Wall clock time and date at job start Wed Apr 1 2020 04:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38258 * 119.99806 * 2 1 4 4 C 1.38213 * 120.00143 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.99775 * 359.77206 * 4 3 2 6 6 C 1.38207 * 119.99952 * 0.45918 * 5 4 3 7 7 C 1.50701 * 120.00057 * 179.79092 * 6 5 4 8 8 C 1.50703 * 109.47355 * 269.72794 * 7 6 5 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 H 1.08999 * 109.47456 * 54.99631 * 12 11 10 14 14 C 1.53008 * 109.46909 * 294.99709 * 12 11 10 15 15 C 1.53004 * 109.47336 * 175.00083 * 12 11 10 16 16 N 1.46904 * 109.47039 * 184.99857 * 15 12 11 17 17 C 1.46900 * 110.99779 * 179.97438 * 16 15 12 18 18 C 1.50690 * 109.47106 * 179.97438 * 17 16 15 19 19 O 1.21298 * 120.00467 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00387 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00592 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99627 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00052 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00006 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99724 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47189 * 90.00044 * 25 23 21 27 27 H 1.48499 * 109.47165 * 209.99718 * 25 23 21 28 28 H 1.48497 * 109.47016 * 329.99751 * 25 23 21 29 29 C 1.38208 * 120.00298 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.46993 * 270.02070 * 1 2 3 31 31 H 1.08997 * 109.47071 * 30.02180 * 1 2 3 32 32 H 1.08997 * 109.46560 * 150.02160 * 1 2 3 33 33 H 1.08009 * 120.00384 * 359.97438 * 3 2 1 34 34 H 1.08001 * 119.99904 * 179.97438 * 4 3 2 35 35 H 1.08006 * 119.99748 * 180.25141 * 5 4 3 36 36 H 1.08998 * 109.47477 * 149.72640 * 7 6 5 37 37 H 1.09002 * 109.47412 * 29.72899 * 7 6 5 38 38 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 40 40 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 41 41 H 1.08995 * 109.47053 * 60.00309 * 14 12 11 42 42 H 1.09001 * 109.46930 * 179.97438 * 14 12 11 43 43 H 1.09000 * 109.46973 * 299.99649 * 14 12 11 44 44 H 1.09005 * 109.46502 * 304.99456 * 15 12 11 45 45 H 1.08996 * 109.47343 * 64.99524 * 15 12 11 46 46 H 1.00901 * 110.99746 * 56.04414 * 16 15 12 47 47 H 1.09003 * 109.47187 * 300.00097 * 17 16 15 48 48 H 1.09004 * 109.47157 * 59.99918 * 17 16 15 49 49 H 0.97005 * 119.99944 * 0.02562 * 20 18 17 50 50 H 0.97001 * 119.99754 * 180.02562 * 24 23 21 51 51 H 1.08001 * 120.00179 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0058 6 6 3.5807 -1.1967 0.0010 7 6 4.3343 -2.5018 0.0020 8 6 4.5855 -2.9380 -1.4185 9 8 4.1911 -2.2563 -2.3408 10 7 5.2477 -4.0860 -1.6639 11 6 5.4972 -4.5068 -3.0447 12 6 6.2665 -5.8293 -3.0437 13 1 5.7199 -6.5672 -2.4565 14 6 7.6513 -5.6132 -2.4299 15 6 6.4185 -6.3320 -4.4808 16 7 7.0506 -7.6581 -4.4713 17 6 7.2124 -8.1738 -5.8373 18 6 7.8631 -9.5321 -5.7875 19 8 8.1622 -10.0227 -4.7193 20 7 8.1118 -10.2025 -6.9300 21 6 8.7042 -11.4381 -6.8848 22 1 8.9712 -11.8744 -5.9336 23 6 8.9611 -12.1289 -8.0627 24 7 8.6357 -11.5982 -9.2200 25 14 9.7676 -13.8127 -8.0010 26 1 8.7195 -14.8604 -7.9070 27 1 10.5688 -14.0232 -9.2335 28 1 10.6557 -13.8929 -6.8136 29 6 2.1981 -1.1969 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3632 -0.8902 -0.5135 33 1 1.6583 2.1328 -0.0004 34 1 4.1204 2.1328 0.0001 35 1 5.3518 0.0003 0.0104 36 1 3.7452 -3.2611 0.5164 37 1 5.2867 -2.3712 0.5158 38 1 5.5628 -4.6313 -0.9261 39 1 4.5467 -4.6398 -3.5614 40 1 6.0852 -3.7448 -3.5562 41 1 7.5431 -5.2551 -1.4062 42 1 8.1992 -6.5555 -2.4288 43 1 8.1979 -4.8754 -3.0172 44 1 5.4357 -6.4013 -4.9472 45 1 7.0404 -5.6371 -5.0450 46 1 6.5264 -8.3044 -3.9008 47 1 6.2350 -8.2559 -6.3129 48 1 7.8396 -7.4917 -6.4113 49 1 7.8723 -9.8105 -7.7843 50 1 8.8147 -12.0806 -10.0423 51 1 1.6582 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495729379.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:26 Heat of formation + Delta-G solvation = -68.341465 kcal Electronic energy + Delta-G solvation = -28337.857073 eV Core-core repulsion = 24236.046785 eV Total energy + Delta-G solvation = -4101.810288 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.40950 -39.26525 -38.36694 -37.19838 -34.89935 -33.88478 -33.83977 -32.53614 -32.12008 -31.19483 -28.62772 -27.40710 -27.21669 -26.34496 -24.75874 -23.16778 -22.46674 -21.44882 -20.81062 -20.17015 -19.18005 -17.89320 -17.33458 -16.89137 -16.41937 -16.21394 -15.91639 -15.70865 -15.26623 -15.00191 -14.73866 -14.56766 -14.35900 -14.15281 -13.85823 -13.66667 -13.52643 -13.42535 -13.33295 -13.24059 -12.77739 -12.59406 -12.40363 -12.22831 -12.21564 -11.91320 -11.68121 -11.52224 -11.42301 -11.31129 -11.15618 -11.06357 -10.99409 -10.88901 -10.39768 -10.22465 -10.15727 -9.51291 -9.31582 -9.08917 -8.89401 -8.46868 -8.06339 -7.96182 -6.42047 -3.82955 1.01387 1.10442 2.38858 2.88107 3.17485 3.26235 3.32168 3.50063 3.90635 4.08677 4.23274 4.30233 4.41816 4.56532 4.59553 4.69726 4.78149 4.82637 4.86370 4.94319 4.96370 5.09476 5.16296 5.17164 5.23475 5.25681 5.32951 5.34599 5.46072 5.47126 5.58903 5.66759 5.73826 5.75472 5.81108 5.86400 5.87969 5.98207 6.07170 6.15067 6.22015 6.23826 6.26552 6.29108 6.38251 6.70482 7.18941 7.21467 7.54787 7.64109 7.96809 8.05970 8.60893 9.17490 9.54080 10.05406 10.75689 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.035083 B = 0.001245 C = 0.001232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.917068 B =22491.350482 C =22724.447152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.111 4.111 6 C -0.061 4.061 7 C -0.104 4.104 8 C 0.512 3.488 9 O -0.531 6.531 10 N -0.729 5.729 11 C 0.124 3.876 12 C -0.099 4.099 13 H 0.076 0.924 14 C -0.140 4.140 15 C 0.066 3.934 16 N -0.666 5.666 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C -0.106 4.106 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.401 0.599 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.044 0.956 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.029 0.971 45 H 0.074 0.926 46 H 0.348 0.652 47 H 0.043 0.957 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.963 24.035 18.852 33.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.140 4.140 4 C -0.133 4.133 5 C -0.129 4.129 6 C -0.062 4.062 7 C -0.143 4.143 8 C 0.298 3.702 9 O -0.407 6.407 10 N -0.381 5.381 11 C 0.000 4.000 12 C -0.119 4.119 13 H 0.095 0.905 14 C -0.197 4.197 15 C -0.065 4.065 16 N -0.298 5.298 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.124 4.124 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.236 0.764 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.093 0.907 46 H 0.167 0.833 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.377 24.357 18.711 33.114 hybrid contribution -0.438 -1.115 -0.632 1.354 sum -12.815 23.242 18.078 32.113 Atomic orbital electron populations 1.20792 0.91201 1.02896 1.02227 1.19874 0.96057 0.93095 0.99598 1.21028 0.94313 0.97459 1.01233 1.21081 0.94309 0.97895 1.00027 1.20959 0.99678 0.92018 1.00290 1.19227 0.93488 0.93564 0.99882 1.20688 1.02386 0.96395 0.94874 1.20522 0.77765 0.80688 0.91254 1.90746 1.50168 1.53587 1.46199 1.46027 1.58578 1.24239 1.09284 1.21388 0.99978 0.96067 0.82523 1.21342 0.97380 0.95571 0.97567 0.90527 1.21758 0.95775 1.03240 0.98952 1.21901 0.97209 0.92177 0.95177 1.60050 1.55046 1.03292 1.11396 1.21666 0.99569 0.96460 0.90509 1.19808 0.85428 0.87067 0.85080 1.90518 1.57128 1.69820 1.29372 1.41867 1.53699 1.17435 1.07016 1.19706 1.35278 0.93251 0.94732 0.87924 1.25260 0.97908 1.00100 0.94633 1.69613 1.47881 1.39141 0.97659 0.85857 0.79094 0.81554 0.77785 1.20435 1.20914 1.19396 1.20849 0.93358 0.97651 1.00557 0.91207 0.91538 0.91509 0.86222 0.86059 0.86278 0.87898 0.87840 0.76423 0.91549 0.91259 0.93710 0.90414 0.92805 0.95293 0.90742 0.83265 0.93878 0.89592 0.77453 0.91870 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.01 36.01 0.36 -0.31 16 2 C -0.09 -0.71 5.88 -104.62 -0.62 -1.33 16 3 C -0.12 -0.97 9.70 -39.58 -0.38 -1.36 16 4 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 5 C -0.11 -0.95 9.70 -39.59 -0.38 -1.34 16 6 C -0.06 -0.53 4.37 -104.63 -0.46 -0.99 16 7 C -0.10 -0.67 5.83 -29.03 -0.17 -0.84 16 8 C 0.51 4.91 7.82 -10.98 -0.09 4.83 16 9 O -0.53 -7.51 16.03 5.55 0.09 -7.42 16 10 N -0.73 -5.71 5.28 -60.30 -0.32 -6.03 16 11 C 0.12 1.15 5.06 -4.04 -0.02 1.13 16 12 C -0.10 -0.93 2.57 -90.62 -0.23 -1.16 16 13 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 14 C -0.14 -1.36 8.95 37.16 0.33 -1.03 16 15 C 0.07 0.76 5.07 -3.82 -0.02 0.74 16 16 N -0.67 -10.19 5.58 -115.05 -0.64 -10.84 16 17 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 18 C 0.44 10.33 7.82 -10.99 -0.09 10.24 16 19 O -0.58 -15.69 15.78 5.54 0.09 -15.60 16 20 N -0.56 -14.26 5.29 -10.97 -0.06 -14.32 16 21 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 25 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 C -0.11 -0.92 9.36 -39.59 -0.37 -1.29 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 32 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 33 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 34 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.10 0.45 8.09 -51.93 -0.42 0.03 16 37 H 0.10 0.45 8.08 -51.93 -0.42 0.03 16 38 H 0.40 2.14 7.65 -40.82 -0.31 1.83 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.04 0.34 7.18 -51.93 -0.37 -0.03 16 42 H 0.08 0.94 7.75 -51.93 -0.40 0.54 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.35 5.49 8.43 -39.29 -0.33 5.16 16 47 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 49 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 50 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 51 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 427.67 15.07 6.44 6.44 Total: -1.00 -34.46 427.67 -9.93 -44.39 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -8.43 Total: 12.39 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.80 Total: -1.18 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.29 Total: -54.99 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.18 Total: -23.02 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -34.46 -9.93 -44.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495729379.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.955 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds