Wall clock time and date at job start Wed Apr 1 2020 04:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38379 * 119.85514 * 2 1 4 4 C 1.37940 * 120.14877 * 179.76921 * 3 2 1 5 5 C 1.39602 * 119.84908 * 0.50172 * 4 3 2 6 6 C 1.47847 * 120.14228 * 179.72571 * 5 4 3 7 7 O 1.21546 * 119.99538 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99679 * 0.02562 * 6 5 4 9 9 C 1.46498 * 119.99490 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47325 * 34.61018 * 9 8 6 11 11 C 1.52998 * 109.47301 * 274.60506 * 9 8 6 12 12 C 1.53000 * 109.47248 * 154.60629 * 9 8 6 13 13 N 1.46902 * 109.47077 * 305.18981 * 12 9 8 14 14 C 1.46904 * 111.00306 * 163.93576 * 13 12 9 15 15 C 1.46904 * 110.99737 * 287.88571 * 13 12 9 16 16 C 1.50703 * 109.47386 * 169.99856 * 15 13 12 17 17 O 1.21289 * 119.99789 * 0.02562 * 16 15 13 18 18 N 1.34770 * 119.99764 * 179.97438 * 16 15 13 19 19 C 1.37099 * 119.99653 * 179.97438 * 18 16 15 20 20 H 1.08005 * 119.99994 * 0.02562 * 19 18 16 21 21 C 1.38952 * 120.00028 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00272 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99937 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47330 * 89.99597 * 23 21 19 25 25 H 1.48501 * 109.47132 * 210.00074 * 23 21 19 26 26 H 1.48502 * 109.47098 * 329.99812 * 23 21 19 27 27 C 1.39555 * 119.70889 * 359.75035 * 5 4 3 28 28 C 1.37972 * 119.85876 * 359.97438 * 27 5 4 29 29 C 1.50695 * 119.93309 * 179.97438 * 28 27 5 30 30 H 1.09000 * 109.47296 * 269.72380 * 1 2 3 31 31 H 1.08998 * 109.47095 * 149.73050 * 1 2 3 32 32 H 1.08995 * 109.47291 * 29.72917 * 1 2 3 33 33 H 1.08005 * 119.92655 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.07311 * 180.23187 * 4 3 2 35 35 H 0.96995 * 120.00396 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.47764 * 300.00239 * 11 9 8 37 37 H 1.09001 * 109.47246 * 60.00142 * 11 9 8 38 38 H 1.09010 * 109.47294 * 180.02562 * 11 9 8 39 39 H 1.09002 * 109.47318 * 65.18514 * 12 9 8 40 40 H 1.08999 * 109.47703 * 185.18361 * 12 9 8 41 41 H 1.08996 * 109.47083 * 54.88638 * 14 13 12 42 42 H 1.08992 * 109.46802 * 174.89147 * 14 13 12 43 43 H 1.08996 * 109.46805 * 294.88983 * 14 13 12 44 44 H 1.09000 * 109.47355 * 290.00322 * 15 13 12 45 45 H 1.09000 * 109.46926 * 49.99802 * 15 13 12 46 46 H 0.96993 * 120.00653 * 0.02562 * 18 16 15 47 47 H 0.97001 * 119.99998 * 180.02562 * 22 21 19 48 48 H 1.08001 * 120.07101 * 179.97438 * 27 5 4 49 49 H 1.09001 * 109.47470 * 270.02709 * 29 28 27 50 50 H 1.09004 * 109.46963 * 30.02326 * 29 28 27 51 51 H 1.08999 * 109.47262 * 150.02372 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2001 0.0000 4 6 3.5752 1.2072 0.0048 5 6 4.2762 0.0000 -0.0009 6 6 5.7547 0.0001 -0.0020 7 8 6.3623 -1.0526 -0.0074 8 7 6.4285 1.1673 0.0032 9 6 7.8934 1.1673 0.0027 10 1 8.2566 0.3242 -0.5849 11 6 8.4039 1.0449 1.4398 12 6 8.4033 2.4732 -0.6100 13 7 7.8136 2.6514 -1.9437 14 6 7.9627 4.0383 -2.4044 15 6 8.3991 1.7105 -2.9081 16 6 7.6090 1.7491 -4.1908 17 8 6.6525 2.4881 -4.2918 18 7 7.9659 0.9634 -5.2259 19 6 7.2468 0.9981 -6.3926 20 1 6.3945 1.6555 -6.4823 21 6 7.6143 0.1876 -7.4597 22 7 8.6515 -0.6119 -7.3508 23 14 6.6349 0.2355 -9.0497 24 1 7.2097 1.2631 -9.9544 25 1 6.6955 -1.0939 -9.7087 26 1 5.2207 0.5753 -8.7499 27 6 3.5753 -1.2068 -0.0062 28 6 2.1956 -1.1998 -0.0052 29 6 1.4371 -2.5020 -0.0115 30 1 -0.3634 -0.0050 1.0276 31 1 -0.3633 -0.8875 -0.5180 32 1 -0.3633 0.8923 -0.5096 33 1 1.6522 2.1334 -0.0004 34 1 4.1115 2.1446 0.0086 35 1 5.9435 2.0073 0.0072 36 1 8.0408 1.8880 2.0275 37 1 8.0408 0.1145 1.8764 38 1 9.4940 1.0454 1.4395 39 1 8.1180 3.3097 0.0280 40 1 9.4893 2.4351 -0.6951 41 1 9.0143 4.3225 -2.3670 42 1 7.5999 4.1218 -3.4287 43 1 7.3845 4.6996 -1.7590 44 1 9.4326 1.9926 -3.1093 45 1 8.3717 0.7024 -2.4946 46 1 8.7310 0.3727 -5.1453 47 1 8.9083 -1.1774 -8.0959 48 1 4.1118 -2.1441 -0.0111 49 1 1.2539 -2.8108 -1.0406 50 1 2.0235 -3.2665 0.4983 51 1 0.4854 -2.3706 0.5033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498447169.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:09 Heat of formation + Delta-G solvation = -73.458240 kcal Electronic energy + Delta-G solvation = -30886.735747 eV Core-core repulsion = 26784.703579 eV Total energy + Delta-G solvation = -4102.032168 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.37760 -40.45072 -39.78103 -38.24074 -36.16133 -35.58722 -34.52090 -33.29079 -33.06580 -31.92203 -29.60788 -28.67891 -27.98151 -27.49459 -26.61850 -24.23804 -23.38200 -22.88655 -21.91474 -21.01535 -20.81487 -19.86271 -18.64136 -17.89298 -17.54149 -16.68413 -16.67062 -16.39966 -16.27422 -15.96928 -15.91269 -15.64801 -15.35299 -15.13384 -15.10110 -14.93273 -14.62248 -14.17125 -13.98096 -13.72399 -13.61611 -13.47490 -13.41420 -13.34842 -13.09290 -12.93274 -12.89131 -12.83455 -12.69097 -12.61639 -12.47514 -12.38226 -12.27901 -12.14576 -11.91110 -11.69999 -11.44972 -10.97523 -10.28026 -10.09544 -10.01016 -9.79533 -9.50831 -9.21257 -8.47591 -5.96558 -0.13248 0.38716 1.35953 1.38805 1.52223 1.85531 2.04072 2.20608 2.27719 2.78043 2.85943 3.19005 3.35715 3.71331 3.77558 3.82890 3.93112 4.03285 4.12457 4.16772 4.29288 4.31510 4.32439 4.38686 4.50163 4.55936 4.59820 4.65182 4.71166 4.75423 4.77088 4.79845 4.82096 4.85143 4.87081 4.96857 5.04604 5.20580 5.21659 5.27587 5.28168 5.33855 5.38898 5.42721 5.55416 5.61894 5.86246 5.98438 6.05612 6.20699 6.58590 6.59384 7.11390 7.25498 7.54780 8.10127 8.70212 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007444 B = 0.003371 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3760.562806 B = 8303.906330 C =10552.324514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.066 4.066 3 C -0.129 4.129 4 C -0.086 4.086 5 C -0.158 4.158 6 C 0.553 3.447 7 O -0.590 6.590 8 N -0.690 5.690 9 C 0.141 3.859 10 H 0.057 0.943 11 C -0.150 4.150 12 C 0.050 3.950 13 N -0.531 5.531 14 C 0.029 3.971 15 C 0.057 3.943 16 C 0.443 3.557 17 O -0.608 6.608 18 N -0.578 5.578 19 C -0.331 4.331 20 H 0.080 0.920 21 C -0.015 4.015 22 N -0.923 5.923 23 Si 0.993 3.007 24 H -0.268 1.268 25 H -0.272 1.272 26 H -0.273 1.273 27 C -0.082 4.082 28 C -0.107 4.107 29 C -0.114 4.114 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.155 0.845 34 H 0.143 0.857 35 H 0.410 0.590 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.034 0.966 42 H 0.051 0.949 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.393 0.607 47 H 0.277 0.723 48 H 0.117 0.883 49 H 0.074 0.926 50 H 0.068 0.932 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.046 4.536 20.482 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.067 4.067 3 C -0.147 4.147 4 C -0.105 4.105 5 C -0.161 4.161 6 C 0.342 3.658 7 O -0.472 6.472 8 N -0.340 5.340 9 C 0.036 3.964 10 H 0.075 0.925 11 C -0.209 4.209 12 C -0.078 4.078 13 N -0.255 5.255 14 C -0.118 4.118 15 C -0.074 4.074 16 C 0.231 3.769 17 O -0.494 6.494 18 N -0.215 5.215 19 C -0.461 4.461 20 H 0.098 0.902 21 C -0.215 4.215 22 N -0.564 5.564 23 Si 0.817 3.183 24 H -0.193 1.193 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.101 4.101 28 C -0.107 4.107 29 C -0.170 4.170 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.173 0.827 34 H 0.160 0.840 35 H 0.248 0.752 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.130 0.870 40 H 0.086 0.914 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.105 0.895 46 H 0.226 0.774 47 H 0.086 0.914 48 H 0.135 0.865 49 H 0.092 0.908 50 H 0.087 0.913 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.633 4.100 20.311 22.850 hybrid contribution 1.130 -0.197 -1.221 1.676 sum -8.503 3.904 19.089 21.259 Atomic orbital electron populations 1.20957 0.88515 1.04125 1.03764 1.20412 0.98049 0.92096 0.96124 1.21343 0.93497 0.99035 1.00783 1.21497 0.95324 0.96753 0.96892 1.19984 0.92276 0.95576 1.08284 1.18595 0.87931 0.83909 0.75400 1.90703 1.70830 1.32808 1.52874 1.45634 1.07265 1.08066 1.73026 1.21082 0.79550 0.98251 0.97518 0.92518 1.22054 1.02345 1.02256 0.94238 1.22570 0.98339 0.97659 0.89221 1.61490 1.57811 1.04671 1.01538 1.22411 0.99599 0.87869 1.01957 1.21707 0.96084 0.98588 0.91019 1.20700 0.87233 0.83127 0.85889 1.90446 1.31658 1.43629 1.83644 1.41967 1.29265 1.37997 1.12275 1.19661 1.11786 1.23493 0.91147 0.90207 1.26073 0.97727 0.95158 1.02501 1.69686 1.26934 1.25620 1.34189 0.84926 0.78204 0.78054 0.77148 1.19288 1.19647 1.19754 1.21199 0.94387 0.97274 0.97206 1.20048 0.92620 0.97017 1.01014 1.20877 1.00505 0.92570 1.03054 0.89137 0.90342 0.90201 0.82706 0.83983 0.75211 0.90232 0.93968 0.89715 0.87043 0.91354 0.94772 0.93027 0.89550 0.91414 0.89521 0.77401 0.91361 0.86503 0.90765 0.91339 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.18 71.23 0.65 -0.82 16 2 C -0.07 -1.34 5.89 -19.81 -0.12 -1.46 16 3 C -0.13 -2.63 9.68 22.23 0.22 -2.42 16 4 C -0.09 -2.08 9.54 22.53 0.21 -1.87 16 5 C -0.16 -4.80 5.87 -20.09 -0.12 -4.92 16 6 C 0.55 18.70 7.74 86.79 0.67 19.37 16 7 O -0.59 -24.30 16.00 -3.86 -0.06 -24.36 16 8 N -0.69 -18.66 4.74 -445.42 -2.11 -20.78 16 9 C 0.14 3.47 2.52 44.99 0.11 3.59 16 10 H 0.06 1.78 6.22 -2.39 -0.01 1.77 16 11 C -0.15 -2.84 9.49 71.98 0.68 -2.15 16 12 C 0.05 1.05 4.53 86.30 0.39 1.44 16 13 N -0.53 -16.11 4.17 -927.04 -3.87 -19.98 16 14 C 0.03 0.84 9.19 127.69 1.17 2.02 16 15 C 0.06 2.11 5.30 85.56 0.45 2.56 16 16 C 0.44 21.93 7.42 87.66 0.65 22.58 16 17 O -0.61 -33.71 13.96 -3.06 -0.04 -33.75 16 18 N -0.58 -31.22 5.29 -306.99 -1.62 -32.84 16 19 C -0.33 -19.49 9.68 84.04 0.81 -18.68 16 20 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 21 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 22 N -0.92 -51.95 13.05 21.66 0.28 -51.66 16 23 Si 0.99 44.30 29.55 68.60 2.03 46.33 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 27 C -0.08 -2.42 9.24 22.52 0.21 -2.21 16 28 C -0.11 -2.51 5.87 -19.90 -0.12 -2.63 16 29 C -0.11 -1.95 9.18 71.23 0.65 -1.30 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.89 6.68 -2.39 -0.02 0.88 16 32 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 33 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.14 2.81 6.41 -2.91 -0.02 2.79 16 35 H 0.41 9.38 6.64 -92.71 -0.62 8.77 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.11 1.70 7.99 -2.39 -0.02 1.68 16 40 H 0.07 1.24 8.05 -2.39 -0.02 1.22 16 41 H 0.03 0.84 8.13 -2.39 -0.02 0.82 16 42 H 0.05 1.97 5.79 -2.39 -0.01 1.96 16 43 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 45 H 0.09 3.22 6.50 -2.39 -0.02 3.20 16 46 H 0.39 20.57 7.90 -92.71 -0.73 19.83 16 47 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 48 H 0.12 3.71 7.65 -2.91 -0.02 3.69 16 49 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 51 H 0.09 1.12 6.69 -2.39 -0.02 1.11 16 Total: -1.00 -78.35 415.23 1.22 -77.13 By element: Atomic # 1 Polarization: 47.58 SS G_CDS: -0.39 Total: 47.19 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 7.01 Total: 12.73 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -7.32 Total: -125.27 kcal Atomic # 8 Polarization: -58.01 SS G_CDS: -0.10 Total: -58.11 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -78.35 1.22 -77.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498447169.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.673 kcal (2) G-P(sol) polarization free energy of solvation -78.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds