Wall clock time and date at job start Wed Apr 1 2020 04:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.64255 * 2 1 4 4 O 1.21280 * 119.99913 * 122.83870 * 3 2 1 5 5 N 1.34771 * 119.99833 * 302.84682 * 3 2 1 6 6 C 1.47867 * 126.92980 * 4.75175 * 5 3 2 7 7 C 1.55999 * 105.12176 * 181.81324 * 6 5 3 8 8 H 1.09003 * 116.17701 * 159.91535 * 7 6 5 9 9 C 1.57080 * 99.46952 * 33.16488 * 7 6 5 10 10 C 1.49283 * 126.92378 * 185.07259 * 5 3 2 11 11 H 1.09001 * 116.12730 * 15.99429 * 10 5 3 12 12 C 1.56013 * 104.12534 * 246.88330 * 10 5 3 13 13 N 1.48284 * 105.07265 * 288.79907 * 12 10 5 14 14 C 1.46901 * 111.00096 * 122.54553 * 13 12 10 15 15 C 1.50693 * 109.46915 * 184.66104 * 14 13 12 16 16 O 1.21298 * 120.00254 * 353.73961 * 15 14 13 17 17 N 1.34776 * 119.99824 * 173.72923 * 15 14 13 18 18 C 1.37098 * 120.00341 * 185.39965 * 17 15 14 19 19 H 1.08007 * 119.99930 * 5.36449 * 18 17 15 20 20 C 1.38945 * 120.00393 * 185.35842 * 18 17 15 21 21 N 1.31413 * 119.99853 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00071 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47589 * 59.99890 * 22 20 18 24 24 H 1.48502 * 109.46917 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46750 * 299.99515 * 22 20 18 26 26 C 1.53023 * 109.80972 * 120.52752 * 2 1 3 27 27 C 1.50074 * 110.14130 * 169.22117 * 26 2 1 28 28 C 1.29432 * 124.07962 * 342.87192 * 27 26 2 29 29 C 1.50069 * 124.07587 * 0.46872 * 28 27 26 30 30 C 1.53025 * 110.14607 * 342.86458 * 29 28 27 31 31 H 1.09002 * 109.47483 * 193.32739 * 1 2 3 32 32 H 1.08997 * 109.47124 * 313.33660 * 1 2 3 33 33 H 1.09005 * 109.46864 * 73.33204 * 1 2 3 34 34 H 1.08996 * 110.31157 * 300.85052 * 6 5 3 35 35 H 1.09000 * 110.30933 * 63.03066 * 6 5 3 36 36 H 1.09001 * 112.36208 * 191.54671 * 9 7 6 37 37 H 1.08999 * 112.35627 * 64.12912 * 9 7 6 38 38 H 1.09000 * 110.32553 * 47.70052 * 12 10 5 39 39 H 1.09005 * 110.32182 * 169.89771 * 12 10 5 40 40 H 1.09000 * 109.46875 * 304.66687 * 14 13 12 41 41 H 1.09000 * 109.46713 * 64.66388 * 14 13 12 42 42 H 0.97003 * 120.00314 * 5.40910 * 17 15 14 43 43 H 0.97002 * 119.99459 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.36550 * 289.42818 * 26 2 1 45 45 H 1.08997 * 109.35947 * 49.15871 * 26 2 1 46 46 H 1.08004 * 117.95842 * 162.86782 * 27 26 2 47 47 H 1.08005 * 117.96688 * 180.48820 * 28 27 26 48 48 H 1.09004 * 109.35924 * 222.66646 * 29 28 27 49 49 H 1.08997 * 109.36423 * 103.07425 * 29 28 27 50 50 H 1.09002 * 109.64156 * 169.11981 * 30 29 28 51 51 H 1.08997 * 109.64589 * 289.75305 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0366 1.4193 0.0000 4 8 2.7769 1.7989 0.8825 5 7 1.6669 2.2667 -0.9806 6 6 0.7019 1.9996 -2.0687 7 6 0.6935 3.2982 -2.9330 8 1 0.3192 3.1954 -3.9516 9 6 2.1927 3.7338 -2.7596 10 6 2.1540 3.6621 -1.1910 11 1 3.0637 3.9384 -0.6578 12 6 0.8994 4.5485 -0.9189 13 7 0.0008 4.3099 -2.0741 14 6 -1.3086 3.8147 -1.6291 15 6 -2.1524 3.4760 -2.8309 16 8 -1.7524 3.7371 -3.9458 17 7 -3.3514 2.8828 -2.6668 18 6 -4.0697 2.4743 -3.7609 19 1 -3.6384 2.5484 -4.7483 20 6 -5.3522 1.9649 -3.5994 21 7 -5.8771 1.8751 -2.3979 22 14 -6.3305 1.4078 -5.0900 23 1 -5.5972 0.3194 -5.7849 24 1 -7.6585 0.9080 -4.6520 25 1 -6.5134 2.5526 -6.0181 26 6 2.0486 -0.7313 1.2401 27 6 3.5260 -0.9670 1.1210 28 6 4.1844 -0.8957 0.0090 29 6 3.5644 -0.5575 -1.3151 30 6 2.0457 -0.7316 -1.2458 31 1 -0.3634 -1.0000 0.2369 32 1 -0.3633 0.7052 0.7474 33 1 -0.3633 0.2948 -0.9845 34 1 1.0300 1.1481 -2.6648 35 1 -0.2904 1.8147 -1.6573 36 1 2.3757 4.7447 -3.1240 37 1 2.8866 3.0121 -3.1906 38 1 0.4137 4.2429 0.0079 39 1 1.1822 5.6001 -0.8700 40 1 -1.1712 2.9223 -1.0184 41 1 -1.8073 4.5846 -1.0404 42 1 -3.7064 2.7449 -1.7747 43 1 -6.7726 1.5198 -2.2853 44 1 1.8493 -0.1276 2.1255 45 1 1.5384 -1.6899 1.3341 46 1 4.0738 -1.2112 2.0192 47 1 5.2461 -1.0921 0.0355 48 1 3.9689 -1.2175 -2.0826 49 1 3.7983 0.4760 -1.5703 50 1 1.5868 -0.3046 -2.1375 51 1 1.8011 -1.7914 -1.1758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494656718.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:57 Heat of formation + Delta-G solvation = -24.171762 kcal Electronic energy + Delta-G solvation = -33077.589276 eV Core-core repulsion = 28977.694330 eV Total energy + Delta-G solvation = -4099.894946 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.66192 -40.99991 -39.67715 -38.07875 -35.99865 -35.15667 -34.03255 -33.23744 -32.10949 -31.47378 -30.82624 -28.15395 -27.66825 -26.41929 -25.95696 -24.25551 -23.80484 -22.09411 -21.59006 -20.90386 -20.15512 -19.75347 -18.78164 -17.97910 -17.62956 -17.40139 -17.11706 -16.70983 -16.35550 -16.04648 -15.82587 -15.63252 -15.20537 -15.05560 -14.77313 -14.71378 -14.33374 -14.08170 -13.85431 -13.68605 -13.56491 -13.50165 -13.29955 -13.19877 -13.00634 -12.98047 -12.92488 -12.80350 -12.58371 -12.46025 -12.39517 -12.38492 -12.17139 -12.10945 -11.93426 -11.41440 -11.40767 -11.10892 -10.71758 -10.21431 -9.96743 -9.89561 -9.72042 -9.17947 -8.42974 -5.91424 1.41717 1.44451 1.44972 1.54678 1.59228 1.81685 2.06304 2.30186 2.72549 3.22860 3.25026 3.26982 3.45209 3.47272 3.59374 3.67437 3.77813 3.95977 3.98732 4.05275 4.13409 4.24709 4.29598 4.35630 4.40380 4.41580 4.45992 4.52687 4.57447 4.65937 4.71350 4.74048 4.77248 4.78815 4.86218 4.90521 4.94714 4.98380 5.03914 5.11666 5.12697 5.15861 5.23820 5.29356 5.44642 5.74061 5.77305 5.85323 6.06878 6.08232 6.48257 6.63059 7.11324 7.16198 7.58705 8.12897 8.74017 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013020 B = 0.003411 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.014684 B = 8205.786391 C = 9322.052984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.074 4.074 3 C 0.546 3.454 4 O -0.569 6.569 5 N -0.614 5.614 6 C 0.059 3.941 7 C 0.059 3.941 8 H 0.125 0.875 9 C -0.118 4.118 10 C 0.111 3.889 11 H 0.132 0.868 12 C 0.030 3.970 13 N -0.504 5.504 14 C 0.043 3.957 15 C 0.447 3.553 16 O -0.607 6.607 17 N -0.572 5.572 18 C -0.327 4.327 19 H 0.083 0.917 20 C -0.011 4.011 21 N -0.921 5.921 22 Si 0.988 3.012 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.067 4.067 27 C -0.146 4.146 28 C -0.169 4.169 29 C -0.090 4.090 30 C -0.110 4.110 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.393 0.607 43 H 0.276 0.724 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.090 0.910 49 H 0.056 0.944 50 H 0.075 0.925 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.786 -5.264 5.612 18.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 C 0.336 3.664 4 O -0.448 6.448 5 N -0.348 5.348 6 C -0.064 4.064 7 C -0.049 4.049 8 H 0.143 0.857 9 C -0.157 4.157 10 C 0.008 3.992 11 H 0.150 0.850 12 C -0.099 4.099 13 N -0.228 5.228 14 C -0.089 4.089 15 C 0.234 3.766 16 O -0.493 6.493 17 N -0.209 5.209 18 C -0.457 4.457 19 H 0.101 0.899 20 C -0.211 4.211 21 N -0.562 5.562 22 Si 0.812 3.188 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.104 4.104 27 C -0.164 4.164 28 C -0.187 4.187 29 C -0.127 4.127 30 C -0.147 4.147 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.123 0.877 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.227 0.773 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.117 0.883 46 H 0.126 0.874 47 H 0.127 0.873 48 H 0.109 0.891 49 H 0.074 0.926 50 H 0.094 0.906 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.164 -4.554 5.219 18.509 hybrid contribution -0.985 -0.845 0.515 1.396 sum 16.180 -5.399 5.734 17.995 Atomic orbital electron populations 1.22052 0.92154 1.03874 1.02576 1.20866 0.96938 0.90940 0.98944 1.20464 0.79310 0.87094 0.79517 1.90651 1.38640 1.78515 1.37021 1.49274 1.43358 1.14545 1.27587 1.23572 0.92965 1.00429 0.89439 1.24742 0.94340 0.88062 0.97725 0.85698 1.23904 0.94446 1.03805 0.93496 1.24116 0.97416 0.80791 0.96894 0.85027 1.23764 0.92591 1.01334 0.92177 1.64758 1.00869 1.41524 1.15697 1.22060 0.91362 1.00548 0.94899 1.20433 0.83348 0.81947 0.90825 1.90468 1.73374 1.57979 1.27439 1.41912 1.16993 1.52762 1.09250 1.19613 0.97483 1.39561 0.89002 0.89909 1.25984 0.97397 0.97266 1.00449 1.69677 1.17483 1.46256 1.22773 0.85051 0.77343 0.78618 0.77743 1.19237 1.19982 1.20049 1.20369 0.93876 1.00247 0.95926 1.22014 0.96043 1.00308 0.98081 1.22058 0.99925 1.02065 0.94695 1.20450 0.94794 1.01225 0.96252 1.21810 0.95606 1.01521 0.95746 0.89503 0.93155 0.91766 0.89519 0.90820 0.87742 0.88723 0.92835 0.87682 0.91765 0.88204 0.77335 0.91460 0.91602 0.88315 0.87399 0.87348 0.89148 0.92574 0.90638 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 7.94 71.98 0.57 -2.71 16 2 C -0.07 -1.63 0.51 -52.79 -0.03 -1.66 16 3 C 0.55 14.61 4.86 87.66 0.43 15.04 16 4 O -0.57 -18.57 15.48 -3.03 -0.05 -18.62 16 5 N -0.61 -15.18 2.93 -768.43 -2.26 -17.44 16 6 C 0.06 1.54 4.11 87.16 0.36 1.90 16 7 C 0.06 1.69 4.18 46.84 0.20 1.89 16 8 H 0.13 4.34 6.49 -2.39 -0.02 4.33 16 9 C -0.12 -2.53 6.80 33.46 0.23 -2.30 16 10 C 0.11 2.51 5.23 46.93 0.25 2.76 16 11 H 0.13 2.83 8.08 -2.39 -0.02 2.81 16 12 C 0.03 0.73 6.28 87.08 0.55 1.28 16 13 N -0.50 -15.35 5.13 -844.23 -4.34 -19.68 16 14 C 0.04 1.44 4.67 85.55 0.40 1.84 16 15 C 0.45 19.85 7.29 87.65 0.64 20.49 16 16 O -0.61 -30.64 13.84 -3.08 -0.04 -30.69 16 17 N -0.57 -27.77 5.28 -306.98 -1.62 -29.39 16 18 C -0.33 -17.59 9.66 84.04 0.81 -16.77 16 19 H 0.08 4.69 7.20 -2.91 -0.02 4.67 16 20 C -0.01 -0.57 5.50 84.92 0.47 -0.10 16 21 N -0.92 -48.32 13.06 21.66 0.28 -48.04 16 22 Si 0.99 41.38 29.55 68.60 2.03 43.41 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 24 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 25 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 26 C -0.07 -1.40 4.55 29.66 0.13 -1.27 16 27 C -0.15 -3.08 8.87 27.05 0.24 -2.84 16 28 C -0.17 -3.43 9.56 27.05 0.26 -3.17 16 29 C -0.09 -1.72 5.59 29.66 0.17 -1.55 16 30 C -0.11 -2.08 4.73 30.73 0.15 -1.94 16 31 H 0.09 1.60 7.95 -2.39 -0.02 1.58 16 32 H 0.05 1.19 8.07 -2.39 -0.02 1.17 16 33 H 0.06 1.53 5.02 -2.38 -0.01 1.52 16 34 H 0.09 2.05 5.61 -2.39 -0.01 2.04 16 35 H 0.07 2.16 3.20 -2.39 -0.01 2.15 16 36 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.39 7.61 -2.39 -0.02 1.37 16 39 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 40 H 0.06 2.03 5.71 -2.39 -0.01 2.02 16 41 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 42 H 0.39 18.51 7.92 -92.71 -0.73 17.78 16 43 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 44 H 0.07 1.55 7.81 -2.39 -0.02 1.53 16 45 H 0.10 1.65 7.97 -2.39 -0.02 1.63 16 46 H 0.11 2.06 8.06 -2.91 -0.02 2.04 16 47 H 0.11 1.94 8.06 -2.91 -0.02 1.92 16 48 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 49 H 0.06 1.23 7.41 -2.39 -0.02 1.21 16 50 H 0.08 1.45 5.20 -2.39 -0.01 1.44 16 51 H 0.09 1.50 8.12 -2.39 -0.02 1.48 16 Total: -1.00 -64.71 381.44 0.04 -64.66 By element: Atomic # 1 Polarization: 44.68 SS G_CDS: 0.23 Total: 44.91 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 5.81 Total: 10.88 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -7.93 Total: -114.56 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -0.09 Total: -49.31 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -64.71 0.04 -64.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494656718.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.493 kcal (2) G-P(sol) polarization free energy of solvation -64.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds