Wall clock time and date at job start Wed Apr 1 2020 04:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38379 * 119.85514 * 2 1 4 4 C 1.37940 * 120.14877 * 179.76921 * 3 2 1 5 5 C 1.39602 * 119.84908 * 0.50172 * 4 3 2 6 6 C 1.47847 * 120.14228 * 179.72571 * 5 4 3 7 7 O 1.21546 * 119.99538 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99679 * 0.02562 * 6 5 4 9 9 C 1.46498 * 119.99490 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47325 * 34.61018 * 9 8 6 11 11 C 1.52998 * 109.47301 * 274.60506 * 9 8 6 12 12 C 1.53000 * 109.47248 * 154.60629 * 9 8 6 13 13 N 1.46902 * 109.47077 * 305.18981 * 12 9 8 14 14 C 1.46904 * 111.00306 * 163.93576 * 13 12 9 15 15 C 1.46904 * 110.99737 * 287.88571 * 13 12 9 16 16 C 1.50703 * 109.47386 * 169.99856 * 15 13 12 17 17 O 1.21289 * 119.99789 * 0.02562 * 16 15 13 18 18 N 1.34770 * 119.99764 * 179.97438 * 16 15 13 19 19 C 1.37099 * 119.99653 * 179.97438 * 18 16 15 20 20 H 1.08005 * 119.99994 * 0.02562 * 19 18 16 21 21 C 1.38952 * 120.00028 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00272 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99937 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47330 * 89.99597 * 23 21 19 25 25 H 1.48501 * 109.47132 * 210.00074 * 23 21 19 26 26 H 1.48502 * 109.47098 * 329.99812 * 23 21 19 27 27 C 1.39555 * 119.70889 * 359.75035 * 5 4 3 28 28 C 1.37972 * 119.85876 * 359.97438 * 27 5 4 29 29 C 1.50695 * 119.93309 * 179.97438 * 28 27 5 30 30 H 1.09000 * 109.47296 * 269.72380 * 1 2 3 31 31 H 1.08998 * 109.47095 * 149.73050 * 1 2 3 32 32 H 1.08995 * 109.47291 * 29.72917 * 1 2 3 33 33 H 1.08005 * 119.92655 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.07311 * 180.23187 * 4 3 2 35 35 H 0.96995 * 120.00396 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.47764 * 300.00239 * 11 9 8 37 37 H 1.09001 * 109.47246 * 60.00142 * 11 9 8 38 38 H 1.09010 * 109.47294 * 180.02562 * 11 9 8 39 39 H 1.09002 * 109.47318 * 65.18514 * 12 9 8 40 40 H 1.08999 * 109.47703 * 185.18361 * 12 9 8 41 41 H 1.08996 * 109.47083 * 54.88638 * 14 13 12 42 42 H 1.08992 * 109.46802 * 174.89147 * 14 13 12 43 43 H 1.08996 * 109.46805 * 294.88983 * 14 13 12 44 44 H 1.09000 * 109.47355 * 290.00322 * 15 13 12 45 45 H 1.09000 * 109.46926 * 49.99802 * 15 13 12 46 46 H 0.96993 * 120.00653 * 0.02562 * 18 16 15 47 47 H 0.97001 * 119.99998 * 180.02562 * 22 21 19 48 48 H 1.08001 * 120.07101 * 179.97438 * 27 5 4 49 49 H 1.09001 * 109.47470 * 270.02709 * 29 28 27 50 50 H 1.09004 * 109.46963 * 30.02326 * 29 28 27 51 51 H 1.08999 * 109.47262 * 150.02372 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2001 0.0000 4 6 3.5752 1.2072 0.0048 5 6 4.2762 0.0000 -0.0009 6 6 5.7547 0.0001 -0.0020 7 8 6.3623 -1.0526 -0.0074 8 7 6.4285 1.1673 0.0032 9 6 7.8934 1.1673 0.0027 10 1 8.2566 0.3242 -0.5849 11 6 8.4039 1.0449 1.4398 12 6 8.4033 2.4732 -0.6100 13 7 7.8136 2.6514 -1.9437 14 6 7.9627 4.0383 -2.4044 15 6 8.3991 1.7105 -2.9081 16 6 7.6090 1.7491 -4.1908 17 8 6.6525 2.4881 -4.2918 18 7 7.9659 0.9634 -5.2259 19 6 7.2468 0.9981 -6.3926 20 1 6.3945 1.6555 -6.4823 21 6 7.6143 0.1876 -7.4597 22 7 8.6515 -0.6119 -7.3508 23 14 6.6349 0.2355 -9.0497 24 1 7.2097 1.2631 -9.9544 25 1 6.6955 -1.0939 -9.7087 26 1 5.2207 0.5753 -8.7499 27 6 3.5753 -1.2068 -0.0062 28 6 2.1956 -1.1998 -0.0052 29 6 1.4371 -2.5020 -0.0115 30 1 -0.3634 -0.0050 1.0276 31 1 -0.3633 -0.8875 -0.5180 32 1 -0.3633 0.8923 -0.5096 33 1 1.6522 2.1334 -0.0004 34 1 4.1115 2.1446 0.0086 35 1 5.9435 2.0073 0.0072 36 1 8.0408 1.8880 2.0275 37 1 8.0408 0.1145 1.8764 38 1 9.4940 1.0454 1.4395 39 1 8.1180 3.3097 0.0280 40 1 9.4893 2.4351 -0.6951 41 1 9.0143 4.3225 -2.3670 42 1 7.5999 4.1218 -3.4287 43 1 7.3845 4.6996 -1.7590 44 1 9.4326 1.9926 -3.1093 45 1 8.3717 0.7024 -2.4946 46 1 8.7310 0.3727 -5.1453 47 1 8.9083 -1.1774 -8.0959 48 1 4.1118 -2.1441 -0.0111 49 1 1.2539 -2.8108 -1.0406 50 1 2.0235 -3.2665 0.4983 51 1 0.4854 -2.3706 0.5033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498447169.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:10 Heat of formation + Delta-G solvation = -49.900062 kcal Electronic energy + Delta-G solvation = -30885.714188 eV Core-core repulsion = 26784.703579 eV Total energy + Delta-G solvation = -4101.010609 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.29561 -39.06549 -38.39898 -36.83260 -34.69790 -33.78816 -33.56506 -32.20484 -31.20323 -30.89472 -28.02917 -27.87685 -26.94883 -26.64118 -24.66950 -23.18092 -22.19301 -21.95173 -20.76396 -19.88011 -19.07002 -17.80925 -17.58179 -16.45616 -16.16899 -15.45667 -15.37889 -15.26985 -14.81454 -14.67713 -14.64125 -14.25673 -14.18868 -13.90445 -13.64628 -13.58250 -13.41858 -13.12770 -12.99436 -12.84243 -12.61852 -12.45222 -12.21922 -12.13790 -12.01360 -11.83910 -11.68944 -11.46833 -11.46008 -11.40746 -11.18292 -11.04984 -10.99080 -10.59820 -10.36257 -10.18208 -9.74933 -9.43628 -8.96315 -8.84366 -8.60026 -8.41151 -7.95019 -7.85959 -6.37524 -3.78190 0.85885 1.32424 2.95055 3.20087 3.27844 3.28631 3.34638 3.87774 3.94247 4.00947 4.26099 4.62487 4.64047 4.73034 4.79820 4.92069 5.07691 5.11074 5.16427 5.18766 5.24362 5.31617 5.36229 5.37464 5.43667 5.48981 5.55921 5.58179 5.61935 5.66163 5.69917 5.71549 5.73716 5.93920 5.97750 5.98445 6.01622 6.06221 6.13258 6.27957 6.32244 6.35439 6.49193 6.49396 6.63916 6.86814 7.24948 7.35395 7.58796 7.70350 8.10261 8.40991 8.65971 9.22089 9.58995 10.10659 10.80333 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007444 B = 0.003371 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3760.562806 B = 8303.906330 C =10552.324514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.066 4.066 3 C -0.125 4.125 4 C -0.081 4.081 5 C -0.130 4.130 6 C 0.562 3.438 7 O -0.545 6.545 8 N -0.700 5.700 9 C 0.145 3.855 10 H 0.089 0.911 11 C -0.161 4.161 12 C 0.043 3.957 13 N -0.515 5.515 14 C 0.024 3.976 15 C 0.043 3.957 16 C 0.446 3.554 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.057 4.057 28 C -0.099 4.099 29 C -0.115 4.115 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.402 0.598 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.013 0.987 42 H 0.095 0.905 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.134 0.866 49 H 0.072 0.928 50 H 0.067 0.933 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.047 2.933 19.450 21.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.067 4.067 3 C -0.143 4.143 4 C -0.100 4.100 5 C -0.133 4.133 6 C 0.349 3.651 7 O -0.423 6.423 8 N -0.350 5.350 9 C 0.040 3.960 10 H 0.107 0.893 11 C -0.220 4.220 12 C -0.086 4.086 13 N -0.239 5.239 14 C -0.124 4.124 15 C -0.088 4.088 16 C 0.231 3.769 17 O -0.462 6.462 18 N -0.201 5.201 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.076 4.076 28 C -0.099 4.099 29 C -0.171 4.171 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.238 0.762 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.032 0.968 42 H 0.113 0.887 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.152 0.848 49 H 0.091 0.909 50 H 0.086 0.914 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.654 2.461 19.253 21.252 hybrid contribution 0.861 0.255 -0.968 1.321 sum -7.793 2.716 18.285 20.061 Atomic orbital electron populations 1.20872 0.91139 1.03167 1.02321 1.19953 0.96120 0.92654 0.97940 1.20939 0.93901 0.97639 1.01845 1.21279 0.94448 0.97086 0.97199 1.19918 0.92985 0.94339 1.06061 1.18206 0.87042 0.83894 0.75937 1.90744 1.69859 1.31279 1.50466 1.45637 1.06720 1.08411 1.74273 1.20973 0.80124 0.98758 0.96171 0.89307 1.22148 1.01227 1.02438 0.96138 1.22491 0.97410 0.97279 0.91411 1.61552 1.56874 1.04912 1.00576 1.22512 0.98076 0.87821 1.03959 1.21917 0.96089 0.97502 0.93326 1.19684 0.87558 0.84851 0.84777 1.90474 1.30207 1.42786 1.82765 1.41862 1.29055 1.37152 1.11993 1.19680 1.11286 1.22436 0.89341 0.87979 1.25251 0.96885 0.96048 0.99742 1.69614 1.26136 1.25446 1.33085 0.85876 0.79963 0.77404 0.81154 1.20459 1.20918 1.19431 1.21126 0.93082 0.97869 0.95533 1.19716 0.93378 0.95162 1.01626 1.20820 0.99790 0.93907 1.02616 0.91015 0.91093 0.91300 0.85534 0.85545 0.76244 0.92482 0.91830 0.91631 0.90297 0.93326 0.96804 0.88652 0.92191 0.93499 0.89490 0.77539 0.91904 0.84788 0.90927 0.91389 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.18 36.00 0.33 -0.59 16 2 C -0.07 -0.72 5.89 -104.53 -0.62 -1.33 16 3 C -0.13 -1.38 9.68 -39.64 -0.38 -1.76 16 4 C -0.08 -1.00 9.54 -39.18 -0.37 -1.37 16 5 C -0.13 -1.88 5.87 -104.97 -0.62 -2.50 16 6 C 0.56 9.01 7.74 -12.33 -0.10 8.92 16 7 O -0.54 -10.42 16.00 5.33 0.09 -10.33 16 8 N -0.70 -9.47 4.74 -54.75 -0.26 -9.73 16 9 C 0.15 1.84 2.52 -67.93 -0.17 1.67 16 10 H 0.09 1.36 6.22 -51.93 -0.32 1.04 16 11 C -0.16 -1.64 9.49 37.16 0.35 -1.29 16 12 C 0.04 0.51 4.53 -3.82 -0.02 0.49 16 13 N -0.52 -8.19 4.17 -244.37 -1.02 -9.21 16 14 C 0.02 0.37 9.19 60.07 0.55 0.92 16 15 C 0.04 0.79 5.30 -4.97 -0.03 0.76 16 16 C 0.45 10.73 7.42 -10.99 -0.08 10.65 16 17 O -0.58 -15.53 13.96 5.55 0.08 -15.45 16 18 N -0.56 -14.73 5.29 -10.96 -0.06 -14.78 16 19 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 20 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -25.14 13.05 55.50 0.72 -24.42 16 23 Si 0.93 21.49 29.55 -169.99 -5.02 16.47 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 27 C -0.06 -0.80 9.24 -39.19 -0.36 -1.16 16 28 C -0.10 -1.16 5.87 -104.68 -0.61 -1.77 16 29 C -0.11 -1.02 9.18 36.00 0.33 -0.69 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.51 6.68 -51.93 -0.35 0.16 16 32 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.13 1.32 6.41 -52.49 -0.34 0.98 16 35 H 0.40 4.79 6.64 -40.82 -0.27 4.51 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 39 H 0.08 0.78 7.99 -51.93 -0.42 0.37 16 40 H 0.05 0.53 8.05 -51.93 -0.42 0.12 16 41 H 0.01 0.19 8.13 -51.93 -0.42 -0.24 16 42 H 0.09 1.83 5.79 -51.93 -0.30 1.53 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 45 H 0.09 1.59 6.50 -51.93 -0.34 1.25 16 46 H 0.39 9.91 7.90 -40.82 -0.32 9.58 16 47 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.13 1.89 7.65 -52.49 -0.40 1.49 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 51 H 0.07 0.49 6.69 -51.93 -0.35 0.14 16 LS Contribution 415.23 15.07 6.26 6.26 Total: -1.00 -34.12 415.23 -9.22 -43.34 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -7.97 Total: 15.03 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -2.03 Total: 2.83 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.61 Total: -58.13 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: 0.16 Total: -25.78 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.12 -9.22 -43.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498447169.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.560 kcal (2) G-P(sol) polarization free energy of solvation -34.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds