Wall clock time and date at job start Wed Apr 1 2020 04:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38378 * 119.92938 * 2 1 4 4 C 1.38335 * 120.29189 * 179.97438 * 3 2 1 5 5 C 1.37980 * 120.14758 * 0.02562 * 4 3 2 6 6 C 1.39556 * 119.85036 * 359.97438 * 5 4 3 7 7 C 1.47846 * 120.14365 * 180.02562 * 6 5 4 8 8 O 1.21556 * 119.99629 * 181.82232 * 7 6 5 9 9 N 1.34773 * 120.00252 * 1.81882 * 7 6 5 10 10 C 1.46502 * 120.00032 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46953 * 185.03987 * 10 9 7 12 12 H 1.09002 * 109.47391 * 296.26773 * 11 10 9 13 13 C 1.52995 * 109.47190 * 176.26552 * 11 10 9 14 14 N 1.46903 * 109.47024 * 56.26367 * 11 10 9 15 15 C 1.46899 * 110.99872 * 191.56289 * 14 11 10 16 16 C 1.46904 * 110.99882 * 67.60915 * 14 11 10 17 17 C 1.50699 * 109.46849 * 189.99821 * 16 14 11 18 18 O 1.21293 * 120.00085 * 0.02562 * 17 16 14 19 19 N 1.34783 * 119.99595 * 180.02562 * 17 16 14 20 20 C 1.37092 * 119.99693 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00189 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00264 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00593 * 180.02562 * 22 20 19 24 24 Si 1.86808 * 119.99402 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.46874 * 89.99894 * 24 22 20 26 26 H 1.48499 * 109.46958 * 209.99855 * 24 22 20 27 27 H 1.48493 * 109.47040 * 329.99738 * 24 22 20 28 28 C 1.37943 * 119.92231 * 179.97438 * 2 1 3 29 29 C 1.50695 * 120.07541 * 0.28072 * 28 2 1 30 30 H 1.09002 * 109.46982 * 270.00305 * 1 2 3 31 31 H 1.09001 * 109.47274 * 29.99946 * 1 2 3 32 32 H 1.08997 * 109.47401 * 150.00015 * 1 2 3 33 33 H 1.07997 * 119.85404 * 359.97438 * 3 2 1 34 34 H 1.07997 * 119.92958 * 179.97438 * 4 3 2 35 35 H 1.07993 * 120.07985 * 180.02562 * 5 4 3 36 36 H 0.97000 * 119.99769 * 0.02562 * 9 7 6 37 37 H 1.08996 * 109.47398 * 305.04100 * 10 9 7 38 38 H 1.09001 * 109.46822 * 65.04348 * 10 9 7 39 39 H 1.09006 * 109.46743 * 299.99738 * 13 11 10 40 40 H 1.09000 * 109.47102 * 60.00013 * 13 11 10 41 41 H 1.09001 * 109.47408 * 180.02562 * 13 11 10 42 42 H 1.09008 * 109.47178 * 64.73324 * 15 14 11 43 43 H 1.09000 * 109.46739 * 184.72620 * 15 14 11 44 44 H 1.09000 * 109.47419 * 304.73064 * 15 14 11 45 45 H 1.08999 * 109.46918 * 310.00366 * 16 14 11 46 46 H 1.08999 * 109.46714 * 70.00413 * 16 14 11 47 47 H 0.96991 * 119.99702 * 0.02562 * 19 17 16 48 48 H 0.97002 * 120.00060 * 179.97438 * 23 22 20 49 49 H 1.09007 * 109.46760 * 262.29089 * 29 28 2 50 50 H 1.09004 * 109.47115 * 22.28880 * 29 28 2 51 51 H 1.09003 * 109.47335 * 142.29439 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5807 1.2080 0.0005 5 6 4.2812 0.0192 0.0005 6 6 3.5911 -1.1937 0.0005 7 6 4.3351 -2.4713 0.0011 8 8 3.7318 -3.5260 -0.0324 9 7 5.6823 -2.4665 0.0387 10 6 6.4196 -3.7325 0.0387 11 6 7.9138 -3.4525 0.2116 12 1 8.2784 -2.8841 -0.6441 13 6 8.6735 -4.7772 0.3050 14 7 8.1277 -2.6776 1.4411 15 6 9.4996 -2.1561 1.5028 16 6 7.8160 -3.4811 2.6308 17 6 7.8077 -2.5933 3.8485 18 8 8.0383 -1.4078 3.7363 19 7 7.5441 -3.1168 5.0622 20 6 7.5371 -2.3093 6.1701 21 1 7.7424 -1.2537 6.0702 22 6 7.2647 -2.8487 7.4213 23 7 7.2575 -2.0747 8.4832 24 14 6.9089 -4.6745 7.5938 25 1 8.1793 -5.4062 7.8296 26 1 5.9912 -4.8936 8.7406 27 1 6.2732 -5.1747 6.3486 28 6 2.1951 -1.1956 0.0005 29 6 1.4416 -2.5006 -0.0053 30 1 -0.3633 0.0001 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5138 33 1 1.6539 2.1325 -0.0004 34 1 4.1136 2.1473 0.0001 35 1 5.3611 0.0273 0.0014 36 1 6.1638 -1.6249 0.0657 37 1 6.0695 -4.3569 0.8606 38 1 6.2538 -4.2495 -0.9065 39 1 8.3090 -5.3455 1.1608 40 1 8.5148 -5.3522 -0.6073 41 1 9.7380 -4.5777 0.4286 42 1 9.6541 -1.4431 0.6928 43 1 9.6564 -1.6583 2.4597 44 1 10.2063 -2.9797 1.4015 45 1 6.8358 -3.9426 2.5108 46 1 8.5709 -4.2578 2.7525 47 1 7.3600 -4.0649 5.1518 48 1 7.0670 -2.4513 9.3566 49 1 1.3750 -2.8862 1.0122 50 1 0.4380 -2.3390 -0.3990 51 1 1.9667 -3.2206 -0.6330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485379180.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:35 Heat of formation + Delta-G solvation = -31.591220 kcal Electronic energy + Delta-G solvation = -31158.020995 eV Core-core repulsion = 27057.804317 eV Total energy + Delta-G solvation = -4100.216678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.48099 -39.33599 -38.42390 -37.31805 -34.64655 -33.94026 -33.29120 -32.20656 -31.67140 -30.96588 -28.32817 -27.99318 -26.59203 -26.31007 -24.95119 -23.91787 -23.05091 -21.02864 -20.38636 -20.02313 -19.20325 -18.18808 -17.45493 -16.64417 -16.35345 -15.80076 -15.51897 -15.32581 -15.02018 -14.88680 -14.86015 -14.43820 -14.15156 -14.01927 -13.77954 -13.32748 -13.21971 -13.09510 -12.95552 -12.79789 -12.71107 -12.52682 -12.38112 -12.23662 -12.12517 -11.89739 -11.86065 -11.76234 -11.68751 -11.37729 -11.28477 -10.96518 -10.93039 -10.82779 -10.58388 -9.97271 -9.52884 -9.50497 -9.10355 -8.78631 -8.62979 -8.58075 -8.17796 -8.00205 -6.30751 -3.81881 0.83088 1.27650 2.89819 3.04248 3.07265 3.15793 3.21164 3.74006 3.80075 3.89662 4.11056 4.55681 4.63604 4.68173 4.77578 4.80650 4.91070 4.94616 5.05077 5.12832 5.19206 5.20369 5.37647 5.40172 5.40331 5.43922 5.52598 5.56066 5.63891 5.67890 5.72562 5.79339 5.81256 5.84492 5.86630 5.87590 5.93296 5.98967 6.05670 6.19725 6.27696 6.35243 6.42633 6.50696 6.62497 6.85016 7.10184 7.22728 7.58690 7.62191 8.14855 8.30630 8.60541 8.95640 9.43138 9.83789 10.82347 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008438 B = 0.003282 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.721527 B = 8528.536346 C =10045.665295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.103 4.103 3 C -0.092 4.092 4 C -0.131 4.131 5 C -0.080 4.080 6 C -0.135 4.135 7 C 0.558 3.442 8 O -0.542 6.542 9 N -0.708 5.708 10 C 0.129 3.871 11 C 0.064 3.936 12 H 0.090 0.910 13 C -0.186 4.186 14 N -0.511 5.511 15 C 0.020 3.980 16 C 0.038 3.962 17 C 0.454 3.546 18 O -0.560 6.560 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.877 3.123 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C -0.024 4.024 29 C -0.129 4.129 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.408 0.592 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.019 0.981 45 H 0.088 0.912 46 H 0.052 0.948 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.073 0.927 50 H 0.059 0.941 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 -1.086 -21.265 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.103 4.103 3 C -0.111 4.111 4 C -0.149 4.149 5 C -0.099 4.099 6 C -0.138 4.138 7 C 0.347 3.653 8 O -0.421 6.421 9 N -0.360 5.360 10 C 0.005 3.995 11 C -0.045 4.045 12 H 0.108 0.892 13 C -0.245 4.245 14 N -0.234 5.234 15 C -0.128 4.128 16 C -0.093 4.093 17 C 0.239 3.761 18 O -0.442 6.442 19 N -0.230 5.230 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.704 3.296 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.025 4.025 29 C -0.184 4.184 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.245 0.755 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.114 0.886 44 H 0.037 0.963 45 H 0.107 0.893 46 H 0.070 0.930 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.092 0.908 50 H 0.078 0.922 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.706 -0.607 -21.126 22.173 hybrid contribution 0.631 -1.642 0.572 1.850 sum -6.075 -2.249 -20.555 21.551 Atomic orbital electron populations 1.20857 0.90965 1.02817 1.02583 1.19742 0.96281 0.92384 1.01939 1.21201 0.94337 0.97471 0.98048 1.21057 0.94203 0.98107 1.01539 1.21333 0.99981 0.91757 0.96849 1.19748 0.93666 0.93064 1.07287 1.18244 0.82066 0.88796 0.76234 1.90675 1.67876 1.32882 1.50715 1.45714 1.05782 1.10250 1.74214 1.21410 0.90031 0.86168 1.01891 1.22044 0.94303 0.93959 0.94230 0.89220 1.22400 1.01153 0.98074 1.02856 1.61791 1.26267 1.35434 0.99932 1.22561 0.86691 0.98590 1.04925 1.21960 1.01625 0.95046 0.90712 1.19621 0.83971 0.88971 0.83495 1.90520 1.52546 1.15926 1.85197 1.42216 1.64085 1.09703 1.07033 1.19411 1.45490 0.95117 0.83220 0.86279 1.25022 0.97636 0.98210 0.95196 1.69616 1.48325 1.35321 0.98885 0.86704 0.79068 0.85244 0.78618 1.19655 1.20128 1.19461 1.19866 0.92047 0.95679 0.94901 1.21228 0.98898 0.94477 1.03842 0.91022 0.91649 0.90929 0.85785 0.85413 0.85393 0.75509 0.91137 0.91258 0.91757 0.91782 0.91734 0.91989 0.88585 0.96292 0.89341 0.92998 0.79791 0.91632 0.90825 0.92200 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.59 36.01 0.35 -0.63 16 2 C -0.10 -1.16 5.87 -104.68 -0.61 -1.78 16 3 C -0.09 -0.96 9.69 -39.49 -0.38 -1.35 16 4 C -0.13 -1.42 10.03 -39.64 -0.40 -1.82 16 5 C -0.08 -0.98 9.54 -39.18 -0.37 -1.35 16 6 C -0.13 -1.85 5.87 -104.97 -0.62 -2.47 16 7 C 0.56 8.24 7.75 -12.33 -0.10 8.15 16 8 O -0.54 -9.08 13.24 5.32 0.07 -9.01 16 9 N -0.71 -9.11 5.32 -61.25 -0.33 -9.43 16 10 C 0.13 1.51 4.93 -4.04 -0.02 1.49 16 11 C 0.06 0.68 2.43 -67.71 -0.16 0.52 16 12 H 0.09 0.84 8.06 -51.93 -0.42 0.42 16 13 C -0.19 -1.73 8.44 37.16 0.31 -1.42 16 14 N -0.51 -7.29 4.01 -236.32 -0.95 -8.24 16 15 C 0.02 0.28 9.11 60.06 0.55 0.83 16 16 C 0.04 0.62 4.34 -4.97 -0.02 0.60 16 17 C 0.45 10.13 7.43 -10.98 -0.08 10.05 16 18 O -0.56 -14.42 13.95 5.55 0.08 -14.34 16 19 N -0.59 -14.13 5.09 -10.96 -0.06 -14.19 16 20 C -0.30 -8.60 10.16 -14.94 -0.15 -8.75 16 21 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 22 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 23 N -0.88 -25.87 13.96 55.50 0.77 -25.09 16 24 Si 0.88 19.65 27.74 -169.99 -4.71 14.94 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.27 -5.58 6.52 56.52 0.37 -5.21 16 28 C -0.02 -0.31 5.91 -104.23 -0.62 -0.93 16 29 C -0.13 -1.59 8.53 36.00 0.31 -1.28 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.07 0.56 5.87 -51.93 -0.30 0.26 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.13 1.37 6.41 -52.49 -0.34 1.04 16 36 H 0.41 4.94 6.31 -40.82 -0.26 4.68 16 37 H 0.07 0.94 6.57 -51.93 -0.34 0.59 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.64 6.54 -51.93 -0.34 0.30 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.60 6.66 -51.93 -0.35 0.26 16 42 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 43 H 0.10 1.73 5.79 -51.93 -0.30 1.43 16 44 H 0.02 0.23 6.52 -51.93 -0.34 -0.11 16 45 H 0.09 1.40 6.23 -51.93 -0.32 1.07 16 46 H 0.05 0.76 6.83 -51.93 -0.35 0.40 16 47 H 0.37 7.88 5.76 -40.82 -0.24 7.65 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 50 H 0.06 0.59 5.67 -51.93 -0.29 0.29 16 51 H 0.10 1.38 5.69 -51.93 -0.30 1.08 16 LS Contribution 398.68 15.07 6.01 6.01 Total: -1.00 -33.72 398.68 -8.66 -42.37 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -7.42 Total: 16.06 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -2.12 Total: 0.94 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.56 Total: -56.96 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.15 Total: -23.35 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.94 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.72 -8.66 -42.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485379180.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.781 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds