Wall clock time and date at job start Wed Apr 1 2020 04:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38258 * 119.99806 * 2 1 4 4 C 1.38213 * 120.00143 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.99775 * 359.77206 * 4 3 2 6 6 C 1.38207 * 119.99952 * 0.45918 * 5 4 3 7 7 C 1.50701 * 120.00057 * 179.79092 * 6 5 4 8 8 C 1.50703 * 109.47355 * 269.72794 * 7 6 5 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 H 1.08999 * 109.47456 * 54.99631 * 12 11 10 14 14 C 1.53008 * 109.46909 * 294.99709 * 12 11 10 15 15 C 1.53004 * 109.47336 * 175.00083 * 12 11 10 16 16 N 1.46904 * 109.47039 * 184.99857 * 15 12 11 17 17 C 1.46900 * 110.99779 * 179.97438 * 16 15 12 18 18 C 1.50690 * 109.47106 * 179.97438 * 17 16 15 19 19 O 1.21298 * 120.00467 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00387 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00592 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99627 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00052 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00006 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99724 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47189 * 90.00044 * 25 23 21 27 27 H 1.48499 * 109.47165 * 209.99718 * 25 23 21 28 28 H 1.48497 * 109.47016 * 329.99751 * 25 23 21 29 29 C 1.38208 * 120.00298 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.46993 * 270.02070 * 1 2 3 31 31 H 1.08997 * 109.47071 * 30.02180 * 1 2 3 32 32 H 1.08997 * 109.46560 * 150.02160 * 1 2 3 33 33 H 1.08009 * 120.00384 * 359.97438 * 3 2 1 34 34 H 1.08001 * 119.99904 * 179.97438 * 4 3 2 35 35 H 1.08006 * 119.99748 * 180.25141 * 5 4 3 36 36 H 1.08998 * 109.47477 * 149.72640 * 7 6 5 37 37 H 1.09002 * 109.47412 * 29.72899 * 7 6 5 38 38 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 40 40 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 41 41 H 1.08995 * 109.47053 * 60.00309 * 14 12 11 42 42 H 1.09001 * 109.46930 * 179.97438 * 14 12 11 43 43 H 1.09000 * 109.46973 * 299.99649 * 14 12 11 44 44 H 1.09005 * 109.46502 * 304.99456 * 15 12 11 45 45 H 1.08996 * 109.47343 * 64.99524 * 15 12 11 46 46 H 1.00901 * 110.99746 * 56.04414 * 16 15 12 47 47 H 1.09003 * 109.47187 * 300.00097 * 17 16 15 48 48 H 1.09004 * 109.47157 * 59.99918 * 17 16 15 49 49 H 0.97005 * 119.99944 * 0.02562 * 20 18 17 50 50 H 0.97001 * 119.99754 * 180.02562 * 24 23 21 51 51 H 1.08001 * 120.00179 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0058 6 6 3.5807 -1.1967 0.0010 7 6 4.3343 -2.5018 0.0020 8 6 4.5855 -2.9380 -1.4185 9 8 4.1911 -2.2563 -2.3408 10 7 5.2477 -4.0860 -1.6639 11 6 5.4972 -4.5068 -3.0447 12 6 6.2665 -5.8293 -3.0437 13 1 5.7199 -6.5672 -2.4565 14 6 7.6513 -5.6132 -2.4299 15 6 6.4185 -6.3320 -4.4808 16 7 7.0506 -7.6581 -4.4713 17 6 7.2124 -8.1738 -5.8373 18 6 7.8631 -9.5321 -5.7875 19 8 8.1622 -10.0227 -4.7193 20 7 8.1118 -10.2025 -6.9300 21 6 8.7042 -11.4381 -6.8848 22 1 8.9712 -11.8744 -5.9336 23 6 8.9611 -12.1289 -8.0627 24 7 8.6357 -11.5982 -9.2200 25 14 9.7676 -13.8127 -8.0010 26 1 8.7195 -14.8604 -7.9070 27 1 10.5688 -14.0232 -9.2335 28 1 10.6557 -13.8929 -6.8136 29 6 2.1981 -1.1969 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3632 -0.8902 -0.5135 33 1 1.6583 2.1328 -0.0004 34 1 4.1204 2.1328 0.0001 35 1 5.3518 0.0003 0.0104 36 1 3.7452 -3.2611 0.5164 37 1 5.2867 -2.3712 0.5158 38 1 5.5628 -4.6313 -0.9261 39 1 4.5467 -4.6398 -3.5614 40 1 6.0852 -3.7448 -3.5562 41 1 7.5431 -5.2551 -1.4062 42 1 8.1992 -6.5555 -2.4288 43 1 8.1979 -4.8754 -3.0172 44 1 5.4357 -6.4013 -4.9472 45 1 7.0404 -5.6371 -5.0450 46 1 6.5264 -8.3044 -3.9008 47 1 6.2350 -8.2559 -6.3129 48 1 7.8396 -7.4917 -6.4113 49 1 7.8723 -9.8105 -7.7843 50 1 8.8147 -12.0806 -10.0423 51 1 1.6582 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495729379.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:25 Heat of formation + Delta-G solvation = -91.970134 kcal Electronic energy + Delta-G solvation = -28338.881689 eV Core-core repulsion = 24236.046785 eV Total energy + Delta-G solvation = -4102.834904 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.09371 -40.18298 -39.86759 -38.23645 -36.17708 -35.62687 -34.43932 -33.45597 -33.16898 -32.77840 -29.32546 -28.71112 -27.74887 -27.23385 -26.35833 -24.39849 -23.07333 -22.10052 -21.64724 -21.12345 -20.72164 -19.88437 -18.09125 -17.78916 -17.45264 -17.01841 -16.95646 -16.78481 -16.50485 -16.08842 -15.97531 -15.60938 -15.43063 -15.24842 -15.14292 -14.66660 -14.43388 -14.33982 -14.07117 -13.96164 -13.78762 -13.57764 -13.40792 -13.25246 -13.13470 -13.00621 -12.84533 -12.75736 -12.71456 -12.41542 -12.12275 -12.00206 -11.99428 -11.89253 -11.83717 -11.70719 -11.50020 -10.96896 -10.33906 -10.06843 -10.01262 -9.67973 -9.46805 -9.29927 -8.46433 -5.95309 0.42704 0.51397 1.38440 1.42318 1.55137 1.67580 2.05715 2.19524 2.30517 2.87970 2.99412 3.21079 3.53745 3.68710 3.87371 3.90883 3.92530 4.05825 4.07380 4.15248 4.25434 4.33143 4.39574 4.48212 4.48673 4.51059 4.58350 4.62332 4.64021 4.66048 4.77999 4.82074 4.83280 4.84923 4.97561 4.99709 5.09912 5.20041 5.29150 5.31294 5.41170 5.47063 5.55405 5.57745 5.66212 5.71608 5.88709 6.10127 6.15472 6.42400 6.59024 6.60281 7.12790 7.29443 7.56635 8.11626 8.70976 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.035083 B = 0.001245 C = 0.001232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.917068 B =22491.350482 C =22724.447152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.136 4.136 4 C -0.126 4.126 5 C -0.130 4.130 6 C -0.075 4.075 7 C -0.097 4.097 8 C 0.511 3.489 9 O -0.582 6.582 10 N -0.716 5.716 11 C 0.132 3.868 12 C -0.086 4.086 13 H 0.085 0.915 14 C -0.136 4.136 15 C 0.066 3.934 16 N -0.676 5.676 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.574 5.574 21 C -0.335 4.335 22 H 0.080 0.920 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.272 1.272 29 C -0.126 4.126 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.416 0.584 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.048 0.952 44 H 0.039 0.961 45 H 0.076 0.924 46 H 0.345 0.655 47 H 0.065 0.935 48 H 0.102 0.898 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.345 24.419 19.630 34.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.154 4.154 4 C -0.144 4.144 5 C -0.148 4.148 6 C -0.075 4.075 7 C -0.136 4.136 8 C 0.299 3.701 9 O -0.462 6.462 10 N -0.369 5.369 11 C 0.008 3.992 12 C -0.105 4.105 13 H 0.103 0.897 14 C -0.193 4.193 15 C -0.064 4.064 16 N -0.308 5.308 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.508 6.508 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.197 1.197 29 C -0.144 4.144 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.253 0.747 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.095 0.905 46 H 0.163 0.837 47 H 0.083 0.917 48 H 0.120 0.880 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.759 24.744 19.503 33.992 hybrid contribution -0.336 -1.173 -0.845 1.484 sum -13.095 23.571 18.658 32.790 Atomic orbital electron populations 1.20821 0.89822 1.03235 1.03072 1.20225 0.97329 0.93185 0.99235 1.21323 0.94610 0.98202 1.01234 1.21389 0.94694 0.98617 0.99689 1.21235 1.00431 0.92376 1.00715 1.19522 0.93775 0.94553 0.99660 1.20740 1.03876 0.96012 0.93001 1.21052 0.76785 0.80275 0.92003 1.90727 1.52341 1.55159 1.47929 1.45917 1.57844 1.23963 1.09223 1.21194 0.99282 0.95505 0.83256 1.21198 0.97350 0.95684 0.96300 0.89680 1.21706 0.95424 1.01818 1.00387 1.21978 0.97426 0.90133 0.96834 1.60045 1.56127 1.04549 1.10089 1.21522 1.00188 0.92842 0.92248 1.20874 0.84047 0.88672 0.83864 1.90486 1.58407 1.71314 1.30635 1.41943 1.54187 1.17166 1.07799 1.19684 1.37421 0.94969 0.94375 0.90244 1.26037 0.97850 1.03352 0.93967 1.69675 1.48012 1.40398 0.98098 0.84928 0.78264 0.77238 0.77917 1.19596 1.19605 1.19722 1.21111 0.93831 0.98267 1.01157 0.90043 0.90859 0.91498 0.84614 0.84472 0.85269 0.85449 0.85295 0.74671 0.92335 0.92239 0.91407 0.92867 0.93247 0.94247 0.90520 0.83659 0.91700 0.88016 0.77019 0.91320 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 71.24 0.71 -0.52 16 2 C -0.10 -1.59 5.88 -19.87 -0.12 -1.71 16 3 C -0.14 -2.08 9.70 22.27 0.22 -1.87 16 4 C -0.13 -1.96 10.05 22.27 0.22 -1.73 16 5 C -0.13 -2.13 9.70 22.27 0.22 -1.91 16 6 C -0.07 -1.22 4.37 -19.87 -0.09 -1.31 16 7 C -0.10 -1.06 5.83 29.10 0.17 -0.89 16 8 C 0.51 9.10 7.82 87.66 0.69 9.79 16 9 O -0.58 -16.31 16.03 -3.04 -0.05 -16.36 16 10 N -0.72 -9.80 5.28 -463.07 -2.45 -12.25 16 11 C 0.13 2.25 5.06 86.38 0.44 2.69 16 12 C -0.09 -1.46 2.57 -10.79 -0.03 -1.49 16 13 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 14 C -0.14 -2.43 8.95 71.98 0.64 -1.78 16 15 C 0.07 1.41 5.07 86.30 0.44 1.85 16 16 N -0.68 -19.98 5.58 -517.92 -2.89 -22.87 16 17 C 0.06 2.16 6.17 85.55 0.53 2.69 16 18 C 0.44 20.65 7.82 87.65 0.69 21.34 16 19 O -0.62 -34.03 15.78 -3.09 -0.05 -34.08 16 20 N -0.57 -29.40 5.29 -306.99 -1.62 -31.02 16 21 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 24 N -0.92 -49.74 13.05 21.66 0.28 -49.45 16 25 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 29 C -0.13 -2.12 9.36 22.27 0.21 -1.91 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 32 H 0.07 0.71 8.09 -2.39 -0.02 0.69 16 33 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.13 1.71 8.06 -2.91 -0.02 1.68 16 36 H 0.13 0.76 8.09 -2.39 -0.02 0.74 16 37 H 0.13 0.74 8.08 -2.39 -0.02 0.72 16 38 H 0.42 3.25 7.65 -92.71 -0.71 2.54 16 39 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 0.88 7.18 -2.39 -0.02 0.86 16 42 H 0.05 1.24 7.75 -2.39 -0.02 1.22 16 43 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 44 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.34 10.60 8.43 -89.69 -0.76 9.85 16 47 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 49 H 0.40 19.31 7.90 -92.70 -0.73 18.58 16 50 H 0.28 14.03 8.31 -92.71 -0.77 13.25 16 51 H 0.13 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -75.81 427.67 0.22 -75.59 By element: Atomic # 1 Polarization: 42.04 SS G_CDS: -1.25 Total: 40.79 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 6.21 Total: 4.83 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -6.68 Total: -115.60 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -0.10 Total: -50.44 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -75.81 0.22 -75.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495729379.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.375 kcal (2) G-P(sol) polarization free energy of solvation -75.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds