Wall clock time and date at job start Wed Apr 1 2020 04:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.64003 * 2 1 4 4 O 1.21281 * 119.99336 * 119.67332 * 3 2 1 5 5 N 1.34771 * 120.00490 * 299.67843 * 3 2 1 6 6 C 1.47868 * 126.92390 * 4.57988 * 5 3 2 7 7 C 1.56007 * 105.11707 * 181.81263 * 6 5 3 8 8 H 1.09003 * 116.81703 * 159.43577 * 7 6 5 9 9 C 1.57084 * 99.46772 * 33.16598 * 7 6 5 10 10 C 1.49274 * 126.92865 * 184.89779 * 5 3 2 11 11 H 1.09006 * 116.12450 * 15.99768 * 10 5 3 12 12 C 1.56013 * 104.13036 * 246.88858 * 10 5 3 13 13 N 1.48287 * 105.06675 * 288.79652 * 12 10 5 14 14 C 1.46902 * 111.00076 * 122.54190 * 13 12 10 15 15 C 1.50699 * 109.47220 * 188.49277 * 14 13 12 16 16 O 1.21287 * 120.00019 * 352.90890 * 15 14 13 17 17 N 1.34774 * 119.99933 * 172.91067 * 15 14 13 18 18 C 1.37092 * 120.00026 * 184.79343 * 17 15 14 19 19 H 1.08008 * 119.99883 * 5.42236 * 18 17 15 20 20 C 1.38952 * 120.00257 * 185.41813 * 18 17 15 21 21 N 1.31417 * 119.99647 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00101 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47497 * 60.00328 * 22 20 18 24 24 H 1.48504 * 109.47043 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47127 * 299.99718 * 22 20 18 26 26 C 1.53191 * 109.83890 * 239.32184 * 2 1 3 27 27 C 1.50070 * 110.05855 * 290.05981 * 26 2 1 28 28 C 1.29444 * 124.07432 * 342.43333 * 27 26 2 29 29 C 1.50074 * 124.07738 * 0.73110 * 28 27 26 30 30 C 1.53019 * 110.14549 * 342.86637 * 29 28 27 31 31 H 1.08997 * 109.47114 * 306.07514 * 1 2 3 32 32 H 1.09002 * 109.46836 * 66.07175 * 1 2 3 33 33 H 1.09000 * 109.46802 * 186.06994 * 1 2 3 34 34 H 1.08996 * 110.31052 * 300.84529 * 6 5 3 35 35 H 1.09000 * 110.31260 * 63.02992 * 6 5 3 36 36 H 1.09008 * 112.35337 * 191.54691 * 9 7 6 37 37 H 1.08997 * 112.35926 * 64.13550 * 9 7 6 38 38 H 1.08992 * 110.32146 * 47.69181 * 12 10 5 39 39 H 1.08997 * 110.32560 * 169.79458 * 12 10 5 40 40 H 1.09000 * 109.47147 * 308.49552 * 14 13 12 41 41 H 1.09007 * 109.46500 * 68.49234 * 14 13 12 42 42 H 0.97007 * 119.99807 * 4.78969 * 17 15 14 43 43 H 0.97000 * 119.99488 * 179.97438 * 21 20 18 44 44 H 1.08994 * 109.54198 * 169.79241 * 26 2 1 45 45 H 1.09001 * 109.25663 * 50.14995 * 26 2 1 46 46 H 1.07991 * 117.96387 * 162.71528 * 27 26 2 47 47 H 1.08003 * 117.96160 * 180.70543 * 28 27 26 48 48 H 1.08997 * 109.35684 * 103.07646 * 29 28 27 49 49 H 1.08995 * 109.35761 * 222.79984 * 29 28 27 50 50 H 1.08998 * 109.64289 * 169.12152 * 30 29 28 51 51 H 1.09001 * 109.64786 * 289.54229 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0365 1.4194 0.0000 4 8 2.7301 1.8156 0.9127 5 7 1.7188 2.2483 -1.0140 6 6 0.8144 1.9593 -2.1476 7 6 0.8504 3.2425 -3.0342 8 1 0.5415 3.1309 -4.0735 9 6 2.3373 3.6850 -2.7879 10 6 2.2140 3.6410 -1.2227 11 1 3.0932 3.9292 -0.6462 12 6 0.9450 4.5287 -1.0344 13 7 0.1106 4.2673 -2.2320 14 6 -1.2201 3.7764 -1.8495 15 6 -1.9626 3.3260 -3.0812 16 8 -1.4897 3.5236 -4.1805 17 7 -3.1520 2.7038 -2.9612 18 6 -3.7809 2.2068 -4.0733 19 1 -3.2848 2.2353 -5.0323 20 6 -5.0566 1.6662 -3.9669 21 7 -5.6599 1.6310 -2.8000 22 14 -5.9131 0.9884 -5.4822 23 1 -5.1028 -0.1153 -6.0569 24 1 -7.2539 0.4738 -5.1043 25 1 -6.0642 2.0684 -6.4902 26 6 2.0499 -0.7352 -1.2393 27 6 1.7698 -2.2048 -1.1212 28 6 1.4813 -2.8011 -0.0091 29 6 1.3713 -2.1035 1.3151 30 6 2.0457 -0.7316 1.2457 31 1 -0.3633 0.6051 0.8306 32 1 -0.3633 0.4168 -0.9394 33 1 -0.3633 -1.0219 0.1087 34 1 1.1758 1.0983 -2.7099 35 1 -0.1984 1.7790 -1.7872 36 1 2.5378 4.6899 -3.1599 37 1 3.0548 2.9578 -3.1680 38 1 0.4106 4.2382 -0.1300 39 1 1.2231 5.5816 -0.9873 40 1 -1.1140 2.9372 -1.1621 41 1 -1.7765 4.5771 -1.3623 42 1 -3.5631 2.6075 -2.0878 43 1 -6.5506 1.2540 -2.7258 44 1 3.1245 -0.5786 -1.3321 45 1 1.5517 -0.3425 -2.1257 46 1 1.8160 -2.8029 -2.0192 47 1 1.3087 -3.8669 -0.0359 48 1 0.3193 -1.9765 1.5702 49 1 1.8590 -2.7051 2.0820 50 1 1.7979 -0.1560 2.1375 51 1 3.1264 -0.8574 1.1794 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494656719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:03 Heat of formation + Delta-G solvation = -23.807186 kcal Electronic energy + Delta-G solvation = -32955.892417 eV Core-core repulsion = 28856.013280 eV Total energy + Delta-G solvation = -4099.879137 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.65311 -40.97697 -39.71507 -38.64022 -36.01323 -35.10401 -33.63310 -33.20638 -32.12723 -31.37586 -30.82636 -28.27517 -28.12392 -26.45826 -25.94822 -24.39580 -23.74887 -22.01228 -21.58335 -20.93084 -20.01685 -19.65096 -18.55950 -18.00710 -17.81070 -17.57694 -17.19389 -16.67646 -16.34702 -16.03529 -15.87590 -15.61532 -15.54095 -15.11407 -14.96694 -14.63717 -14.28479 -14.11525 -14.03969 -13.85556 -13.76124 -13.49474 -13.29897 -13.11329 -12.99326 -12.95813 -12.79808 -12.72044 -12.60405 -12.40760 -12.39392 -12.20007 -12.11504 -11.94792 -11.92607 -11.62349 -11.40953 -11.27538 -10.72415 -10.20025 -9.97211 -9.91920 -9.82085 -9.20241 -8.43556 -5.91979 1.37624 1.41093 1.44499 1.48390 1.54164 1.75790 2.05071 2.29655 2.72326 3.19400 3.22813 3.24467 3.43134 3.44674 3.56847 3.71253 3.77908 3.95208 3.97390 4.03379 4.13334 4.17510 4.30526 4.34575 4.35477 4.39991 4.48182 4.49675 4.56243 4.61863 4.68162 4.72123 4.75746 4.80472 4.83139 4.90147 4.93922 4.98674 5.02143 5.09405 5.15528 5.19083 5.23911 5.32801 5.44199 5.74246 5.75737 5.84305 6.02595 6.07346 6.40738 6.62048 7.00537 7.15393 7.57540 8.11572 8.73435 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009720 B = 0.003957 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.049863 B = 7074.021443 C = 8981.941732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.069 4.069 3 C 0.541 3.459 4 O -0.575 6.575 5 N -0.612 5.612 6 C 0.060 3.940 7 C 0.059 3.941 8 H 0.129 0.871 9 C -0.120 4.120 10 C 0.109 3.891 11 H 0.135 0.865 12 C 0.029 3.971 13 N -0.504 5.504 14 C 0.043 3.957 15 C 0.446 3.554 16 O -0.606 6.606 17 N -0.571 5.571 18 C -0.327 4.327 19 H 0.083 0.917 20 C -0.011 4.011 21 N -0.921 5.921 22 Si 0.988 3.012 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.274 1.274 26 C -0.080 4.080 27 C -0.162 4.162 28 C -0.154 4.154 29 C -0.091 4.091 30 C -0.090 4.090 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.108 0.892 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.393 0.607 43 H 0.276 0.724 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.117 0.883 47 H 0.120 0.880 48 H 0.081 0.919 49 H 0.089 0.911 50 H 0.062 0.938 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.969 -5.190 6.929 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C 0.331 3.669 4 O -0.455 6.455 5 N -0.346 5.346 6 C -0.064 4.064 7 C -0.049 4.049 8 H 0.147 0.853 9 C -0.158 4.158 10 C 0.006 3.994 11 H 0.153 0.847 12 C -0.099 4.099 13 N -0.228 5.228 14 C -0.088 4.088 15 C 0.233 3.767 16 O -0.492 6.492 17 N -0.208 5.208 18 C -0.456 4.456 19 H 0.101 0.899 20 C -0.211 4.211 21 N -0.562 5.562 22 Si 0.812 3.188 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.117 4.117 27 C -0.180 4.180 28 C -0.172 4.172 29 C -0.128 4.128 30 C -0.128 4.128 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.126 0.874 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.226 0.774 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.135 0.865 47 H 0.138 0.862 48 H 0.100 0.900 49 H 0.108 0.892 50 H 0.081 0.919 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.370 -4.518 6.529 17.299 hybrid contribution -1.075 -0.974 0.277 1.477 sum 14.295 -5.492 6.806 16.758 Atomic orbital electron populations 1.22055 0.92297 1.03900 1.02178 1.20802 0.97287 0.90231 0.98921 1.20618 0.78962 0.87380 0.79955 1.90648 1.40811 1.77945 1.36066 1.49317 1.46165 1.15158 1.23919 1.23574 0.94024 1.00546 0.88230 1.24801 0.93915 0.87879 0.98295 0.85319 1.23946 0.94750 1.03930 0.93206 1.24186 0.97288 0.80655 0.97259 0.84699 1.23784 0.93146 1.01412 0.91576 1.64787 1.00532 1.40593 1.16886 1.22055 0.91800 1.00283 0.94652 1.20417 0.83169 0.82132 0.90954 1.90452 1.69196 1.60426 1.29101 1.41918 1.18375 1.50548 1.09990 1.19610 0.99082 1.36907 0.90003 0.89863 1.25986 0.96743 0.97624 1.00717 1.69678 1.15594 1.46033 1.24862 0.85052 0.77411 0.78557 0.77748 1.19296 1.19984 1.19985 1.20597 1.01109 0.93718 0.96278 1.22024 1.01958 0.95083 0.98912 1.22237 1.00302 1.00454 0.94229 1.20568 1.01545 0.94476 0.96210 1.21400 1.00112 0.95751 0.95550 0.92834 0.92350 0.89741 0.89560 0.90958 0.87491 0.88722 0.92832 0.87380 0.92075 0.88068 0.77352 0.91459 0.90696 0.90205 0.86493 0.86183 0.90038 0.89212 0.91906 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 7.65 71.98 0.55 -3.01 16 2 C -0.07 -1.63 0.49 -52.73 -0.03 -1.66 16 3 C 0.54 15.04 6.60 87.66 0.58 15.62 16 4 O -0.57 -19.20 16.26 -3.03 -0.05 -19.25 16 5 N -0.61 -15.64 2.93 -768.43 -2.25 -17.89 16 6 C 0.06 1.61 4.19 87.16 0.37 1.98 16 7 C 0.06 1.72 4.08 46.84 0.19 1.91 16 8 H 0.13 4.55 6.31 -2.39 -0.02 4.53 16 9 C -0.12 -2.58 6.80 33.46 0.23 -2.36 16 10 C 0.11 2.48 5.23 46.93 0.25 2.73 16 11 H 0.14 2.85 8.08 -2.38 -0.02 2.83 16 12 C 0.03 0.71 6.27 87.08 0.55 1.26 16 13 N -0.50 -15.34 5.20 -844.19 -4.39 -19.73 16 14 C 0.04 1.48 4.74 85.56 0.41 1.88 16 15 C 0.45 19.78 7.05 87.66 0.62 20.40 16 16 O -0.61 -30.38 13.59 -3.05 -0.04 -30.42 16 17 N -0.57 -27.78 5.28 -306.99 -1.62 -29.40 16 18 C -0.33 -17.54 9.66 84.04 0.81 -16.73 16 19 H 0.08 4.71 7.19 -2.91 -0.02 4.69 16 20 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 21 N -0.92 -48.39 13.06 21.66 0.28 -48.11 16 22 Si 0.99 41.43 29.55 68.60 2.03 43.46 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 26 C -0.08 -1.69 4.58 29.71 0.14 -1.55 16 27 C -0.16 -3.04 9.46 27.04 0.26 -2.78 16 28 C -0.15 -2.67 9.18 27.04 0.25 -2.42 16 29 C -0.09 -1.57 5.48 29.66 0.16 -1.41 16 30 C -0.09 -1.97 4.33 30.73 0.13 -1.84 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.56 4.78 -2.39 -0.01 1.55 16 33 H 0.08 1.88 5.50 -2.39 -0.01 1.86 16 34 H 0.09 2.17 5.52 -2.39 -0.01 2.16 16 35 H 0.07 2.23 3.05 -2.39 -0.01 2.22 16 36 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.39 7.56 -2.39 -0.02 1.37 16 39 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.06 1.97 5.85 -2.39 -0.01 1.95 16 41 H 0.10 3.23 8.14 -2.38 -0.02 3.21 16 42 H 0.39 18.57 7.92 -92.70 -0.73 17.84 16 43 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 44 H 0.07 1.57 8.11 -2.39 -0.02 1.55 16 45 H 0.08 1.73 5.09 -2.39 -0.01 1.72 16 46 H 0.12 1.93 8.06 -2.92 -0.02 1.91 16 47 H 0.12 1.69 8.06 -2.91 -0.02 1.66 16 48 H 0.08 1.38 6.79 -2.39 -0.02 1.36 16 49 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.06 1.50 7.89 -2.39 -0.02 1.48 16 51 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 Total: -1.00 -63.94 379.52 0.11 -63.83 By element: Atomic # 1 Polarization: 45.35 SS G_CDS: 0.23 Total: 45.58 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 5.92 Total: 11.93 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -7.98 Total: -115.13 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -0.09 Total: -49.67 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -63.94 0.11 -63.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494656719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.024 kcal (2) G-P(sol) polarization free energy of solvation -63.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds