Wall clock time and date at job start Wed Apr 1 2020 04:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38378 * 119.92938 * 2 1 4 4 C 1.38335 * 120.29189 * 179.97438 * 3 2 1 5 5 C 1.37980 * 120.14758 * 0.02562 * 4 3 2 6 6 C 1.39556 * 119.85036 * 359.97438 * 5 4 3 7 7 C 1.47846 * 120.14365 * 180.02562 * 6 5 4 8 8 O 1.21556 * 119.99629 * 181.82232 * 7 6 5 9 9 N 1.34773 * 120.00252 * 1.81882 * 7 6 5 10 10 C 1.46502 * 120.00032 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46953 * 185.03987 * 10 9 7 12 12 H 1.09002 * 109.47391 * 296.26773 * 11 10 9 13 13 C 1.52995 * 109.47190 * 176.26552 * 11 10 9 14 14 N 1.46903 * 109.47024 * 56.26367 * 11 10 9 15 15 C 1.46899 * 110.99872 * 191.56289 * 14 11 10 16 16 C 1.46904 * 110.99882 * 67.60915 * 14 11 10 17 17 C 1.50699 * 109.46849 * 189.99821 * 16 14 11 18 18 O 1.21293 * 120.00085 * 0.02562 * 17 16 14 19 19 N 1.34783 * 119.99595 * 180.02562 * 17 16 14 20 20 C 1.37092 * 119.99693 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00189 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00264 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00593 * 180.02562 * 22 20 19 24 24 Si 1.86808 * 119.99402 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.46874 * 89.99894 * 24 22 20 26 26 H 1.48499 * 109.46958 * 209.99855 * 24 22 20 27 27 H 1.48493 * 109.47040 * 329.99738 * 24 22 20 28 28 C 1.37943 * 119.92231 * 179.97438 * 2 1 3 29 29 C 1.50695 * 120.07541 * 0.28072 * 28 2 1 30 30 H 1.09002 * 109.46982 * 270.00305 * 1 2 3 31 31 H 1.09001 * 109.47274 * 29.99946 * 1 2 3 32 32 H 1.08997 * 109.47401 * 150.00015 * 1 2 3 33 33 H 1.07997 * 119.85404 * 359.97438 * 3 2 1 34 34 H 1.07997 * 119.92958 * 179.97438 * 4 3 2 35 35 H 1.07993 * 120.07985 * 180.02562 * 5 4 3 36 36 H 0.97000 * 119.99769 * 0.02562 * 9 7 6 37 37 H 1.08996 * 109.47398 * 305.04100 * 10 9 7 38 38 H 1.09001 * 109.46822 * 65.04348 * 10 9 7 39 39 H 1.09006 * 109.46743 * 299.99738 * 13 11 10 40 40 H 1.09000 * 109.47102 * 60.00013 * 13 11 10 41 41 H 1.09001 * 109.47408 * 180.02562 * 13 11 10 42 42 H 1.09008 * 109.47178 * 64.73324 * 15 14 11 43 43 H 1.09000 * 109.46739 * 184.72620 * 15 14 11 44 44 H 1.09000 * 109.47419 * 304.73064 * 15 14 11 45 45 H 1.08999 * 109.46918 * 310.00366 * 16 14 11 46 46 H 1.08999 * 109.46714 * 70.00413 * 16 14 11 47 47 H 0.96991 * 119.99702 * 0.02562 * 19 17 16 48 48 H 0.97002 * 120.00060 * 179.97438 * 23 22 20 49 49 H 1.09007 * 109.46760 * 262.29089 * 29 28 2 50 50 H 1.09004 * 109.47115 * 22.28880 * 29 28 2 51 51 H 1.09003 * 109.47335 * 142.29439 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5807 1.2080 0.0005 5 6 4.2812 0.0192 0.0005 6 6 3.5911 -1.1937 0.0005 7 6 4.3351 -2.4713 0.0011 8 8 3.7318 -3.5260 -0.0324 9 7 5.6823 -2.4665 0.0387 10 6 6.4196 -3.7325 0.0387 11 6 7.9138 -3.4525 0.2116 12 1 8.2784 -2.8841 -0.6441 13 6 8.6735 -4.7772 0.3050 14 7 8.1277 -2.6776 1.4411 15 6 9.4996 -2.1561 1.5028 16 6 7.8160 -3.4811 2.6308 17 6 7.8077 -2.5933 3.8485 18 8 8.0383 -1.4078 3.7363 19 7 7.5441 -3.1168 5.0622 20 6 7.5371 -2.3093 6.1701 21 1 7.7424 -1.2537 6.0702 22 6 7.2647 -2.8487 7.4213 23 7 7.2575 -2.0747 8.4832 24 14 6.9089 -4.6745 7.5938 25 1 8.1793 -5.4062 7.8296 26 1 5.9912 -4.8936 8.7406 27 1 6.2732 -5.1747 6.3486 28 6 2.1951 -1.1956 0.0005 29 6 1.4416 -2.5006 -0.0053 30 1 -0.3633 0.0001 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5138 33 1 1.6539 2.1325 -0.0004 34 1 4.1136 2.1473 0.0001 35 1 5.3611 0.0273 0.0014 36 1 6.1638 -1.6249 0.0657 37 1 6.0695 -4.3569 0.8606 38 1 6.2538 -4.2495 -0.9065 39 1 8.3090 -5.3455 1.1608 40 1 8.5148 -5.3522 -0.6073 41 1 9.7380 -4.5777 0.4286 42 1 9.6541 -1.4431 0.6928 43 1 9.6564 -1.6583 2.4597 44 1 10.2063 -2.9797 1.4015 45 1 6.8358 -3.9426 2.5108 46 1 8.5709 -4.2578 2.7525 47 1 7.3600 -4.0649 5.1518 48 1 7.0670 -2.4513 9.3566 49 1 1.3750 -2.8862 1.0122 50 1 0.4380 -2.3390 -0.3990 51 1 1.9667 -3.2206 -0.6330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485379180.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:34 Heat of formation + Delta-G solvation = -55.842347 kcal Electronic energy + Delta-G solvation = -31159.072603 eV Core-core repulsion = 27057.804317 eV Total energy + Delta-G solvation = -4101.268286 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.48528 -40.70702 -39.59280 -38.66896 -36.06812 -35.56968 -34.20174 -33.75507 -33.12745 -31.94955 -29.72214 -28.89056 -27.40968 -27.24586 -26.60633 -25.24325 -24.02535 -22.00576 -21.64937 -21.12404 -20.89427 -19.90641 -18.45390 -18.08670 -17.38025 -16.97825 -16.68820 -16.65079 -16.25283 -16.14401 -15.95467 -15.82010 -15.33742 -15.11771 -14.94480 -14.85271 -14.38221 -14.33609 -14.02257 -13.97802 -13.84216 -13.70114 -13.49745 -13.30632 -13.13782 -13.04737 -12.87992 -12.74838 -12.71897 -12.51057 -12.47397 -12.44667 -12.19258 -12.01432 -11.76661 -11.72336 -11.46474 -10.58569 -10.36307 -10.23139 -10.13040 -9.70310 -9.52451 -9.18875 -8.42472 -6.02131 -0.10858 0.38649 1.27701 1.31541 1.40385 1.87898 1.95578 2.20133 2.21860 2.63593 2.85514 3.13977 3.22757 3.72224 3.75785 3.82632 3.92678 3.99806 4.09080 4.14868 4.24421 4.28213 4.33567 4.37473 4.39897 4.58964 4.63122 4.64359 4.66210 4.70011 4.77729 4.81705 4.85039 4.91296 4.96033 4.96365 5.02839 5.16230 5.23433 5.29194 5.32214 5.39166 5.47771 5.51859 5.57051 5.68159 5.89165 5.99911 6.00819 6.19298 6.57664 6.58973 6.88092 7.23711 7.39534 7.96366 8.75118 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008438 B = 0.003282 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.721527 B = 8528.536346 C =10045.665295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.109 4.109 3 C -0.093 4.093 4 C -0.136 4.136 5 C -0.092 4.092 6 C -0.159 4.159 7 C 0.551 3.449 8 O -0.570 6.570 9 N -0.703 5.703 10 C 0.128 3.872 11 C 0.073 3.927 12 H 0.111 0.889 13 C -0.182 4.182 14 N -0.527 5.527 15 C 0.026 3.974 16 C 0.053 3.947 17 C 0.453 3.547 18 O -0.599 6.599 19 N -0.596 5.596 20 C -0.324 4.324 21 H 0.058 0.942 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.958 3.042 25 H -0.254 1.254 26 H -0.275 1.275 27 H -0.239 1.239 28 C -0.048 4.048 29 C -0.121 4.121 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.135 0.865 36 H 0.411 0.589 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.050 0.950 44 H 0.040 0.960 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.386 0.614 48 H 0.278 0.722 49 H 0.058 0.942 50 H 0.083 0.917 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.537 -2.851 -23.399 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.109 4.109 3 C -0.111 4.111 4 C -0.154 4.154 5 C -0.111 4.111 6 C -0.162 4.162 7 C 0.340 3.660 8 O -0.452 6.452 9 N -0.354 5.354 10 C 0.004 3.996 11 C -0.035 4.035 12 H 0.129 0.871 13 C -0.241 4.241 14 N -0.251 5.251 15 C -0.122 4.122 16 C -0.078 4.078 17 C 0.241 3.759 18 O -0.482 6.482 19 N -0.238 5.238 20 C -0.453 4.453 21 H 0.076 0.924 22 C -0.211 4.211 23 N -0.574 5.574 24 Si 0.779 3.221 25 H -0.178 1.178 26 H -0.200 1.200 27 H -0.162 1.162 28 C -0.049 4.049 29 C -0.177 4.177 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.171 0.829 34 H 0.168 0.832 35 H 0.153 0.847 36 H 0.248 0.752 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.118 0.882 46 H 0.098 0.902 47 H 0.221 0.779 48 H 0.088 0.912 49 H 0.076 0.924 50 H 0.102 0.898 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.098 -2.372 -23.299 24.471 hybrid contribution 0.792 -0.899 1.149 1.660 sum -6.307 -3.271 -22.150 23.262 Atomic orbital electron populations 1.20914 0.88949 1.04119 1.03119 1.20114 0.97863 0.91971 1.00956 1.21602 0.94386 0.98419 0.96660 1.21412 0.94804 0.98503 1.00651 1.21508 1.00532 0.91857 0.97194 1.19889 0.94282 0.93199 1.08865 1.18529 0.82633 0.88928 0.75944 1.90653 1.68474 1.33800 1.52259 1.45750 1.05364 1.10928 1.73373 1.21527 0.90458 0.85530 1.02108 1.22085 0.93735 0.94870 0.92837 0.87109 1.22373 1.00914 0.97013 1.03816 1.61712 1.26620 1.36367 1.00404 1.22434 0.87134 0.99490 1.03147 1.21803 1.03235 0.94180 0.88619 1.20841 0.81170 0.89263 0.84619 1.90508 1.53335 1.18308 1.86061 1.42084 1.65204 1.10051 1.06469 1.18991 1.47315 0.93382 0.85630 0.92359 1.26021 0.96560 1.04603 0.93951 1.69790 1.49480 1.38402 0.99764 0.85453 0.79671 0.77235 0.79756 1.17838 1.19987 1.16238 1.20112 0.92152 0.96638 0.95985 1.21116 0.99981 0.93985 1.02607 0.90727 0.89584 0.90435 0.82882 0.83212 0.84705 0.75163 0.92645 0.89695 0.92227 0.89667 0.91284 0.90041 0.93084 0.94113 0.88235 0.90199 0.77907 0.91200 0.92362 0.89829 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 9.59 71.24 0.68 -1.02 16 2 C -0.11 -2.32 5.87 -19.90 -0.12 -2.44 16 3 C -0.09 -1.76 9.69 22.33 0.22 -1.55 16 4 C -0.14 -2.78 10.03 22.23 0.22 -2.56 16 5 C -0.09 -2.22 9.54 22.53 0.21 -2.01 16 6 C -0.16 -4.46 5.87 -20.09 -0.12 -4.57 16 7 C 0.55 16.48 7.75 86.79 0.67 17.15 16 8 O -0.57 -19.52 13.24 -3.89 -0.05 -19.57 16 9 N -0.70 -17.68 5.32 -465.97 -2.48 -20.16 16 10 C 0.13 2.76 4.93 86.38 0.43 3.18 16 11 C 0.07 1.35 2.43 44.91 0.11 1.46 16 12 H 0.11 1.66 8.06 -2.39 -0.02 1.64 16 13 C -0.18 -2.69 8.44 71.98 0.61 -2.09 16 14 N -0.53 -14.16 4.01 -901.59 -3.62 -17.77 16 15 C 0.03 0.68 9.11 127.69 1.16 1.85 16 16 C 0.05 1.64 4.34 85.56 0.37 2.02 16 17 C 0.45 20.50 7.43 87.66 0.65 21.15 16 18 O -0.60 -32.17 13.95 -3.07 -0.04 -32.22 16 19 N -0.60 -28.76 5.09 -306.98 -1.56 -30.32 16 20 C -0.32 -19.18 10.16 84.04 0.85 -18.33 16 21 H 0.06 4.07 7.39 -2.91 -0.02 4.05 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 23 N -0.93 -56.86 13.96 21.66 0.30 -56.56 16 24 Si 0.96 40.01 27.74 68.60 1.90 41.91 16 25 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 27 H -0.24 -8.71 6.52 99.48 0.65 -8.06 16 28 C -0.05 -1.26 5.91 -19.61 -0.12 -1.37 16 29 C -0.12 -3.04 8.53 71.23 0.61 -2.44 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 0.92 8.08 -2.39 -0.02 0.90 16 32 H 0.08 1.06 5.87 -2.39 -0.01 1.05 16 33 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 34 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 35 H 0.14 2.89 6.41 -2.91 -0.02 2.87 16 36 H 0.41 9.71 6.31 -92.71 -0.59 9.12 16 37 H 0.06 1.39 6.57 -2.39 -0.02 1.37 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 0.96 6.54 -2.38 -0.02 0.94 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 41 H 0.07 1.00 6.66 -2.39 -0.02 0.98 16 42 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.05 1.86 5.79 -2.39 -0.01 1.84 16 44 H 0.04 0.90 6.52 -2.39 -0.02 0.88 16 45 H 0.10 2.95 6.23 -2.39 -0.01 2.93 16 46 H 0.08 2.09 6.83 -2.39 -0.02 2.07 16 47 H 0.39 15.84 5.76 -92.71 -0.53 15.31 16 48 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 49 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 50 H 0.08 1.60 5.67 -2.38 -0.01 1.58 16 51 H 0.08 2.36 5.69 -2.39 -0.01 2.34 16 Total: -1.00 -79.81 398.68 1.17 -78.64 By element: Atomic # 1 Polarization: 48.06 SS G_CDS: -0.20 Total: 47.86 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 6.91 Total: 8.20 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -7.36 Total: -124.81 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -0.09 Total: -51.79 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 1.90 Total: 41.91 kcal Total: -79.81 1.17 -78.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485379180.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.794 kcal (2) G-P(sol) polarization free energy of solvation -79.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds