Wall clock time and date at job start Wed Apr 1 2020 04:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 C 1.38256 * 119.99686 * 2 1 4 4 C 1.38216 * 119.99676 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99546 * 359.76954 * 4 3 2 6 6 C 1.38213 * 120.00231 * 0.46283 * 5 4 3 7 7 C 1.50701 * 119.99878 * 179.78860 * 6 5 4 8 8 C 1.50703 * 109.47064 * 269.72422 * 7 6 5 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47069 * 304.99442 * 12 11 10 14 14 C 1.52993 * 109.47345 * 65.00000 * 12 11 10 15 15 C 1.53006 * 109.46846 * 185.00008 * 12 11 10 16 16 N 1.46898 * 109.46975 * 174.99964 * 15 12 11 17 17 C 1.46895 * 111.00057 * 179.97438 * 16 15 12 18 18 C 1.50701 * 109.47427 * 179.97438 * 17 16 15 19 19 O 1.21288 * 119.99653 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00069 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00011 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00001 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00337 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99649 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00386 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46733 * 60.00051 * 25 23 21 27 27 H 1.48497 * 109.47551 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47324 * 300.00497 * 25 23 21 29 29 C 1.38205 * 119.99778 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47077 * 270.02408 * 1 2 3 31 31 H 1.09000 * 109.46444 * 30.01999 * 1 2 3 32 32 H 1.08990 * 109.47251 * 150.01965 * 1 2 3 33 33 H 1.07994 * 120.00721 * 359.97438 * 3 2 1 34 34 H 1.07993 * 119.99959 * 179.97438 * 4 3 2 35 35 H 1.08008 * 119.99998 * 180.25154 * 5 4 3 36 36 H 1.09002 * 109.47060 * 149.72458 * 7 6 5 37 37 H 1.09001 * 109.47380 * 29.72371 * 7 6 5 38 38 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 40 40 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 41 41 H 1.09002 * 109.47179 * 299.99584 * 14 12 11 42 42 H 1.08993 * 109.47639 * 59.99724 * 14 12 11 43 43 H 1.09004 * 109.47135 * 179.97438 * 14 12 11 44 44 H 1.09004 * 109.46746 * 294.99703 * 15 12 11 45 45 H 1.08998 * 109.47205 * 54.99872 * 15 12 11 46 46 H 1.00906 * 110.99977 * 303.94881 * 16 15 12 47 47 H 1.09008 * 109.47339 * 299.99885 * 17 16 15 48 48 H 1.09004 * 109.47187 * 59.99646 * 17 16 15 49 49 H 0.97001 * 120.00115 * 0.02562 * 20 18 17 50 50 H 0.97007 * 120.00193 * 179.97438 * 24 23 21 51 51 H 1.08005 * 119.99814 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 0.0059 6 6 3.5806 -1.1970 0.0010 7 6 4.3341 -2.5021 0.0021 8 6 4.5853 -2.9382 -1.4185 9 8 4.1917 -2.2562 -2.3408 10 7 5.2474 -4.0862 -1.6638 11 6 5.4921 -4.5099 -3.0447 12 6 6.2559 -5.8356 -3.0436 13 1 7.1663 -5.7299 -2.4537 14 6 5.3773 -6.9299 -2.4342 15 6 6.6203 -6.2153 -4.4803 16 7 7.4555 -7.4238 -4.4705 17 6 7.8251 -7.8193 -5.8361 18 6 8.6801 -9.0593 -5.7859 19 8 8.9541 -9.5642 -4.7176 20 7 9.1394 -9.6079 -6.9281 21 6 9.9167 -10.7363 -6.8825 22 1 10.1607 -11.1858 -5.9313 23 6 10.3907 -11.3016 -8.0600 24 7 10.0942 -10.7543 -9.2173 25 14 11.4504 -12.8386 -7.9978 26 1 10.6895 -13.9386 -7.3527 27 1 11.8246 -13.2381 -9.3782 28 1 12.6800 -12.5607 -7.2129 29 6 2.1981 -1.1969 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3632 0.8898 -0.5142 32 1 -0.3633 -0.8901 -0.5135 33 1 1.6584 2.1327 -0.0004 34 1 4.1205 2.1326 0.0001 35 1 5.3518 -0.0001 0.0104 36 1 3.7450 -3.2613 0.5165 37 1 5.2865 -2.3714 0.5158 38 1 5.5625 -4.6315 -0.9261 39 1 6.0818 -3.7508 -3.5587 40 1 4.5398 -4.6400 -3.5589 41 1 5.1177 -6.6594 -1.4107 42 1 4.4669 -7.0356 -3.0241 43 1 5.9213 -7.8745 -2.4339 44 1 5.7095 -6.4077 -5.0474 45 1 7.1710 -5.3968 -4.9439 46 1 8.2755 -7.2920 -3.8975 47 1 6.9225 -8.0230 -6.4123 48 1 8.3840 -7.0120 -6.3095 49 1 8.9199 -9.2044 -7.7825 50 1 10.4254 -11.1487 -10.0394 51 1 1.6580 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495729378.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:21 Heat of formation + Delta-G solvation = -91.863674 kcal Electronic energy + Delta-G solvation = -28339.107048 eV Core-core repulsion = 24236.276760 eV Total energy + Delta-G solvation = -4102.830288 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.09399 -40.18253 -39.86755 -38.23676 -36.17640 -35.62671 -34.43890 -33.45539 -33.16830 -32.77872 -29.32495 -28.70938 -27.74924 -27.23194 -26.35644 -24.39727 -23.07329 -22.10009 -21.64963 -21.12287 -20.71867 -19.88267 -18.09203 -17.79095 -17.45517 -17.02472 -16.95676 -16.75557 -16.50679 -16.09477 -15.97964 -15.65609 -15.39125 -15.24882 -15.12324 -14.66309 -14.46548 -14.33631 -14.08046 -13.92335 -13.79652 -13.57614 -13.40357 -13.24920 -13.13690 -13.01187 -12.84134 -12.75735 -12.70690 -12.42866 -12.12651 -12.00711 -11.99230 -11.88801 -11.83929 -11.70641 -11.49366 -10.96910 -10.33809 -10.06828 -10.01281 -9.67965 -9.46813 -9.29826 -8.46122 -5.95108 0.42677 0.51392 1.40396 1.42297 1.53250 1.67603 2.05918 2.19550 2.30633 2.87966 2.99438 3.21316 3.53767 3.68705 3.87567 3.90603 3.92558 4.05543 4.07899 4.15135 4.25447 4.33219 4.39502 4.48259 4.48802 4.51164 4.58361 4.62437 4.63610 4.66438 4.77886 4.82269 4.83194 4.85120 4.97978 4.99426 5.09981 5.20160 5.29042 5.31473 5.41003 5.47063 5.55410 5.57703 5.66185 5.71658 5.88743 6.10129 6.15462 6.42444 6.59040 6.60440 7.12789 7.29460 7.56728 8.11734 8.71023 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.037865 B = 0.001235 C = 0.001232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.288355 B =22660.275336 C =22715.827107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.136 4.136 4 C -0.126 4.126 5 C -0.130 4.130 6 C -0.075 4.075 7 C -0.097 4.097 8 C 0.511 3.489 9 O -0.582 6.582 10 N -0.716 5.716 11 C 0.132 3.868 12 C -0.086 4.086 13 H 0.085 0.915 14 C -0.136 4.136 15 C 0.066 3.934 16 N -0.676 5.676 17 C 0.065 3.935 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.080 0.920 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.271 1.271 29 C -0.125 4.125 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.416 0.584 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.039 0.961 46 H 0.345 0.655 47 H 0.102 0.898 48 H 0.065 0.935 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.001 22.866 19.621 34.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.154 4.154 4 C -0.144 4.144 5 C -0.148 4.148 6 C -0.075 4.075 7 C -0.136 4.136 8 C 0.299 3.701 9 O -0.462 6.462 10 N -0.369 5.369 11 C 0.008 3.992 12 C -0.105 4.105 13 H 0.103 0.897 14 C -0.193 4.193 15 C -0.064 4.064 16 N -0.308 5.308 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.508 6.508 20 N -0.211 5.211 21 C -0.466 4.466 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.196 1.196 29 C -0.143 4.143 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.253 0.747 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.057 0.943 46 H 0.163 0.837 47 H 0.120 0.880 48 H 0.083 0.917 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.584 22.516 19.486 34.083 hybrid contribution 1.331 -0.209 -0.834 1.584 sum -15.253 22.306 18.652 32.835 Atomic orbital electron populations 1.20823 0.89801 1.03246 1.03078 1.20227 0.97341 0.93174 0.99213 1.21321 0.94597 0.98214 1.01237 1.21388 0.94707 0.98603 0.99707 1.21236 1.00412 0.92395 1.00749 1.19522 0.93790 0.94539 0.99657 1.20741 1.03863 0.96025 0.93002 1.21052 0.76783 0.80277 0.92002 1.90726 1.52352 1.55150 1.47925 1.45917 1.57971 1.23839 1.09221 1.21196 0.99689 0.95096 0.83257 1.21197 0.99391 0.93630 0.96313 0.89678 1.21703 0.98942 0.98278 1.00406 1.21977 0.97625 0.89920 0.96846 1.60030 1.24999 1.35798 1.09997 1.21523 0.98995 0.94020 0.92252 1.20873 0.84471 0.88264 0.83867 1.90482 1.63450 1.66288 1.30619 1.41935 1.45822 1.25505 1.07806 1.19652 1.28005 1.04503 0.94398 0.90230 1.26036 0.99048 1.02128 0.93966 1.69669 1.46276 1.42115 0.98100 0.84991 0.78232 0.77502 0.77637 1.19703 1.19541 1.19625 1.21112 0.93819 0.98283 1.01129 0.90036 0.90866 0.91469 0.84616 0.84499 0.85312 0.85404 0.85336 0.74671 0.92329 0.92248 0.91406 0.93256 0.92864 0.90522 0.94251 0.83651 0.88010 0.91723 0.77019 0.91310 0.85539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 71.24 0.71 -0.51 16 2 C -0.10 -1.59 5.88 -19.86 -0.12 -1.70 16 3 C -0.14 -2.08 9.70 22.27 0.22 -1.87 16 4 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 5 C -0.13 -2.14 9.70 22.27 0.22 -1.93 16 6 C -0.07 -1.22 4.37 -19.87 -0.09 -1.31 16 7 C -0.10 -1.06 5.83 29.10 0.17 -0.89 16 8 C 0.51 9.10 7.82 87.66 0.69 9.79 16 9 O -0.58 -16.31 16.03 -3.02 -0.05 -16.36 16 10 N -0.72 -9.80 5.28 -463.05 -2.45 -12.25 16 11 C 0.13 2.25 5.06 86.38 0.44 2.69 16 12 C -0.09 -1.46 2.57 -10.79 -0.03 -1.49 16 13 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 14 C -0.14 -2.43 8.95 71.98 0.64 -1.78 16 15 C 0.07 1.41 5.07 86.31 0.44 1.85 16 16 N -0.68 -19.99 5.58 -517.92 -2.89 -22.88 16 17 C 0.06 2.17 6.17 85.56 0.53 2.70 16 18 C 0.44 20.64 7.82 87.66 0.69 21.33 16 19 O -0.62 -34.01 15.78 -3.05 -0.05 -34.06 16 20 N -0.57 -29.39 5.29 -306.98 -1.62 -31.02 16 21 C -0.34 -19.08 9.68 84.04 0.81 -18.27 16 22 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -49.73 13.05 21.66 0.28 -49.45 16 25 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 29 C -0.13 -2.11 9.36 22.26 0.21 -1.90 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 32 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 33 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.13 0.75 8.09 -2.39 -0.02 0.73 16 37 H 0.13 0.74 8.08 -2.39 -0.02 0.72 16 38 H 0.42 3.25 7.66 -92.71 -0.71 2.54 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 0.88 7.18 -2.39 -0.02 0.86 16 42 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.05 1.24 7.75 -2.38 -0.02 1.22 16 44 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.34 10.61 8.43 -89.69 -0.76 9.86 16 47 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 48 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 49 H 0.40 19.32 7.90 -92.71 -0.73 18.58 16 50 H 0.28 14.07 8.31 -92.70 -0.77 13.30 16 51 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -75.73 427.68 0.22 -75.51 By element: Atomic # 1 Polarization: 42.16 SS G_CDS: -1.25 Total: 40.91 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 6.22 Total: 4.79 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -6.68 Total: -115.60 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -0.10 Total: -50.42 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -75.73 0.22 -75.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495729378.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.357 kcal (2) G-P(sol) polarization free energy of solvation -75.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds