Wall clock time and date at job start Wed Apr 1 2020 04:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21295 * 119.99899 * 2 1 4 4 N 1.34777 * 120.00082 * 180.02562 * 2 1 3 5 5 C 1.39954 * 119.99891 * 184.86639 * 4 2 1 6 6 C 1.38991 * 120.00411 * 324.39410 * 5 4 2 7 7 C 1.38210 * 120.22107 * 180.27439 * 6 5 4 8 8 C 1.38022 * 120.22731 * 359.44230 * 7 6 5 9 9 C 1.50696 * 120.00640 * 180.25720 * 8 7 6 10 10 C 1.39586 * 119.98951 * 0.53257 * 8 7 6 11 11 C 1.47856 * 120.10520 * 179.72155 * 10 8 7 12 12 O 1.21547 * 120.00649 * 311.33548 * 11 10 8 13 13 N 1.34780 * 119.99678 * 131.33681 * 11 10 8 14 14 C 1.46495 * 120.00063 * 3.97923 * 13 11 10 15 15 C 1.46506 * 119.99955 * 183.98048 * 13 11 10 16 16 C 1.52998 * 109.46898 * 89.99877 * 15 13 11 17 17 C 1.53002 * 109.47202 * 179.97438 * 16 15 13 18 18 N 1.46496 * 109.47278 * 179.97438 * 17 16 15 19 19 C 1.46499 * 119.99863 * 90.00614 * 18 17 16 20 20 C 1.36940 * 120.00159 * 270.00348 * 18 17 16 21 21 H 1.07997 * 119.99944 * 24.21856 * 20 18 17 22 22 C 1.38816 * 119.99644 * 204.22137 * 20 18 17 23 23 N 1.31614 * 119.99929 * 9.73949 * 22 20 18 24 24 Si 1.86801 * 119.99619 * 189.73786 * 22 20 18 25 25 H 1.48498 * 109.47180 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47155 * 120.00273 * 24 22 20 27 27 H 1.48504 * 109.46945 * 240.00346 * 24 22 20 28 28 C 1.38604 * 119.99502 * 144.36578 * 5 4 2 29 29 H 1.09002 * 109.47649 * 269.99749 * 1 2 3 30 30 H 1.09003 * 109.47311 * 29.99583 * 1 2 3 31 31 H 1.09000 * 109.47465 * 149.99396 * 1 2 3 32 32 H 0.96997 * 119.99634 * 4.87813 * 4 2 1 33 33 H 1.07998 * 119.88385 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.88343 * 179.70211 * 7 6 5 35 35 H 1.09003 * 109.46456 * 272.73589 * 9 8 7 36 36 H 1.09001 * 109.47273 * 32.73023 * 9 8 7 37 37 H 1.09002 * 109.47376 * 152.73497 * 9 8 7 38 38 H 1.08998 * 109.47458 * 85.86846 * 14 13 11 39 39 H 1.09003 * 109.47293 * 205.86844 * 14 13 11 40 40 H 1.09005 * 109.47302 * 325.87119 * 14 13 11 41 41 H 1.08998 * 109.46613 * 209.99371 * 15 13 11 42 42 H 1.08994 * 109.46945 * 330.00070 * 15 13 11 43 43 H 1.09000 * 109.47330 * 300.00130 * 16 15 13 44 44 H 1.09007 * 109.47473 * 60.00296 * 16 15 13 45 45 H 1.09000 * 109.47362 * 300.00451 * 17 16 15 46 46 H 1.09007 * 109.46387 * 59.99971 * 17 16 15 47 47 H 1.08996 * 109.47555 * 93.78776 * 19 18 17 48 48 H 1.09002 * 109.47356 * 213.79089 * 19 18 17 49 49 H 1.09008 * 109.46943 * 333.78793 * 19 18 17 50 50 H 0.97011 * 119.99401 * 179.97438 * 23 22 20 51 51 H 1.08000 * 120.11101 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5766 -1.1694 0.1023 6 6 4.3197 -0.1627 -0.5029 7 6 5.6986 -0.1636 -0.4090 8 6 6.3464 -1.1577 0.2960 9 6 7.8497 -1.1506 0.4001 10 6 5.6091 -2.1729 0.9079 11 6 6.3008 -3.2425 1.6586 12 8 7.2459 -3.8217 1.1598 13 7 5.8834 -3.5753 2.8962 14 6 4.6918 -2.9391 3.4631 15 6 6.6213 -4.5734 3.6745 16 6 7.7016 -3.8763 4.5039 17 6 8.4719 -4.9185 5.3172 18 7 9.5067 -4.2512 6.1110 19 6 9.2015 -3.7795 7.4640 20 6 10.7591 -4.0684 5.5883 21 1 10.8986 -4.0402 4.5178 22 6 11.8493 -3.9193 6.4346 23 7 11.7163 -4.1431 7.7248 24 14 13.5051 -3.4012 5.7422 25 1 13.3905 -3.2127 4.2737 26 1 13.9281 -2.1252 6.3730 27 1 14.5129 -4.4534 6.0295 28 6 4.2178 -2.1752 0.8082 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 1.6984 -2.0056 -0.0723 33 1 3.8181 0.6201 -1.0525 34 1 6.2709 0.6186 -0.8855 35 1 8.2755 -1.6737 -0.4562 36 1 8.2083 -0.1213 0.4121 37 1 8.1527 -1.6518 1.3194 38 1 3.8029 -3.4837 3.1448 39 1 4.7557 -2.9521 4.5511 40 1 4.6301 -1.9079 3.1151 41 1 5.9339 -5.0965 4.3392 42 1 7.0881 -5.2891 2.9979 43 1 8.3890 -3.3531 3.8392 44 1 7.2348 -3.1605 5.1806 45 1 7.7843 -5.4415 5.9819 46 1 8.9386 -5.6347 4.6408 47 1 9.4809 -4.5453 8.1875 48 1 9.7626 -2.8670 7.6659 49 1 8.1339 -3.5750 7.5454 50 1 12.4784 -4.0393 8.3161 51 1 3.6421 -2.9578 1.2799 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484769817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:23 Heat of formation + Delta-G solvation = -17.945841 kcal Electronic energy + Delta-G solvation = -30476.272382 eV Core-core repulsion = 26376.647412 eV Total energy + Delta-G solvation = -4099.624970 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.08862 -40.10357 -38.34160 -36.30738 -35.45110 -35.23528 -32.63112 -32.18193 -31.35706 -30.06478 -29.90437 -27.09688 -26.63754 -25.85289 -25.36255 -23.71697 -22.33434 -21.99986 -21.03919 -20.17038 -19.43960 -17.96612 -17.61804 -16.71678 -16.43619 -16.12279 -16.06129 -15.68296 -15.46825 -14.79548 -14.69353 -14.43652 -14.13601 -13.93463 -13.76390 -13.63091 -13.23263 -13.18666 -13.14265 -12.84998 -12.82466 -12.58579 -12.47677 -12.44561 -12.05659 -11.86252 -11.66795 -11.50466 -11.23989 -10.90940 -10.78260 -10.67624 -10.58308 -10.38807 -10.32901 -10.09925 -9.82576 -9.77424 -9.68123 -9.13644 -8.66885 -8.44250 -8.33930 -6.63898 -5.65179 -3.12479 0.80567 0.95537 2.09852 2.53101 2.73360 3.02704 3.42811 3.49814 3.53125 3.53299 4.20631 4.33718 4.52213 4.56876 4.63353 4.77069 4.82426 4.91687 5.02773 5.07251 5.13717 5.21023 5.31151 5.33215 5.46856 5.51486 5.53167 5.58331 5.62846 5.72087 5.82077 5.85124 5.89700 6.06326 6.10695 6.11534 6.18798 6.22193 6.36633 6.50608 6.64346 6.68619 6.80741 6.88023 6.89221 7.08093 7.37418 7.45660 7.62170 7.79255 7.89514 8.17532 8.49088 9.32669 9.95540 10.44716 11.40013 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.002192 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.859899 B =12771.137268 C =13518.462022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.510 3.490 3 O -0.526 6.526 4 N -0.673 5.673 5 C 0.124 3.876 6 C -0.097 4.097 7 C -0.109 4.109 8 C -0.042 4.042 9 C -0.118 4.118 10 C -0.109 4.109 11 C 0.559 3.441 12 O -0.522 6.522 13 N -0.608 5.608 14 C 0.077 3.923 15 C 0.116 3.884 16 C -0.151 4.151 17 C 0.156 3.844 18 N -0.604 5.604 19 C 0.165 3.835 20 C -0.249 4.249 21 H 0.068 0.932 22 C -0.001 4.001 23 N -0.911 5.911 24 Si 0.903 3.097 25 H -0.277 1.277 26 H -0.290 1.290 27 H -0.290 1.290 28 C -0.111 4.111 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.411 0.589 33 H 0.141 0.859 34 H 0.133 0.867 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.034 0.966 46 H 0.047 0.953 47 H 0.028 0.972 48 H 0.042 0.958 49 H -0.006 1.006 50 H 0.251 0.749 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.190 5.589 -15.856 31.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.298 3.702 3 O -0.402 6.402 4 N -0.319 5.319 5 C 0.031 3.969 6 C -0.117 4.117 7 C -0.128 4.128 8 C -0.043 4.043 9 C -0.175 4.175 10 C -0.112 4.112 11 C 0.346 3.654 12 O -0.399 6.399 13 N -0.341 5.341 14 C -0.067 4.067 15 C -0.007 4.007 16 C -0.192 4.192 17 C 0.028 3.972 18 N -0.326 5.326 19 C 0.020 3.980 20 C -0.378 4.378 21 H 0.086 0.914 22 C -0.199 4.199 23 N -0.557 5.557 24 Si 0.734 3.266 25 H -0.202 1.202 26 H -0.217 1.217 27 H -0.217 1.217 28 C -0.131 4.131 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.247 0.753 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.052 0.948 46 H 0.066 0.934 47 H 0.046 0.954 48 H 0.061 0.939 49 H 0.012 0.988 50 H 0.061 0.939 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -25.190 6.052 -15.935 30.415 hybrid contribution 0.497 -0.065 -0.147 0.522 sum -24.693 5.987 -16.082 30.070 Atomic orbital electron populations 1.21891 0.90590 1.05288 1.05287 1.21034 0.90921 0.83105 0.75118 1.90752 1.70416 1.31277 1.47708 1.43586 1.05090 1.10011 1.73243 1.17525 0.82585 0.97633 0.99151 1.21372 0.93603 0.98498 0.98218 1.20932 0.93819 0.98618 0.99384 1.19991 0.96711 0.92870 0.94757 1.20878 0.90066 1.02449 1.04084 1.19590 0.92928 0.96896 1.01811 1.18254 0.83373 0.82563 0.81175 1.90815 1.27839 1.52985 1.68224 1.47863 1.28602 1.42215 1.15410 1.21931 0.86679 0.98059 1.00005 1.21640 0.94271 0.90452 0.94290 1.22619 0.97032 1.00731 0.98839 1.20624 0.90720 0.92503 0.93401 1.43882 1.08229 1.66661 1.13875 1.20766 0.92545 0.98764 0.85882 1.19255 0.83539 1.43497 0.91559 0.91438 1.25069 0.97767 1.01229 0.95813 1.70072 1.29680 1.53358 1.02599 0.86184 0.84180 0.77835 0.78430 1.20239 1.21702 1.21716 1.21046 0.93431 0.99567 0.99087 0.88323 0.88458 0.89878 0.75262 0.84172 0.84957 0.90194 0.91401 0.90729 0.92863 0.90578 0.90997 0.90821 0.89786 0.91836 0.92891 0.94759 0.93408 0.95384 0.93918 0.98777 0.93915 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.47 10.31 36.00 0.37 -0.10 16 2 C 0.51 3.66 7.78 -10.99 -0.09 3.57 16 3 O -0.53 -6.14 14.56 5.54 0.08 -6.06 16 4 N -0.67 -4.16 5.33 -9.89 -0.05 -4.21 16 5 C 0.12 1.16 6.28 -83.73 -0.53 0.64 16 6 C -0.10 -1.03 8.69 -39.31 -0.34 -1.37 16 7 C -0.11 -1.17 9.69 -39.67 -0.38 -1.56 16 8 C -0.04 -0.52 5.91 -104.20 -0.62 -1.14 16 9 C -0.12 -1.53 9.09 36.00 0.33 -1.20 16 10 C -0.11 -1.36 4.89 -104.99 -0.51 -1.88 16 11 C 0.56 8.36 6.32 -12.32 -0.08 8.28 16 12 O -0.52 -9.70 15.15 5.32 0.08 -9.62 16 13 N -0.61 -8.04 2.87 -182.69 -0.52 -8.56 16 14 C 0.08 0.73 9.06 59.84 0.54 1.27 16 15 C 0.12 1.67 5.42 -4.04 -0.02 1.65 16 16 C -0.15 -2.74 5.86 -26.73 -0.16 -2.90 16 17 C 0.16 3.27 5.65 -4.04 -0.02 3.25 16 18 N -0.60 -15.78 2.92 -181.11 -0.53 -16.31 16 19 C 0.17 4.20 8.96 59.85 0.54 4.73 16 20 C -0.25 -7.13 9.66 -15.06 -0.15 -7.28 16 21 H 0.07 1.93 7.85 -52.49 -0.41 1.52 16 22 C 0.00 -0.03 5.15 -17.43 -0.09 -0.12 16 23 N -0.91 -27.41 10.62 55.49 0.59 -26.82 16 24 Si 0.90 22.72 29.56 -169.99 -5.03 17.70 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 C -0.11 -1.07 7.69 -38.98 -0.30 -1.37 16 29 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 32 H 0.41 1.11 8.82 -40.82 -0.36 0.75 16 33 H 0.14 1.52 6.24 -52.49 -0.33 1.20 16 34 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.07 1.16 6.56 -51.93 -0.34 0.82 16 38 H 0.05 0.37 7.10 -51.93 -0.37 0.00 16 39 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 40 H 0.07 0.69 6.23 -51.93 -0.32 0.37 16 41 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 42 H 0.08 1.33 7.37 -51.93 -0.38 0.94 16 43 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.03 0.65 8.07 -51.93 -0.42 0.24 16 46 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 47 H 0.03 0.76 7.41 -51.93 -0.38 0.38 16 48 H 0.04 1.17 7.24 -51.93 -0.38 0.79 16 49 H -0.01 -0.14 8.04 -51.92 -0.42 -0.56 16 50 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 51 H 0.13 0.97 6.31 -52.49 -0.33 0.64 16 LS Contribution 413.46 15.07 6.23 6.23 Total: -1.00 -36.85 413.46 -8.87 -45.72 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -8.21 Total: -2.55 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -1.50 Total: 4.49 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.52 Total: -55.90 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.16 Total: -15.68 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.85 -8.87 -45.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484769817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.771 kcal (2) G-P(sol) polarization free energy of solvation -36.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds