Wall clock time and date at job start Wed Apr 1 2020 04:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.64255 * 2 1 4 4 O 1.21280 * 119.99913 * 122.83870 * 3 2 1 5 5 N 1.34771 * 119.99833 * 302.84682 * 3 2 1 6 6 C 1.47867 * 126.92980 * 4.75175 * 5 3 2 7 7 C 1.55999 * 105.12176 * 181.81324 * 6 5 3 8 8 H 1.09003 * 116.17701 * 159.91535 * 7 6 5 9 9 C 1.57080 * 99.46952 * 33.16488 * 7 6 5 10 10 C 1.49283 * 126.92378 * 185.07259 * 5 3 2 11 11 H 1.09001 * 116.12730 * 15.99429 * 10 5 3 12 12 C 1.56013 * 104.12534 * 246.88330 * 10 5 3 13 13 N 1.48284 * 105.07265 * 288.79907 * 12 10 5 14 14 C 1.46901 * 111.00096 * 122.54553 * 13 12 10 15 15 C 1.50693 * 109.46915 * 184.66104 * 14 13 12 16 16 O 1.21298 * 120.00254 * 353.73961 * 15 14 13 17 17 N 1.34776 * 119.99824 * 173.72923 * 15 14 13 18 18 C 1.37098 * 120.00341 * 185.39965 * 17 15 14 19 19 H 1.08007 * 119.99930 * 5.36449 * 18 17 15 20 20 C 1.38945 * 120.00393 * 185.35842 * 18 17 15 21 21 N 1.31413 * 119.99853 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00071 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47589 * 59.99890 * 22 20 18 24 24 H 1.48502 * 109.46917 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46750 * 299.99515 * 22 20 18 26 26 C 1.53023 * 109.80972 * 120.52752 * 2 1 3 27 27 C 1.50074 * 110.14130 * 169.22117 * 26 2 1 28 28 C 1.29432 * 124.07962 * 342.87192 * 27 26 2 29 29 C 1.50069 * 124.07587 * 0.46872 * 28 27 26 30 30 C 1.53025 * 110.14607 * 342.86458 * 29 28 27 31 31 H 1.09002 * 109.47483 * 193.32739 * 1 2 3 32 32 H 1.08997 * 109.47124 * 313.33660 * 1 2 3 33 33 H 1.09005 * 109.46864 * 73.33204 * 1 2 3 34 34 H 1.08996 * 110.31157 * 300.85052 * 6 5 3 35 35 H 1.09000 * 110.30933 * 63.03066 * 6 5 3 36 36 H 1.09001 * 112.36208 * 191.54671 * 9 7 6 37 37 H 1.08999 * 112.35627 * 64.12912 * 9 7 6 38 38 H 1.09000 * 110.32553 * 47.70052 * 12 10 5 39 39 H 1.09005 * 110.32182 * 169.89771 * 12 10 5 40 40 H 1.09000 * 109.46875 * 304.66687 * 14 13 12 41 41 H 1.09000 * 109.46713 * 64.66388 * 14 13 12 42 42 H 0.97003 * 120.00314 * 5.40910 * 17 15 14 43 43 H 0.97002 * 119.99459 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.36550 * 289.42818 * 26 2 1 45 45 H 1.08997 * 109.35947 * 49.15871 * 26 2 1 46 46 H 1.08004 * 117.95842 * 162.86782 * 27 26 2 47 47 H 1.08005 * 117.96688 * 180.48820 * 28 27 26 48 48 H 1.09004 * 109.35924 * 222.66646 * 29 28 27 49 49 H 1.08997 * 109.36423 * 103.07425 * 29 28 27 50 50 H 1.09002 * 109.64156 * 169.11981 * 30 29 28 51 51 H 1.08997 * 109.64589 * 289.75305 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0366 1.4193 0.0000 4 8 2.7769 1.7989 0.8825 5 7 1.6669 2.2667 -0.9806 6 6 0.7019 1.9996 -2.0687 7 6 0.6935 3.2982 -2.9330 8 1 0.3192 3.1954 -3.9516 9 6 2.1927 3.7338 -2.7596 10 6 2.1540 3.6621 -1.1910 11 1 3.0637 3.9384 -0.6578 12 6 0.8994 4.5485 -0.9189 13 7 0.0008 4.3099 -2.0741 14 6 -1.3086 3.8147 -1.6291 15 6 -2.1524 3.4760 -2.8309 16 8 -1.7524 3.7371 -3.9458 17 7 -3.3514 2.8828 -2.6668 18 6 -4.0697 2.4743 -3.7609 19 1 -3.6384 2.5484 -4.7483 20 6 -5.3522 1.9649 -3.5994 21 7 -5.8771 1.8751 -2.3979 22 14 -6.3305 1.4078 -5.0900 23 1 -5.5972 0.3194 -5.7849 24 1 -7.6585 0.9080 -4.6520 25 1 -6.5134 2.5526 -6.0181 26 6 2.0486 -0.7313 1.2401 27 6 3.5260 -0.9670 1.1210 28 6 4.1844 -0.8957 0.0090 29 6 3.5644 -0.5575 -1.3151 30 6 2.0457 -0.7316 -1.2458 31 1 -0.3634 -1.0000 0.2369 32 1 -0.3633 0.7052 0.7474 33 1 -0.3633 0.2948 -0.9845 34 1 1.0300 1.1481 -2.6648 35 1 -0.2904 1.8147 -1.6573 36 1 2.3757 4.7447 -3.1240 37 1 2.8866 3.0121 -3.1906 38 1 0.4137 4.2429 0.0079 39 1 1.1822 5.6001 -0.8700 40 1 -1.1712 2.9223 -1.0184 41 1 -1.8073 4.5846 -1.0404 42 1 -3.7064 2.7449 -1.7747 43 1 -6.7726 1.5198 -2.2853 44 1 1.8493 -0.1276 2.1255 45 1 1.5384 -1.6899 1.3341 46 1 4.0738 -1.2112 2.0192 47 1 5.2461 -1.0921 0.0355 48 1 3.9689 -1.2175 -2.0826 49 1 3.7983 0.4760 -1.5703 50 1 1.5868 -0.3046 -2.1375 51 1 1.8011 -1.7914 -1.1758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494656718.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:59 Heat of formation + Delta-G solvation = -4.733815 kcal Electronic energy + Delta-G solvation = -33076.746384 eV Core-core repulsion = 28977.694330 eV Total energy + Delta-G solvation = -4099.052054 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.57051 -39.90928 -37.98148 -37.01592 -34.29248 -33.83169 -32.98739 -31.39867 -31.07066 -30.44771 -29.72497 -26.81270 -26.57737 -25.31883 -24.27732 -23.37849 -22.78124 -21.05022 -20.38469 -19.37520 -18.98081 -17.98607 -17.73326 -16.69440 -16.48998 -16.26637 -15.88584 -15.39823 -14.99162 -14.74662 -14.53587 -14.04109 -13.94928 -13.86782 -13.80548 -13.40867 -13.22593 -12.89611 -12.78863 -12.61014 -12.46256 -12.31189 -12.18237 -12.07681 -11.86425 -11.81663 -11.58671 -11.49741 -11.37868 -11.34708 -11.09621 -11.01377 -10.85049 -10.54748 -10.48701 -10.27980 -10.25273 -9.63637 -9.52029 -9.03378 -8.63776 -8.41353 -8.04111 -7.94260 -6.47090 -3.88698 2.27820 2.66937 2.85858 3.15468 3.22567 3.26097 3.82045 3.91013 4.16314 4.26180 4.37494 4.49374 4.53277 4.57073 4.70949 4.89993 4.99585 5.00756 5.05609 5.14120 5.16967 5.19062 5.28057 5.30657 5.34385 5.46010 5.55236 5.59181 5.63138 5.65001 5.70504 5.75933 5.76787 5.80209 5.87552 5.90040 5.91872 5.97751 6.00034 6.08429 6.10044 6.18958 6.27812 6.36487 6.56694 6.89738 6.96886 7.15130 7.49185 7.55651 7.99467 8.19277 8.54964 9.11837 9.47266 9.98039 10.70203 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013020 B = 0.003411 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.014684 B = 8205.786391 C = 9322.052984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.076 4.076 3 C 0.548 3.452 4 O -0.539 6.539 5 N -0.617 5.617 6 C 0.049 3.951 7 C 0.070 3.930 8 H 0.153 0.847 9 C -0.136 4.136 10 C 0.109 3.891 11 H 0.122 0.878 12 C 0.025 3.975 13 N -0.491 5.491 14 C 0.030 3.970 15 C 0.442 3.558 16 O -0.579 6.579 17 N -0.561 5.561 18 C -0.300 4.300 19 H 0.102 0.898 20 C 0.025 3.975 21 N -0.900 5.900 22 Si 0.929 3.071 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.067 4.067 27 C -0.134 4.134 28 C -0.163 4.163 29 C -0.092 4.092 30 C -0.112 4.112 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.089 0.911 42 H 0.391 0.609 43 H 0.272 0.728 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.077 0.923 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.939 -4.532 5.617 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.079 4.079 3 C 0.337 3.663 4 O -0.416 6.416 5 N -0.352 5.352 6 C -0.074 4.074 7 C -0.038 4.038 8 H 0.170 0.830 9 C -0.175 4.175 10 C 0.006 3.994 11 H 0.140 0.860 12 C -0.104 4.104 13 N -0.214 5.214 14 C -0.102 4.102 15 C 0.228 3.772 16 O -0.463 6.463 17 N -0.198 5.198 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.177 4.177 21 N -0.540 5.540 22 Si 0.756 3.244 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.104 4.104 27 C -0.153 4.153 28 C -0.181 4.181 29 C -0.129 4.129 30 C -0.149 4.149 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.224 0.776 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.095 0.905 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.310 -3.829 5.219 17.547 hybrid contribution -0.781 -1.130 0.507 1.464 sum 15.529 -4.959 5.727 17.278 Atomic orbital electron populations 1.22078 0.92198 1.03188 1.03488 1.20841 0.97043 0.92089 0.97891 1.20071 0.79885 0.86313 0.80073 1.90667 1.37168 1.77818 1.35954 1.49266 1.43767 1.14246 1.27955 1.23744 0.93548 1.00595 0.89557 1.24894 0.92511 0.87385 0.99014 0.82985 1.23970 0.96563 1.02903 0.94031 1.24030 0.97511 0.81423 0.96437 0.85983 1.23739 0.92920 1.00136 0.93564 1.64746 1.01050 1.41160 1.14487 1.22222 0.91088 0.99633 0.97231 1.19657 0.83938 0.83837 0.89795 1.90482 1.72875 1.57315 1.25614 1.41863 1.16285 1.51879 1.09756 1.19625 0.96475 1.37924 0.88961 0.87976 1.25261 0.97011 0.97608 0.97858 1.69606 1.17120 1.45906 1.21412 0.85945 0.78450 0.79114 0.80881 1.19902 1.20983 1.19843 1.20351 0.93513 0.99694 0.96869 1.21864 0.95890 0.99936 0.97562 1.21874 0.99310 1.02369 0.94576 1.20445 0.94835 1.01653 0.95921 1.21801 0.95597 1.00926 0.96613 0.91134 0.92152 0.90830 0.90647 0.89363 0.88703 0.90168 0.92254 0.89425 0.93032 0.89238 0.77552 0.91766 0.90253 0.90193 0.88082 0.88302 0.90885 0.91246 0.90497 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 7.94 37.16 0.30 -1.45 16 2 C -0.08 -0.88 0.51 -155.44 -0.08 -0.96 16 3 C 0.55 7.60 4.86 -10.99 -0.05 7.55 16 4 O -0.54 -9.01 15.48 5.56 0.09 -8.93 16 5 N -0.62 -8.00 2.93 -156.81 -0.46 -8.46 16 6 C 0.05 0.65 4.11 -1.69 -0.01 0.64 16 7 C 0.07 1.02 4.18 -62.33 -0.26 0.76 16 8 H 0.15 2.60 6.49 -51.93 -0.34 2.26 16 9 C -0.14 -1.58 6.80 -22.31 -0.15 -1.73 16 10 C 0.11 1.34 5.23 -62.56 -0.33 1.01 16 11 H 0.12 1.44 8.08 -51.93 -0.42 1.02 16 12 C 0.03 0.33 6.28 -1.45 -0.01 0.32 16 13 N -0.49 -7.67 5.13 -218.19 -1.12 -8.79 16 14 C 0.03 0.51 4.67 -4.98 -0.02 0.48 16 15 C 0.44 9.68 7.29 -10.99 -0.08 9.60 16 16 O -0.58 -14.30 13.84 5.54 0.08 -14.23 16 17 N -0.56 -13.38 5.28 -10.96 -0.06 -13.44 16 18 C -0.30 -7.93 9.66 -14.93 -0.14 -8.07 16 19 H 0.10 2.81 7.20 -52.48 -0.38 2.43 16 20 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 21 N -0.90 -23.62 13.06 55.50 0.72 -22.90 16 22 Si 0.93 20.28 29.55 -169.99 -5.02 15.25 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 C -0.07 -0.74 4.55 -28.17 -0.13 -0.87 16 27 C -0.13 -1.51 8.87 -35.89 -0.32 -1.83 16 28 C -0.16 -1.79 9.56 -35.90 -0.34 -2.13 16 29 C -0.09 -0.96 5.59 -28.18 -0.16 -1.12 16 30 C -0.11 -1.17 4.73 -26.51 -0.13 -1.29 16 31 H 0.07 0.71 7.95 -51.93 -0.41 0.29 16 32 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.07 0.90 5.02 -51.93 -0.26 0.64 16 34 H 0.08 0.93 5.61 -51.93 -0.29 0.64 16 35 H 0.09 1.30 3.20 -51.93 -0.17 1.14 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.81 7.61 -51.93 -0.40 0.42 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.83 5.71 -51.93 -0.30 0.53 16 41 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.39 9.06 7.92 -40.82 -0.32 8.73 16 43 H 0.27 6.82 8.31 -40.82 -0.34 6.49 16 44 H 0.08 0.96 7.81 -51.93 -0.41 0.55 16 45 H 0.08 0.75 7.97 -51.93 -0.41 0.33 16 46 H 0.10 1.03 8.06 -52.48 -0.42 0.60 16 47 H 0.10 0.97 8.06 -52.48 -0.42 0.55 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.07 0.82 7.41 -51.93 -0.38 0.43 16 50 H 0.08 0.80 5.20 -51.93 -0.27 0.53 16 51 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 LS Contribution 381.44 15.07 5.75 5.75 Total: -1.00 -30.19 381.44 -9.72 -39.92 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -7.69 Total: 14.36 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -2.01 Total: 1.45 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.91 Total: -53.58 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: 0.16 Total: -23.15 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.19 -9.72 -39.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494656718.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.184 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds