Wall clock time and date at job start Wed Apr 1 2020 04:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21295 * 119.99899 * 2 1 4 4 N 1.34777 * 120.00082 * 180.02562 * 2 1 3 5 5 C 1.39954 * 119.99891 * 184.86639 * 4 2 1 6 6 C 1.38991 * 120.00411 * 324.39410 * 5 4 2 7 7 C 1.38210 * 120.22107 * 180.27439 * 6 5 4 8 8 C 1.38022 * 120.22731 * 359.44230 * 7 6 5 9 9 C 1.50696 * 120.00640 * 180.25720 * 8 7 6 10 10 C 1.39586 * 119.98951 * 0.53257 * 8 7 6 11 11 C 1.47856 * 120.10520 * 179.72155 * 10 8 7 12 12 O 1.21547 * 120.00649 * 311.33548 * 11 10 8 13 13 N 1.34780 * 119.99678 * 131.33681 * 11 10 8 14 14 C 1.46495 * 120.00063 * 3.97923 * 13 11 10 15 15 C 1.46506 * 119.99955 * 183.98048 * 13 11 10 16 16 C 1.52998 * 109.46898 * 89.99877 * 15 13 11 17 17 C 1.53002 * 109.47202 * 179.97438 * 16 15 13 18 18 N 1.46496 * 109.47278 * 179.97438 * 17 16 15 19 19 C 1.46499 * 119.99863 * 90.00614 * 18 17 16 20 20 C 1.36940 * 120.00159 * 270.00348 * 18 17 16 21 21 H 1.07997 * 119.99944 * 24.21856 * 20 18 17 22 22 C 1.38816 * 119.99644 * 204.22137 * 20 18 17 23 23 N 1.31614 * 119.99929 * 9.73949 * 22 20 18 24 24 Si 1.86801 * 119.99619 * 189.73786 * 22 20 18 25 25 H 1.48498 * 109.47180 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47155 * 120.00273 * 24 22 20 27 27 H 1.48504 * 109.46945 * 240.00346 * 24 22 20 28 28 C 1.38604 * 119.99502 * 144.36578 * 5 4 2 29 29 H 1.09002 * 109.47649 * 269.99749 * 1 2 3 30 30 H 1.09003 * 109.47311 * 29.99583 * 1 2 3 31 31 H 1.09000 * 109.47465 * 149.99396 * 1 2 3 32 32 H 0.96997 * 119.99634 * 4.87813 * 4 2 1 33 33 H 1.07998 * 119.88385 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.88343 * 179.70211 * 7 6 5 35 35 H 1.09003 * 109.46456 * 272.73589 * 9 8 7 36 36 H 1.09001 * 109.47273 * 32.73023 * 9 8 7 37 37 H 1.09002 * 109.47376 * 152.73497 * 9 8 7 38 38 H 1.08998 * 109.47458 * 85.86846 * 14 13 11 39 39 H 1.09003 * 109.47293 * 205.86844 * 14 13 11 40 40 H 1.09005 * 109.47302 * 325.87119 * 14 13 11 41 41 H 1.08998 * 109.46613 * 209.99371 * 15 13 11 42 42 H 1.08994 * 109.46945 * 330.00070 * 15 13 11 43 43 H 1.09000 * 109.47330 * 300.00130 * 16 15 13 44 44 H 1.09007 * 109.47473 * 60.00296 * 16 15 13 45 45 H 1.09000 * 109.47362 * 300.00451 * 17 16 15 46 46 H 1.09007 * 109.46387 * 59.99971 * 17 16 15 47 47 H 1.08996 * 109.47555 * 93.78776 * 19 18 17 48 48 H 1.09002 * 109.47356 * 213.79089 * 19 18 17 49 49 H 1.09008 * 109.46943 * 333.78793 * 19 18 17 50 50 H 0.97011 * 119.99401 * 179.97438 * 23 22 20 51 51 H 1.08000 * 120.11101 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5766 -1.1694 0.1023 6 6 4.3197 -0.1627 -0.5029 7 6 5.6986 -0.1636 -0.4090 8 6 6.3464 -1.1577 0.2960 9 6 7.8497 -1.1506 0.4001 10 6 5.6091 -2.1729 0.9079 11 6 6.3008 -3.2425 1.6586 12 8 7.2459 -3.8217 1.1598 13 7 5.8834 -3.5753 2.8962 14 6 4.6918 -2.9391 3.4631 15 6 6.6213 -4.5734 3.6745 16 6 7.7016 -3.8763 4.5039 17 6 8.4719 -4.9185 5.3172 18 7 9.5067 -4.2512 6.1110 19 6 9.2015 -3.7795 7.4640 20 6 10.7591 -4.0684 5.5883 21 1 10.8986 -4.0402 4.5178 22 6 11.8493 -3.9193 6.4346 23 7 11.7163 -4.1431 7.7248 24 14 13.5051 -3.4012 5.7422 25 1 13.3905 -3.2127 4.2737 26 1 13.9281 -2.1252 6.3730 27 1 14.5129 -4.4534 6.0295 28 6 4.2178 -2.1752 0.8082 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 1.6984 -2.0056 -0.0723 33 1 3.8181 0.6201 -1.0525 34 1 6.2709 0.6186 -0.8855 35 1 8.2755 -1.6737 -0.4562 36 1 8.2083 -0.1213 0.4121 37 1 8.1527 -1.6518 1.3194 38 1 3.8029 -3.4837 3.1448 39 1 4.7557 -2.9521 4.5511 40 1 4.6301 -1.9079 3.1151 41 1 5.9339 -5.0965 4.3392 42 1 7.0881 -5.2891 2.9979 43 1 8.3890 -3.3531 3.8392 44 1 7.2348 -3.1605 5.1806 45 1 7.7843 -5.4415 5.9819 46 1 8.9386 -5.6347 4.6408 47 1 9.4809 -4.5453 8.1875 48 1 9.7626 -2.8670 7.6659 49 1 8.1339 -3.5750 7.5454 50 1 12.4784 -4.0393 8.3161 51 1 3.6421 -2.9578 1.2799 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484769817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:22 Heat of formation + Delta-G solvation = -41.869632 kcal Electronic energy + Delta-G solvation = -30477.309796 eV Core-core repulsion = 26376.647412 eV Total energy + Delta-G solvation = -4100.662383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.89671 -40.97811 -39.23688 -37.93054 -36.81577 -36.06972 -34.24650 -32.93038 -32.72592 -31.46335 -30.49641 -28.12982 -27.92982 -27.62080 -26.66068 -24.87135 -23.69650 -22.78264 -22.10391 -21.74587 -20.35063 -18.84003 -18.69649 -18.31617 -17.49746 -17.10289 -16.99120 -16.75746 -16.50576 -16.23898 -15.82937 -15.57185 -15.41048 -15.01499 -14.79987 -14.68937 -14.54099 -14.53288 -14.34622 -14.00885 -13.54066 -13.40398 -13.36153 -13.31074 -13.12285 -12.99903 -12.86577 -12.79406 -12.75580 -12.55489 -12.51296 -12.35238 -12.25631 -12.09672 -11.89366 -11.42646 -11.31107 -11.13482 -10.81645 -10.67760 -9.98922 -9.73123 -9.12364 -8.75019 -7.85558 -5.35357 -0.08977 0.16881 1.41413 1.42275 1.50098 1.53735 1.62899 1.92908 2.16862 2.47974 2.67246 3.27333 3.40299 3.69502 3.72679 3.86376 3.87335 4.03318 4.10468 4.23381 4.26023 4.35967 4.40532 4.52909 4.56271 4.58060 4.60959 4.66103 4.68222 4.69862 4.75141 4.80766 4.85551 4.88995 4.92682 4.96498 5.10480 5.14814 5.22648 5.26098 5.26340 5.36883 5.46401 5.48982 5.56780 5.61003 5.70716 5.87584 6.31668 6.32856 6.43359 7.07060 7.13327 7.14575 7.87150 8.29010 9.17340 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.002192 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.859899 B =12771.137268 C =13518.462022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.505 3.495 3 O -0.577 6.577 4 N -0.659 5.659 5 C 0.130 3.870 6 C -0.105 4.105 7 C -0.108 4.108 8 C -0.063 4.063 9 C -0.112 4.112 10 C -0.124 4.124 11 C 0.554 3.446 12 O -0.571 6.571 13 N -0.606 5.606 14 C 0.070 3.930 15 C 0.125 3.875 16 C -0.131 4.131 17 C 0.153 3.847 18 N -0.623 5.623 19 C 0.179 3.821 20 C -0.259 4.259 21 H 0.058 0.942 22 C -0.054 4.054 23 N -0.938 5.938 24 Si 0.966 3.034 25 H -0.273 1.273 26 H -0.287 1.287 27 H -0.287 1.287 28 C -0.097 4.097 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.431 0.569 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.113 0.887 42 H 0.067 0.933 43 H 0.022 0.978 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.005 0.995 48 H 0.013 0.987 49 H 0.033 0.967 50 H 0.249 0.751 51 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.710 5.489 -16.342 34.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.296 3.704 3 O -0.455 6.455 4 N -0.307 5.307 5 C 0.036 3.964 6 C -0.125 4.125 7 C -0.126 4.126 8 C -0.065 4.065 9 C -0.169 4.169 10 C -0.128 4.128 11 C 0.343 3.657 12 O -0.451 6.451 13 N -0.337 5.337 14 C -0.072 4.072 15 C 0.002 3.998 16 C -0.172 4.172 17 C 0.027 3.973 18 N -0.347 5.347 19 C 0.034 3.966 20 C -0.390 4.390 21 H 0.076 0.924 22 C -0.249 4.249 23 N -0.585 5.585 24 Si 0.794 3.206 25 H -0.198 1.198 26 H -0.214 1.214 27 H -0.213 1.213 28 C -0.118 4.118 29 H 0.132 0.868 30 H 0.113 0.887 31 H 0.132 0.868 32 H 0.271 0.729 33 H 0.155 0.845 34 H 0.165 0.835 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.131 0.869 42 H 0.085 0.915 43 H 0.041 0.959 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.054 0.946 47 H 0.023 0.977 48 H 0.032 0.968 49 H 0.051 0.949 50 H 0.058 0.942 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -28.797 5.923 -16.427 33.678 hybrid contribution 1.472 -0.021 -0.019 1.472 sum -27.325 5.902 -16.447 32.435 Atomic orbital electron populations 1.21926 0.86760 1.06768 1.06648 1.21905 0.92631 0.82297 0.73522 1.90738 1.71705 1.33085 1.50020 1.43572 1.03710 1.11046 1.72369 1.17598 0.84180 0.96714 0.97951 1.21486 0.93596 0.98931 0.98497 1.21048 0.94194 0.98429 0.98963 1.20020 0.96215 0.94021 0.96225 1.20774 0.91201 1.02854 1.02071 1.19528 0.94235 0.96450 1.02549 1.18691 0.82803 0.82505 0.81693 1.90782 1.30048 1.54736 1.69568 1.47928 1.29289 1.41790 1.14725 1.22220 0.86143 0.98254 1.00550 1.21461 0.94140 0.90121 0.94107 1.22306 0.97041 0.99738 0.98105 1.20801 0.90197 0.92912 0.93430 1.44155 1.08605 1.67447 1.14472 1.20527 0.94284 0.96587 0.85195 1.19438 0.85083 1.43147 0.91310 0.92385 1.25803 1.01049 1.01794 0.96226 1.70216 1.30397 1.54395 1.03490 0.85217 0.80109 0.77358 0.77900 1.19775 1.21399 1.21341 1.21174 0.92158 1.00007 0.98461 0.86810 0.88655 0.86755 0.72913 0.84471 0.83496 0.90739 0.89785 0.94074 0.89271 0.89578 0.91147 0.86938 0.91473 0.95908 0.92413 0.91900 0.94564 0.97660 0.96811 0.94867 0.94171 0.82178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.31 10.31 71.23 0.73 0.42 16 2 C 0.51 5.97 7.78 87.65 0.68 6.66 16 3 O -0.58 -12.81 14.56 -3.08 -0.04 -12.85 16 4 N -0.66 -6.05 5.33 -303.59 -1.62 -7.67 16 5 C 0.13 2.14 6.28 38.11 0.24 2.38 16 6 C -0.10 -2.12 8.69 22.44 0.20 -1.93 16 7 C -0.11 -2.29 9.69 22.21 0.22 -2.07 16 8 C -0.06 -1.60 5.91 -19.59 -0.12 -1.72 16 9 C -0.11 -3.09 9.09 71.23 0.65 -2.44 16 10 C -0.12 -3.05 4.89 -20.10 -0.10 -3.15 16 11 C 0.55 16.66 6.32 86.79 0.55 17.21 16 12 O -0.57 -22.25 15.15 -3.86 -0.06 -22.30 16 13 N -0.61 -15.13 2.87 -850.18 -2.44 -17.57 16 14 C 0.07 1.09 9.06 127.77 1.16 2.25 16 15 C 0.12 3.43 5.42 86.38 0.47 3.90 16 16 C -0.13 -4.72 5.86 30.59 0.18 -4.54 16 17 C 0.15 6.37 5.65 86.38 0.49 6.86 16 18 N -0.62 -32.89 2.92 -726.92 -2.12 -35.01 16 19 C 0.18 9.11 8.96 127.77 1.15 10.26 16 20 C -0.26 -15.22 9.66 84.03 0.81 -14.41 16 21 H 0.06 3.44 7.85 -2.91 -0.02 3.42 16 22 C -0.05 -3.18 5.15 84.86 0.44 -2.75 16 23 N -0.94 -57.46 10.62 21.65 0.23 -57.23 16 24 Si 0.97 47.66 29.56 68.60 2.03 49.69 16 25 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 26 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 27 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 28 C -0.10 -1.65 7.69 22.66 0.17 -1.47 16 29 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.11 -0.48 8.14 -2.39 -0.02 -0.49 16 32 H 0.43 0.51 8.82 -92.71 -0.82 -0.31 16 33 H 0.14 2.90 6.24 -2.91 -0.02 2.89 16 34 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 1.92 8.10 -2.39 -0.02 1.90 16 37 H 0.04 1.38 6.56 -2.39 -0.02 1.37 16 38 H 0.09 0.79 7.10 -2.39 -0.02 0.77 16 39 H 0.09 1.21 8.04 -2.39 -0.02 1.19 16 40 H 0.07 1.16 6.23 -2.38 -0.01 1.14 16 41 H 0.11 2.27 8.07 -2.39 -0.02 2.25 16 42 H 0.07 2.11 7.37 -2.39 -0.02 2.09 16 43 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.06 2.26 8.07 -2.39 -0.02 2.24 16 46 H 0.04 1.57 8.04 -2.38 -0.02 1.55 16 47 H 0.01 0.28 7.41 -2.39 -0.02 0.26 16 48 H 0.01 0.74 7.24 -2.39 -0.02 0.72 16 49 H 0.03 1.40 8.04 -2.38 -0.02 1.38 16 50 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 51 H 0.16 1.70 6.31 -2.91 -0.02 1.68 16 Total: -1.00 -84.69 413.46 3.99 -80.70 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.12 Total: 6.81 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 7.91 Total: 15.44 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -5.96 Total: -117.49 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.10 Total: -35.16 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -84.69 3.99 -80.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484769817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.829 kcal (2) G-P(sol) polarization free energy of solvation -84.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds