Wall clock time and date at job start Wed Apr 1 2020 04:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38386 * 119.85278 * 2 1 4 4 C 1.37929 * 120.14415 * 179.97438 * 3 2 1 5 5 C 1.39600 * 119.85275 * 0.02562 * 4 3 2 6 6 C 1.47853 * 120.14250 * 179.97438 * 5 4 3 7 7 O 1.21545 * 119.99794 * 179.97438 * 6 5 4 8 8 N 1.34777 * 119.99699 * 0.02562 * 6 5 4 9 9 C 1.46508 * 119.99430 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.47254 * 322.98807 * 9 8 6 11 11 C 1.52996 * 109.46909 * 82.99433 * 9 8 6 12 12 C 1.53000 * 109.46962 * 202.98765 * 9 8 6 13 13 N 1.46907 * 109.46825 * 55.16697 * 12 9 8 14 14 C 1.46905 * 110.99913 * 198.92532 * 13 12 9 15 15 C 1.46904 * 111.00069 * 74.97334 * 13 12 9 16 16 C 1.50691 * 109.47165 * 190.00001 * 15 13 12 17 17 O 1.21294 * 119.99874 * 359.97438 * 16 15 13 18 18 N 1.34778 * 120.00042 * 180.02562 * 16 15 13 19 19 C 1.37099 * 119.99928 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00095 * 0.02562 * 19 18 16 21 21 C 1.38946 * 119.99664 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00511 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00030 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47094 * 59.99672 * 23 21 19 25 25 H 1.48493 * 109.47300 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47012 * 300.00260 * 23 21 19 27 27 C 1.39556 * 119.71383 * 359.71172 * 5 4 3 28 28 C 1.37983 * 119.84689 * 0.53432 * 27 5 4 29 29 C 1.50698 * 119.92533 * 179.75188 * 28 27 5 30 30 H 1.08998 * 109.47659 * 270.02324 * 1 2 3 31 31 H 1.09007 * 109.47009 * 30.02390 * 1 2 3 32 32 H 1.09001 * 109.47140 * 150.02231 * 1 2 3 33 33 H 1.08003 * 119.92547 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.07340 * 180.02562 * 4 3 2 35 35 H 0.96998 * 120.00427 * 0.02562 * 8 6 5 36 36 H 1.08994 * 109.47674 * 59.99630 * 11 9 8 37 37 H 1.09002 * 109.47039 * 180.02562 * 11 9 8 38 38 H 1.09002 * 109.46945 * 299.99776 * 11 9 8 39 39 H 1.09001 * 109.47105 * 175.16516 * 12 9 8 40 40 H 1.08997 * 109.47317 * 295.17035 * 12 9 8 41 41 H 1.09000 * 109.46749 * 54.12328 * 14 13 12 42 42 H 1.08994 * 109.46891 * 174.12296 * 14 13 12 43 43 H 1.08999 * 109.46808 * 294.12500 * 14 13 12 44 44 H 1.08997 * 109.46759 * 309.99834 * 15 13 12 45 45 H 1.09004 * 109.47044 * 69.99690 * 15 13 12 46 46 H 0.96995 * 120.00118 * 359.97438 * 18 16 15 47 47 H 0.97002 * 120.00392 * 179.97438 * 22 21 19 48 48 H 1.07995 * 120.07404 * 180.29343 * 27 5 4 49 49 H 1.08999 * 109.47577 * 269.73677 * 29 28 27 50 50 H 1.08996 * 109.47209 * 149.72523 * 29 28 27 51 51 H 1.09006 * 109.46892 * 29.73071 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5751 1.2072 0.0005 5 6 4.2762 0.0000 0.0005 6 6 5.7547 0.0001 0.0005 7 8 6.3624 -1.0525 0.0010 8 7 6.4285 1.1673 0.0011 9 6 7.8936 1.1673 0.0016 10 1 8.2567 0.3466 0.6202 11 6 8.4041 0.9917 -1.4299 12 6 8.4033 2.4951 0.5655 13 7 7.8201 2.7186 1.8952 14 6 7.9075 4.1344 2.2772 15 6 8.4604 1.8612 2.9017 16 6 7.6831 1.9333 4.1907 17 8 6.6934 2.6307 4.2638 18 7 8.0883 1.2237 5.2625 19 6 7.3814 1.2898 6.4354 20 1 6.4997 1.9101 6.5003 21 6 7.7988 0.5578 7.5402 22 7 8.8714 -0.1974 7.4611 23 14 6.8353 0.6471 9.1381 24 1 5.4445 0.1821 8.9042 25 1 7.4822 -0.2200 10.1553 26 1 6.8128 2.0499 9.6247 27 6 3.5754 -1.2068 0.0061 28 6 2.1956 -1.1998 0.0004 29 6 1.4371 -2.5020 0.0007 30 1 -0.3634 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6522 2.1335 -0.0004 34 1 4.1116 2.1446 0.0010 35 1 5.9435 2.0074 0.0018 36 1 8.0410 1.8124 -2.0485 37 1 9.4941 0.9912 -1.4295 38 1 8.0409 0.0457 -1.8317 39 1 9.4899 2.4624 0.6461 40 1 8.1127 3.3080 -0.1000 41 1 7.4562 4.7493 1.4985 42 1 7.3772 4.2906 3.2165 43 1 8.9539 4.4136 2.3998 44 1 8.4768 0.8316 2.5444 45 1 9.4813 2.2026 3.0734 46 1 8.8799 0.6663 5.2041 47 1 9.1630 -0.7081 8.2325 48 1 4.1119 -2.1441 0.0109 49 1 1.2544 -2.8163 -1.0268 50 1 0.4853 -2.3679 0.5145 51 1 2.0233 -3.2637 0.5148 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498447167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:04 Heat of formation + Delta-G solvation = -50.213907 kcal Electronic energy + Delta-G solvation = -30809.180156 eV Core-core repulsion = 26708.155938 eV Total energy + Delta-G solvation = -4101.024218 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -40.30050 -39.06130 -38.40267 -36.83492 -34.70121 -33.79180 -33.57526 -32.21451 -31.20630 -30.89536 -28.03445 -27.88643 -26.94605 -26.65081 -24.67474 -23.18566 -22.19326 -21.95949 -20.76676 -19.87127 -19.08609 -17.81430 -17.59217 -16.46370 -16.16145 -15.46994 -15.38257 -15.27445 -14.83308 -14.68182 -14.63089 -14.25385 -14.22825 -13.89752 -13.64607 -13.58150 -13.40552 -13.14103 -13.00722 -12.85680 -12.62703 -12.44656 -12.22823 -12.12565 -12.01193 -11.84514 -11.70415 -11.46488 -11.45758 -11.38553 -11.20678 -11.06019 -10.98423 -10.60627 -10.41358 -10.18039 -9.75336 -9.43250 -8.96682 -8.85372 -8.60880 -8.43391 -7.95347 -7.84790 -6.37688 -3.78475 0.84968 1.31258 2.94253 3.22305 3.27621 3.28058 3.32197 3.86812 3.94078 4.00081 4.25779 4.61818 4.62952 4.73153 4.79112 4.91374 5.06254 5.10343 5.16218 5.18197 5.24399 5.31634 5.35825 5.37992 5.43379 5.45905 5.56025 5.57274 5.61821 5.65394 5.68089 5.70464 5.75800 5.91577 5.96798 5.97379 6.00977 6.05757 6.14116 6.27068 6.31659 6.34485 6.48287 6.51568 6.64121 6.85785 7.24013 7.35143 7.58376 7.70374 8.09791 8.40564 8.65817 9.21785 9.58629 10.10455 10.80085 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007629 B = 0.003246 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3669.551796 B = 8624.339480 C =10783.386185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.066 4.066 3 C -0.126 4.126 4 C -0.081 4.081 5 C -0.131 4.131 6 C 0.561 3.439 7 O -0.545 6.545 8 N -0.700 5.700 9 C 0.147 3.853 10 H 0.087 0.913 11 C -0.161 4.161 12 C 0.042 3.958 13 N -0.516 5.516 14 C 0.023 3.977 15 C 0.044 3.956 16 C 0.446 3.554 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.057 4.057 28 C -0.099 4.099 29 C -0.115 4.115 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.402 0.598 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.097 0.903 43 H 0.015 0.985 44 H 0.087 0.913 45 H 0.048 0.952 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.134 0.866 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 2.129 -19.637 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.066 4.066 3 C -0.144 4.144 4 C -0.100 4.100 5 C -0.134 4.134 6 C 0.349 3.651 7 O -0.424 6.424 8 N -0.350 5.350 9 C 0.041 3.959 10 H 0.105 0.895 11 C -0.220 4.220 12 C -0.087 4.087 13 N -0.239 5.239 14 C -0.125 4.125 15 C -0.087 4.087 16 C 0.231 3.769 17 O -0.463 6.463 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.076 4.076 28 C -0.099 4.099 29 C -0.171 4.171 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.238 0.762 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.116 0.884 43 H 0.033 0.967 44 H 0.105 0.895 45 H 0.065 0.935 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.152 0.848 49 H 0.088 0.912 50 H 0.088 0.912 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.098 1.618 -19.442 21.526 hybrid contribution 0.879 0.343 0.970 1.353 sum -8.220 1.961 -18.471 20.313 Atomic orbital electron populations 1.20880 0.91133 1.02859 1.02645 1.19957 0.96123 0.92657 0.97890 1.20939 0.93905 0.97643 1.01865 1.21283 0.94452 0.97105 0.97147 1.19926 0.93000 0.94337 1.06091 1.18208 0.87030 0.83901 0.75982 1.90742 1.69862 1.31288 1.50495 1.45652 1.06754 1.08406 1.74217 1.20957 0.80071 0.98471 0.96369 0.89469 1.22146 1.01213 1.02456 0.96166 1.22499 0.97573 0.97016 0.91576 1.61559 1.55731 1.06336 1.00324 1.22554 0.99180 0.87123 1.03627 1.21928 0.95691 0.98354 0.92759 1.19682 0.87622 0.84893 0.84668 1.90464 1.28165 1.43692 1.83939 1.41855 1.27007 1.41153 1.10039 1.19631 1.09551 1.26156 0.87473 0.88025 1.25250 0.96699 0.96218 0.99736 1.69606 1.23774 1.28996 1.31946 0.85935 0.79463 0.78218 0.80698 1.19908 1.20973 1.19944 1.21130 0.93077 0.97862 0.95523 1.19715 0.93377 0.95157 1.01693 1.20816 1.00034 0.94004 1.02265 0.90772 0.91416 0.91188 0.85523 0.85523 0.76223 0.92506 0.91648 0.91774 0.93232 0.90327 0.92378 0.88421 0.96686 0.89522 0.93453 0.77537 0.91844 0.84790 0.91193 0.91232 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.18 36.01 0.33 -0.57 16 2 C -0.07 -0.71 5.89 -104.53 -0.62 -1.32 16 3 C -0.13 -1.37 9.68 -39.64 -0.38 -1.75 16 4 C -0.08 -0.99 9.54 -39.19 -0.37 -1.36 16 5 C -0.13 -1.87 5.87 -104.96 -0.62 -2.49 16 6 C 0.56 8.94 7.71 -12.33 -0.10 8.85 16 7 O -0.55 -10.34 16.03 5.33 0.09 -10.26 16 8 N -0.70 -9.45 4.78 -54.75 -0.26 -9.71 16 9 C 0.15 1.86 2.55 -67.93 -0.17 1.69 16 10 H 0.09 1.34 6.41 -51.93 -0.33 1.00 16 11 C -0.16 -1.66 9.46 37.16 0.35 -1.31 16 12 C 0.04 0.50 4.54 -3.82 -0.02 0.48 16 13 N -0.52 -8.15 4.16 -244.37 -1.02 -9.16 16 14 C 0.02 0.35 9.17 60.07 0.55 0.90 16 15 C 0.04 0.81 5.28 -4.98 -0.03 0.78 16 16 C 0.45 10.70 7.52 -10.99 -0.08 10.62 16 17 O -0.58 -15.49 13.88 5.55 0.08 -15.42 16 18 N -0.56 -14.69 5.29 -10.97 -0.06 -14.74 16 19 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -25.11 13.05 55.50 0.72 -24.39 16 23 Si 0.93 21.47 29.55 -169.99 -5.02 16.45 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 C -0.06 -0.78 9.24 -39.18 -0.36 -1.15 16 28 C -0.10 -1.15 5.87 -104.68 -0.61 -1.77 16 29 C -0.11 -1.00 9.18 36.00 0.33 -0.67 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.43 8.08 -51.92 -0.42 0.01 16 32 H 0.07 0.45 6.68 -51.93 -0.35 0.11 16 33 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.13 1.31 6.41 -52.49 -0.34 0.98 16 35 H 0.40 4.79 6.62 -40.82 -0.27 4.52 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 39 H 0.05 0.54 8.01 -51.93 -0.42 0.13 16 40 H 0.08 0.77 7.81 -51.93 -0.41 0.37 16 41 H 0.06 0.72 7.94 -51.93 -0.41 0.31 16 42 H 0.10 1.86 5.92 -51.93 -0.31 1.55 16 43 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 44 H 0.09 1.56 6.66 -51.93 -0.35 1.21 16 45 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16 46 H 0.39 9.87 7.90 -40.82 -0.32 9.54 16 47 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.13 1.87 7.65 -52.49 -0.40 1.46 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.07 0.52 6.68 -51.93 -0.35 0.18 16 51 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 LS Contribution 415.25 15.07 6.26 6.26 Total: -1.00 -34.02 415.25 -9.23 -43.25 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -7.97 Total: 14.91 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -2.04 Total: 2.81 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.61 Total: -58.00 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: 0.16 Total: -25.67 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.02 -9.23 -43.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498447167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.963 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds