1667 41 1 0.5461 -4.8205 0.8518 42 1 2.8478 -6.4619 3.6099 43 1 2.5727 -6.6611 1.8629 44 1 3.4957 -5.2630 2.4644 45 1 0.1660 -6.8537 2.3131 46 1 0.3427 -6.5341 4.0552 47 1 -1.1774 -4.8321 2.1896 48 1 -2.2544 -6.9755 2.5819 49 1 -2.0772 -6.6554 4.3237 50 1 -4.6913 -6.9392 3.7314 51 1 -7.9341 -7.5898 4.1792 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483195719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:49 Heat of formation + Delta-G solvation = -59.627448 kcal Electronic energy + Delta-G solvation = -30248.450413 eV Core-core repulsion = 26147.017993 eV Total energy + Delta-G solvation = -4101.432420 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.60419 -39.14003 -38.30321 -36.71914 -34.49705 -34.26551 -33.62937 -32.76963 -31.28799 -31.06670 -29.42927 -27.62181 -26.93186 -25.21807 -24.93824 -23.35082 -22.63033 -21.55012 -20.73550 -20.03485 -19.25769 -17.93046 -17.33167 -16.92967 -16.21140 -16.08977 -15.70175 -15.35100 -15.14859 -14.74081 -14.53635 -14.36961 -14.18979 -13.97268 -13.76374 -13.65373 -13.50950 -13.17642 -13.09353 -12.79070 -12.66226 -12.56989 -12.42307 -12.27686 -11.98441 -11.93580 -11.80312 -11.69046 -11.63377 -11.48351 -11.10663 -11.04021 -10.99485 -10.82616 -10.36133 -10.24705 -9.76089 -9.54393 -9.14625 -8.85988 -8.66152 -8.49638 -8.11274 -7.98599 -6.44245 -3.84966 1.23327 1.33630 2.63825 3.07776 3.14600 3.25458 3.32684 3.70657 3.87674 4.03422 4.26306 4.35640 4.53255 4.74442 4.80353 4.84522 4.90846 4.97575 4.99729 5.05105 5.16641 5.19896 5.20309 5.25580 5.32253 5.40314 5.41560 5.50015 5.54938 5.56196 5.61151 5.64423 5.74107 5.75482 5.79968 5.91598 5.94882 5.98075 6.07281 6.08637 6.23234 6.38457 6.41900 6.45193 6.55491 6.92159 7.12655 7.42409 7.53202 7.57674 8.03952 8.20697 8.58547 9.15596 9.51619 10.02891 10.73527 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012153 B = 0.002242 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.484985 B =12485.927311 C =14251.719103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.074 4.074 3 C -0.123 4.123 4 C -0.118 4.118 5 C -0.130 4.130 6 C -0.085 4.085 7 C -0.063 4.063 8 C -0.080 4.080 9 H 0.112 0.888 10 C -0.139 4.139 11 C 0.524 3.476 12 O -0.529 6.529 13 N -0.723 5.723 14 C 0.144 3.856 15 H 0.097 0.903 16 C -0.160 4.160 17 C 0.051 3.949 18 N -0.667 5.667 19 C 0.050 3.950 20 C 0.440 3.560 21 O -0.582 6.582 22 N -0.564 5.564 23 C -0.298 4.298 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.281 1.281 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.396 0.604 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.032 0.968 46 H 0.087 0.913 47 H 0.347 0.653 48 H 0.043 0.957 49 H 0.087 0.913 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.086 4.723 -10.846 24.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.074 4.074 3 C -0.141 4.141 4 C -0.136 4.136 5 C -0.148 4.148 6 C -0.103 4.103 7 C -0.064 4.064 8 C -0.101 4.101 9 H 0.130 0.870 10 C -0.197 4.197 11 C 0.310 3.690 12 O -0.404 6.404 13 N -0.375 5.375 14 C 0.040 3.960 15 H 0.115 0.885 16 C -0.219 4.219 17 C -0.079 4.079 18 N -0.300 5.300 19 C -0.083 4.083 20 C 0.225 3.775 21 O -0.466 6.466 22 N -0.200 5.200 23 C -0.428 4.428 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.207 1.207 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.230 0.770 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.050 0.950 46 H 0.105 0.895 47 H 0.167 0.833 48 H 0.061 0.939 49 H 0.105 0.895 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 21.520 5.970 -9.676 24.338 hybrid contribution -1.251 -0.966 -0.886 1.812 sum 20.269 5.003 -10.562 23.397 Atomic orbital electron populations 1.20898 0.91075 1.03462 1.02432 1.19778 0.96072 0.92554 0.99017 1.20974 0.94254 0.97285 1.01613 1.21093 0.94311 0.97913 1.00263 1.21048 0.99642 0.92517 1.01565 1.20838 0.93420 0.97915 0.98169 1.19103 0.93476 0.92670 1.01112 1.20418 1.02477 0.93391 0.93850 0.87027 1.21787 1.01883 0.99058 0.96948 1.20377 0.79639 0.80626 0.88393 1.90713 1.37090 1.66233 1.46392 1.46006 1.50896 1.20655 1.19936 1.21022 0.93612 0.94383 0.86999 0.88490 1.22140 0.97510 1.00075 1.02197 1.22305 0.89443 0.94400 1.01793 1.60001 1.00007 1.28548 1.41420 1.21692 0.90712 0.94249 1.01614 1.19799 0.84439 0.88565 0.84688 1.90529 1.86532 1.15322 1.54258 1.41870 1.05076 1.11143 1.61929 1.19750 0.83154 0.94657 1.45241 0.87872 1.25271 0.99563 0.95957 0.97206 1.69620 1.27110 1.09147 1.48414 0.85801 0.80941 0.79842 0.77777 1.19200 1.20767 1.20716 0.90961 0.90892 0.91295 0.86154 0.86344 0.86368 0.86562 0.91170 0.91936 0.91731 0.76964 0.91460 0.92598 0.91970 0.95023 0.89513 0.83299 0.93878 0.89469 0.77470 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.14 36.01 0.33 -0.90 16 2 C -0.07 -0.84 5.88 -104.62 -0.62 -1.46 16 3 C -0.12 -1.29 9.68 -39.59 -0.38 -1.68 16 4 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 5 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 6 C -0.09 -0.96 8.24 -39.58 -0.33 -1.28 16 7 C -0.06 -0.73 4.31 -104.62 -0.45 -1.18 16 8 C -0.08 -0.81 2.63 -92.92 -0.24 -1.06 16 9 H 0.11 1.07 5.72 -51.93 -0.30 0.77 16 10 C -0.14 -1.03 8.84 37.16 0.33 -0.70 16 11 C 0.52 6.52 7.02 -10.98 -0.08 6.45 16 12 O -0.53 -8.59 15.07 5.56 0.08 -8.50 16 13 N -0.72 -7.66 4.25 -53.80 -0.23 -7.89 16 14 C 0.14 1.61 2.88 -67.93 -0.20 1.42 16 15 H 0.10 1.37 7.58 -51.93 -0.39 0.97 16 16 C -0.16 -1.47 9.48 37.16 0.35 -1.11 16 17 C 0.05 0.57 5.30 -3.82 -0.02 0.55 16 18 N -0.67 -10.33 6.12 -115.06 -0.70 -11.03 16 19 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 20 C 0.44 10.21 7.82 -10.99 -0.09 10.12 16 21 O -0.58 -15.64 15.78 5.55 0.09 -15.55 16 22 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 23 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 24 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 25 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -24.31 13.05 55.50 0.72 -23.58 16 27 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 30 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.81 6.54 -51.93 -0.34 0.47 16 33 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 34 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.12 1.21 7.24 -52.49 -0.38 0.83 16 38 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.06 0.46 7.09 -51.93 -0.37 0.10 16 40 H 0.06 0.39 7.56 -51.93 -0.39 -0.01 16 41 H 0.40 3.41 7.57 -40.82 -0.31 3.10 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.35 5.46 7.28 -39.29 -0.29 5.17 16 48 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 50 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 51 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 418.53 15.07 6.31 6.31 Total: -1.00 -34.02 418.53 -9.36 -43.38 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -8.09 Total: 16.37 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.46 Total: -1.23 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.27 Total: -56.66 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: 0.17 Total: -24.05 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.02 -9.36 -43.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483195719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.247 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds