Wall clock time and date at job start Wed Apr 1 2020 04:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.64003 * 2 1 4 4 O 1.21281 * 119.99336 * 119.67332 * 3 2 1 5 5 N 1.34771 * 120.00490 * 299.67843 * 3 2 1 6 6 C 1.47868 * 126.92390 * 4.57988 * 5 3 2 7 7 C 1.56007 * 105.11707 * 181.81263 * 6 5 3 8 8 H 1.09003 * 116.81703 * 159.43577 * 7 6 5 9 9 C 1.57084 * 99.46772 * 33.16598 * 7 6 5 10 10 C 1.49274 * 126.92865 * 184.89779 * 5 3 2 11 11 H 1.09006 * 116.12450 * 15.99768 * 10 5 3 12 12 C 1.56013 * 104.13036 * 246.88858 * 10 5 3 13 13 N 1.48287 * 105.06675 * 288.79652 * 12 10 5 14 14 C 1.46902 * 111.00076 * 122.54190 * 13 12 10 15 15 C 1.50699 * 109.47220 * 188.49277 * 14 13 12 16 16 O 1.21287 * 120.00019 * 352.90890 * 15 14 13 17 17 N 1.34774 * 119.99933 * 172.91067 * 15 14 13 18 18 C 1.37092 * 120.00026 * 184.79343 * 17 15 14 19 19 H 1.08008 * 119.99883 * 5.42236 * 18 17 15 20 20 C 1.38952 * 120.00257 * 185.41813 * 18 17 15 21 21 N 1.31417 * 119.99647 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00101 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47497 * 60.00328 * 22 20 18 24 24 H 1.48504 * 109.47043 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47127 * 299.99718 * 22 20 18 26 26 C 1.53191 * 109.83890 * 239.32184 * 2 1 3 27 27 C 1.50070 * 110.05855 * 290.05981 * 26 2 1 28 28 C 1.29444 * 124.07432 * 342.43333 * 27 26 2 29 29 C 1.50074 * 124.07738 * 0.73110 * 28 27 26 30 30 C 1.53019 * 110.14549 * 342.86637 * 29 28 27 31 31 H 1.08997 * 109.47114 * 306.07514 * 1 2 3 32 32 H 1.09002 * 109.46836 * 66.07175 * 1 2 3 33 33 H 1.09000 * 109.46802 * 186.06994 * 1 2 3 34 34 H 1.08996 * 110.31052 * 300.84529 * 6 5 3 35 35 H 1.09000 * 110.31260 * 63.02992 * 6 5 3 36 36 H 1.09008 * 112.35337 * 191.54691 * 9 7 6 37 37 H 1.08997 * 112.35926 * 64.13550 * 9 7 6 38 38 H 1.08992 * 110.32146 * 47.69181 * 12 10 5 39 39 H 1.08997 * 110.32560 * 169.79458 * 12 10 5 40 40 H 1.09000 * 109.47147 * 308.49552 * 14 13 12 41 41 H 1.09007 * 109.46500 * 68.49234 * 14 13 12 42 42 H 0.97007 * 119.99807 * 4.78969 * 17 15 14 43 43 H 0.97000 * 119.99488 * 179.97438 * 21 20 18 44 44 H 1.08994 * 109.54198 * 169.79241 * 26 2 1 45 45 H 1.09001 * 109.25663 * 50.14995 * 26 2 1 46 46 H 1.07991 * 117.96387 * 162.71528 * 27 26 2 47 47 H 1.08003 * 117.96160 * 180.70543 * 28 27 26 48 48 H 1.08997 * 109.35684 * 103.07646 * 29 28 27 49 49 H 1.08995 * 109.35761 * 222.79984 * 29 28 27 50 50 H 1.08998 * 109.64289 * 169.12152 * 30 29 28 51 51 H 1.09001 * 109.64786 * 289.54229 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0365 1.4194 0.0000 4 8 2.7301 1.8156 0.9127 5 7 1.7188 2.2483 -1.0140 6 6 0.8144 1.9593 -2.1476 7 6 0.8504 3.2425 -3.0342 8 1 0.5415 3.1309 -4.0735 9 6 2.3373 3.6850 -2.7879 10 6 2.2140 3.6410 -1.2227 11 1 3.0932 3.9292 -0.6462 12 6 0.9450 4.5287 -1.0344 13 7 0.1106 4.2673 -2.2320 14 6 -1.2201 3.7764 -1.8495 15 6 -1.9626 3.3260 -3.0812 16 8 -1.4897 3.5236 -4.1805 17 7 -3.1520 2.7038 -2.9612 18 6 -3.7809 2.2068 -4.0733 19 1 -3.2848 2.2353 -5.0323 20 6 -5.0566 1.6662 -3.9669 21 7 -5.6599 1.6310 -2.8000 22 14 -5.9131 0.9884 -5.4822 23 1 -5.1028 -0.1153 -6.0569 24 1 -7.2539 0.4738 -5.1043 25 1 -6.0642 2.0684 -6.4902 26 6 2.0499 -0.7352 -1.2393 27 6 1.7698 -2.2048 -1.1212 28 6 1.4813 -2.8011 -0.0091 29 6 1.3713 -2.1035 1.3151 30 6 2.0457 -0.7316 1.2457 31 1 -0.3633 0.6051 0.8306 32 1 -0.3633 0.4168 -0.9394 33 1 -0.3633 -1.0219 0.1087 34 1 1.1758 1.0983 -2.7099 35 1 -0.1984 1.7790 -1.7872 36 1 2.5378 4.6899 -3.1599 37 1 3.0548 2.9578 -3.1680 38 1 0.4106 4.2382 -0.1300 39 1 1.2231 5.5816 -0.9873 40 1 -1.1140 2.9372 -1.1621 41 1 -1.7765 4.5771 -1.3623 42 1 -3.5631 2.6075 -2.0878 43 1 -6.5506 1.2540 -2.7258 44 1 3.1245 -0.5786 -1.3321 45 1 1.5517 -0.3425 -2.1257 46 1 1.8160 -2.8029 -2.0192 47 1 1.3087 -3.8669 -0.0359 48 1 0.3193 -1.9765 1.5702 49 1 1.8590 -2.7051 2.0820 50 1 1.7979 -0.1560 2.1375 51 1 3.1264 -0.8574 1.1794 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494656719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:05 Heat of formation + Delta-G solvation = -4.666095 kcal Electronic energy + Delta-G solvation = -32955.062397 eV Core-core repulsion = 28856.013280 eV Total energy + Delta-G solvation = -4099.049117 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.52709 -39.88158 -38.08687 -37.49144 -34.26682 -33.74531 -32.57397 -31.39978 -31.12511 -30.32602 -29.70976 -27.30250 -26.59653 -25.32925 -24.27420 -23.49621 -22.72248 -20.92445 -20.40845 -19.32509 -18.75215 -17.90437 -17.61036 -16.96311 -16.59455 -16.32816 -15.81309 -15.36868 -15.02052 -14.73695 -14.58377 -14.44376 -13.93417 -13.91660 -13.73829 -13.51621 -13.16989 -13.07431 -12.87624 -12.72779 -12.43675 -12.32082 -12.10973 -11.88659 -11.73955 -11.71894 -11.57582 -11.42740 -11.34294 -11.12086 -11.04077 -10.98541 -10.85951 -10.69119 -10.48962 -10.38070 -10.28701 -9.63263 -9.52253 -9.13753 -8.68285 -8.40764 -8.05579 -7.95126 -6.47850 -3.89479 2.15065 2.60027 2.83247 3.14954 3.22206 3.25648 3.80621 3.91510 4.15700 4.23127 4.38659 4.50905 4.52316 4.65905 4.71942 4.89784 4.98774 5.00697 5.02846 5.12071 5.17452 5.18187 5.21989 5.32801 5.34242 5.46019 5.52754 5.61723 5.64502 5.68722 5.73639 5.75669 5.79111 5.81256 5.87031 5.90723 5.91675 5.99247 6.06865 6.08754 6.16236 6.20507 6.29667 6.40189 6.50963 6.79748 6.96730 7.14807 7.48518 7.52165 7.98508 8.12889 8.53770 9.10856 9.46046 9.96676 10.69380 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009720 B = 0.003957 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.049863 B = 7074.021443 C = 8981.941732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.072 4.072 3 C 0.543 3.457 4 O -0.546 6.546 5 N -0.616 5.616 6 C 0.050 3.950 7 C 0.070 3.930 8 H 0.157 0.843 9 C -0.138 4.138 10 C 0.108 3.892 11 H 0.123 0.877 12 C 0.025 3.975 13 N -0.492 5.492 14 C 0.031 3.969 15 C 0.441 3.559 16 O -0.579 6.579 17 N -0.560 5.560 18 C -0.301 4.301 19 H 0.103 0.897 20 C 0.025 3.975 21 N -0.899 5.899 22 Si 0.929 3.071 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.084 4.084 27 C -0.149 4.149 28 C -0.156 4.156 29 C -0.093 4.093 30 C -0.093 4.093 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.392 0.608 43 H 0.273 0.727 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.078 0.922 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.227 -4.492 6.663 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.075 4.075 3 C 0.332 3.668 4 O -0.423 6.423 5 N -0.351 5.351 6 C -0.073 4.073 7 C -0.038 4.038 8 H 0.174 0.826 9 C -0.177 4.177 10 C 0.005 3.995 11 H 0.141 0.859 12 C -0.104 4.104 13 N -0.216 5.216 14 C -0.101 4.101 15 C 0.226 3.774 16 O -0.464 6.464 17 N -0.196 5.196 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.177 4.177 21 N -0.540 5.540 22 Si 0.756 3.244 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.121 4.121 27 C -0.167 4.167 28 C -0.174 4.174 29 C -0.130 4.130 30 C -0.130 4.130 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.225 0.775 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.097 0.903 49 H 0.091 0.909 50 H 0.092 0.908 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.620 -3.829 6.261 16.359 hybrid contribution -0.902 -1.251 0.349 1.582 sum 13.718 -5.081 6.610 16.053 Atomic orbital electron populations 1.22112 0.92099 1.03621 1.03145 1.20796 0.97633 0.91227 0.97855 1.20246 0.79471 0.86630 0.80405 1.90665 1.39363 1.77264 1.35051 1.49303 1.46635 1.14751 1.24365 1.23746 0.94718 1.00596 0.88283 1.24966 0.91882 0.87306 0.99639 0.82587 1.24008 0.96897 1.02931 0.93844 1.24058 0.97279 0.81465 0.96726 0.85905 1.23745 0.93448 1.00116 0.93072 1.64762 1.00860 1.40376 1.15563 1.22212 0.91146 0.99625 0.97097 1.19653 0.84003 0.83882 0.89828 1.90462 1.68740 1.59857 1.27335 1.41867 1.17593 1.49655 1.10511 1.19624 0.98223 1.35288 0.89869 0.87953 1.25266 0.96619 0.97751 0.98068 1.69607 1.15277 1.45591 1.23495 0.85943 0.78180 0.79237 0.81026 1.19899 1.20973 1.19833 1.20649 1.01267 0.93018 0.97170 1.21948 1.01020 0.95628 0.98079 1.22047 1.01253 0.99568 0.94562 1.20548 1.01424 0.95450 0.95572 1.21429 1.00298 0.94841 0.96481 0.92278 0.91119 0.90591 0.90489 0.89337 0.88677 0.90125 0.92239 0.89372 0.93156 0.89169 0.77532 0.91748 0.90663 0.89763 0.87568 0.87878 0.90336 0.90906 0.90838 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 7.65 37.16 0.28 -1.60 16 2 C -0.07 -0.87 0.49 -155.36 -0.08 -0.95 16 3 C 0.54 7.75 6.60 -10.99 -0.07 7.67 16 4 O -0.55 -9.29 16.26 5.56 0.09 -9.20 16 5 N -0.62 -8.17 2.93 -156.81 -0.46 -8.63 16 6 C 0.05 0.68 4.19 -1.68 -0.01 0.68 16 7 C 0.07 1.03 4.08 -62.32 -0.25 0.78 16 8 H 0.16 2.70 6.31 -51.93 -0.33 2.37 16 9 C -0.14 -1.62 6.80 -22.31 -0.15 -1.77 16 10 C 0.11 1.33 5.23 -62.57 -0.33 1.00 16 11 H 0.12 1.44 8.08 -51.93 -0.42 1.02 16 12 C 0.03 0.33 6.27 -1.45 -0.01 0.32 16 13 N -0.49 -7.70 5.20 -218.18 -1.13 -8.83 16 14 C 0.03 0.53 4.74 -4.98 -0.02 0.50 16 15 C 0.44 9.62 7.05 -10.99 -0.08 9.54 16 16 O -0.58 -14.20 13.59 5.55 0.08 -14.13 16 17 N -0.56 -13.34 5.28 -10.96 -0.06 -13.39 16 18 C -0.30 -7.91 9.66 -14.94 -0.14 -8.06 16 19 H 0.10 2.81 7.19 -52.48 -0.38 2.43 16 20 C 0.03 0.65 5.50 -17.46 -0.10 0.55 16 21 N -0.90 -23.60 13.06 55.50 0.72 -22.88 16 22 Si 0.93 20.27 29.55 -169.99 -5.02 15.25 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 26 C -0.08 -0.93 4.58 -28.09 -0.13 -1.06 16 27 C -0.15 -1.51 9.46 -35.90 -0.34 -1.85 16 28 C -0.16 -1.51 9.18 -35.90 -0.33 -1.84 16 29 C -0.09 -0.88 5.48 -28.18 -0.15 -1.04 16 30 C -0.09 -1.05 4.33 -26.52 -0.11 -1.17 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.94 4.78 -51.93 -0.25 0.70 16 33 H 0.08 0.88 5.50 -51.93 -0.29 0.59 16 34 H 0.08 0.98 5.52 -51.93 -0.29 0.69 16 35 H 0.09 1.36 3.05 -51.93 -0.16 1.20 16 36 H 0.09 1.05 8.14 -51.92 -0.42 0.62 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.82 7.56 -51.93 -0.39 0.42 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.82 5.85 -51.93 -0.30 0.51 16 41 H 0.09 1.48 8.14 -51.92 -0.42 1.05 16 42 H 0.39 9.07 7.92 -40.82 -0.32 8.75 16 43 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 44 H 0.08 0.83 8.11 -51.93 -0.42 0.40 16 45 H 0.08 0.94 5.09 -51.93 -0.26 0.68 16 46 H 0.11 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.10 0.87 8.06 -52.48 -0.42 0.44 16 48 H 0.08 0.73 6.79 -51.93 -0.35 0.38 16 49 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.07 0.89 7.89 -51.93 -0.41 0.48 16 51 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 LS Contribution 379.52 15.07 5.72 5.72 Total: -1.00 -29.83 379.52 -9.60 -39.42 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -7.51 Total: 14.95 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -2.02 Total: 1.72 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.93 Total: -53.73 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.17 Total: -23.33 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.83 -9.60 -39.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494656719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.757 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds