Wall clock time and date at job start Wed Apr 1 2020 04:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38388 * 119.92623 * 2 1 4 4 C 1.38332 * 120.29094 * 179.97438 * 3 2 1 5 5 C 1.37976 * 120.14695 * 0.02562 * 4 3 2 6 6 C 1.39548 * 119.85200 * 359.97438 * 5 4 3 7 7 C 1.47856 * 120.14268 * 179.97438 * 6 5 4 8 8 O 1.21558 * 119.99755 * 173.80996 * 7 6 5 9 9 N 1.34772 * 119.99886 * 353.80813 * 7 6 5 10 10 C 1.46504 * 119.99771 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.46733 * 324.99729 * 10 9 7 12 12 C 1.52996 * 109.47334 * 84.99993 * 10 9 7 13 13 C 1.52998 * 109.46811 * 205.00150 * 10 9 7 14 14 H 1.09003 * 109.47128 * 299.99337 * 13 10 9 15 15 C 1.52996 * 109.47613 * 59.99606 * 13 10 9 16 16 N 1.46900 * 109.46935 * 179.97438 * 13 10 9 17 17 C 1.46905 * 110.99890 * 155.00027 * 16 13 10 18 18 C 1.50703 * 109.46899 * 179.97438 * 17 16 13 19 19 O 1.21293 * 120.00120 * 359.97438 * 18 17 16 20 20 N 1.34779 * 120.00150 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00092 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00265 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99834 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99957 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99975 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46804 * 59.99920 * 25 23 21 27 27 H 1.48498 * 109.47105 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47084 * 300.00585 * 25 23 21 29 29 C 1.37934 * 119.93159 * 180.24917 * 2 1 3 30 30 C 1.50699 * 120.07243 * 0.02613 * 29 2 1 31 31 H 1.09003 * 109.46828 * 90.00391 * 1 2 3 32 32 H 1.08996 * 109.46938 * 210.00305 * 1 2 3 33 33 H 1.08992 * 109.47074 * 330.00440 * 1 2 3 34 34 H 1.08002 * 119.85250 * 359.97438 * 3 2 1 35 35 H 1.08002 * 119.92501 * 179.97438 * 4 3 2 36 36 H 1.08008 * 120.07287 * 180.02562 * 5 4 3 37 37 H 0.96999 * 120.00289 * 359.97438 * 9 7 6 38 38 H 1.09005 * 109.46669 * 299.99728 * 12 10 9 39 39 H 1.08994 * 109.47555 * 59.99907 * 12 10 9 40 40 H 1.08996 * 109.46947 * 180.02562 * 12 10 9 41 41 H 1.08998 * 109.47519 * 300.00339 * 15 13 10 42 42 H 1.09003 * 109.47093 * 59.99710 * 15 13 10 43 43 H 1.09002 * 109.47622 * 179.97438 * 15 13 10 44 44 H 1.00891 * 111.00513 * 31.04384 * 16 13 10 45 45 H 1.09000 * 109.47082 * 299.99377 * 17 16 13 46 46 H 1.08991 * 109.47443 * 60.00173 * 17 16 13 47 47 H 0.96995 * 119.99482 * 0.02562 * 20 18 17 48 48 H 0.97001 * 119.99768 * 179.97438 * 24 23 21 49 49 H 1.08998 * 109.47363 * 263.68916 * 30 29 2 50 50 H 1.09001 * 109.47429 * 23.68984 * 30 29 2 51 51 H 1.09000 * 109.47548 * 143.69081 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5807 1.2082 0.0005 5 6 4.2812 0.0195 0.0005 6 6 3.5912 -1.1935 0.0005 7 6 4.3354 -2.4711 0.0000 8 8 3.7370 -3.5230 0.1135 9 7 5.6772 -2.4692 -0.1264 10 6 6.4145 -3.7352 -0.1276 11 1 5.9293 -4.4388 0.5490 12 6 6.4287 -4.3159 -1.5430 13 6 7.8512 -3.4889 0.3371 14 1 8.3364 -2.7854 -0.3395 15 6 7.8371 -2.9082 1.7525 16 7 8.5904 -4.7584 0.3366 17 6 10.0336 -4.5272 0.1883 18 6 10.7571 -5.8492 0.1928 19 8 10.1321 -6.8822 0.3086 20 7 12.0987 -5.8836 0.0681 21 6 12.7568 -7.0862 0.0716 22 1 12.2002 -8.0062 0.1738 23 6 14.1400 -7.1216 -0.0565 24 7 14.8172 -6.0023 -0.1804 25 14 15.0369 -8.7603 -0.0510 26 1 14.5506 -9.5944 -1.1793 27 1 16.4957 -8.5266 -0.2003 28 1 14.7771 -9.4624 1.2315 29 6 2.1953 -1.1954 -0.0052 30 6 1.4419 -2.5005 -0.0115 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5137 34 1 1.6538 2.1326 -0.0004 35 1 4.1135 2.1476 0.0001 36 1 5.3613 0.0277 0.0014 37 1 6.1546 -1.6298 -0.2174 38 1 5.4051 -4.4914 -1.8739 39 1 6.9138 -3.6124 -2.2195 40 1 6.9769 -5.2580 -1.5436 41 1 7.2885 -1.9663 1.7534 42 1 7.3520 -3.6117 2.4291 43 1 8.8607 -2.7331 2.0838 44 1 8.2474 -5.3763 -0.3834 45 1 10.2241 -4.0115 -0.7529 46 1 10.3905 -3.9154 1.0166 47 1 12.5984 -5.0575 -0.0242 48 1 15.7828 -6.0271 -0.2694 49 1 1.3576 -2.8763 1.0082 50 1 0.4453 -2.3428 -0.4240 51 1 1.9776 -3.2264 -0.6231 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505741867.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:03 Heat of formation + Delta-G solvation = -52.546571 kcal Electronic energy + Delta-G solvation = -29802.691616 eV Core-core repulsion = 25701.566245 eV Total energy + Delta-G solvation = -4101.125370 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.82391 -39.22334 -38.35826 -37.21121 -34.72917 -33.93694 -33.53757 -32.53154 -31.27355 -30.68203 -29.85033 -27.93547 -26.82151 -26.38711 -24.47636 -24.13383 -22.78446 -21.34875 -20.49451 -20.35178 -19.30199 -17.99243 -17.74982 -16.70561 -16.35151 -15.94457 -15.68696 -15.48415 -15.36784 -14.99794 -14.52812 -14.34181 -14.20559 -13.88533 -13.72688 -13.64720 -13.51765 -13.36557 -13.01714 -12.99851 -12.80986 -12.49681 -12.39191 -12.24793 -12.09572 -12.00883 -11.91456 -11.67274 -11.57675 -11.43350 -11.32138 -11.26609 -11.02091 -10.62348 -10.43951 -10.21145 -9.79270 -9.49925 -9.39316 -9.12802 -8.94658 -8.45927 -8.10707 -7.96120 -6.41654 -3.82412 0.51339 0.94291 2.60979 2.85888 3.20603 3.26190 3.30890 3.47042 3.90621 4.10183 4.30350 4.32194 4.35541 4.45244 4.57474 4.61869 4.81839 4.84341 4.86402 5.10863 5.14239 5.17082 5.20522 5.25116 5.26073 5.36412 5.40461 5.48338 5.53341 5.59788 5.63823 5.66549 5.67241 5.77937 5.87140 5.90111 5.95410 5.96257 5.97613 6.05131 6.13282 6.22127 6.25794 6.33563 6.36562 6.53194 7.17805 7.28560 7.55244 7.63249 8.01690 8.06146 8.61284 9.17917 9.54102 10.05680 10.75966 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.031982 B = 0.001643 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.293472 B =17036.634905 C =17580.387206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.099 4.099 3 C -0.093 4.093 4 C -0.131 4.131 5 C -0.088 4.088 6 C -0.135 4.135 7 C 0.559 3.441 8 O -0.527 6.527 9 N -0.717 5.717 10 C 0.142 3.858 11 H 0.101 0.899 12 C -0.170 4.170 13 C 0.078 3.922 14 H 0.046 0.954 15 C -0.140 4.140 16 N -0.660 5.660 17 C 0.052 3.948 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 C -0.022 4.022 30 C -0.124 4.124 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.397 0.603 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.352 0.648 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.076 0.924 50 H 0.059 0.941 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.066 19.280 -1.432 30.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.099 4.099 3 C -0.111 4.111 4 C -0.149 4.149 5 C -0.107 4.107 6 C -0.138 4.138 7 C 0.347 3.653 8 O -0.405 6.405 9 N -0.369 5.369 10 C 0.037 3.963 11 H 0.119 0.881 12 C -0.228 4.228 13 C -0.033 4.033 14 H 0.064 0.936 15 C -0.198 4.198 16 N -0.296 5.296 17 C -0.081 4.081 18 C 0.226 3.774 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.023 4.023 30 C -0.180 4.180 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.232 0.768 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.174 0.826 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.078 0.922 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -24.652 17.768 -0.616 30.394 hybrid contribution 1.410 0.644 -1.030 1.861 sum -23.242 18.412 -1.646 29.697 Atomic orbital electron populations 1.20838 0.90760 1.03111 1.02547 1.19797 0.96425 0.92312 1.01413 1.21233 0.94329 0.97579 0.97946 1.21052 0.94259 0.98013 1.01624 1.21277 0.99703 0.91809 0.97871 1.19797 0.93748 0.93011 1.07260 1.18228 0.81948 0.88780 0.76386 1.90745 1.67619 1.32962 1.49194 1.45931 1.06608 1.09811 1.74525 1.21094 0.91701 0.85656 0.97853 0.88083 1.22260 1.02964 1.01524 0.96101 1.21735 0.92102 0.92164 0.97316 0.93618 1.21807 1.02071 0.99785 0.96102 1.60173 1.02200 1.11578 1.55678 1.21722 0.88472 0.97292 1.00621 1.19789 0.83113 0.90007 0.84530 1.90530 1.66538 1.34577 1.54975 1.41845 1.04879 1.09556 1.63697 1.19666 0.89650 0.86596 1.47064 0.87947 1.25258 0.96582 0.98791 0.97262 1.69603 1.08351 1.26441 1.49948 0.85913 0.77789 0.81419 0.79073 1.19919 1.20989 1.19876 1.19913 0.92033 0.95773 0.94624 1.21135 0.98961 0.94169 1.03762 0.91011 0.90922 0.91432 0.85666 0.85415 0.85679 0.76750 0.91649 0.92525 0.90738 0.93010 0.91679 0.92261 0.82559 0.93838 0.89538 0.77483 0.91839 0.90584 0.92182 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 9.18 36.01 0.33 -0.30 16 2 C -0.10 -0.77 5.87 -104.68 -0.61 -1.38 16 3 C -0.09 -0.62 9.69 -39.49 -0.38 -1.00 16 4 C -0.13 -0.86 10.03 -39.64 -0.40 -1.26 16 5 C -0.09 -0.66 9.52 -39.19 -0.37 -1.03 16 6 C -0.14 -1.32 5.87 -104.97 -0.62 -1.94 16 7 C 0.56 6.39 7.67 -12.33 -0.09 6.29 16 8 O -0.53 -7.57 13.01 5.32 0.07 -7.50 16 9 N -0.72 -6.90 4.33 -54.75 -0.24 -7.14 16 10 C 0.14 1.62 2.29 -67.93 -0.16 1.47 16 11 H 0.10 1.40 7.58 -51.93 -0.39 1.01 16 12 C -0.17 -1.93 9.25 37.16 0.34 -1.59 16 13 C 0.08 0.92 2.28 -67.72 -0.15 0.77 16 14 H 0.05 0.49 7.80 -51.93 -0.41 0.09 16 15 C -0.14 -1.58 9.26 37.16 0.34 -1.24 16 16 N -0.66 -10.50 5.93 -107.99 -0.64 -11.14 16 17 C 0.05 0.89 5.97 -4.97 -0.03 0.86 16 18 C 0.44 10.37 7.82 -10.98 -0.09 10.28 16 19 O -0.58 -15.85 15.78 5.55 0.09 -15.77 16 20 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 21 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.46 13.05 55.50 0.72 -23.73 16 25 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 29 C -0.02 -0.21 5.91 -104.23 -0.62 -0.83 16 30 C -0.12 -1.18 8.08 36.01 0.29 -0.89 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.38 6.58 -51.93 -0.34 0.04 16 33 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 34 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 36 H 0.13 0.66 6.45 -52.48 -0.34 0.32 16 37 H 0.40 2.85 6.46 -40.82 -0.26 2.58 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.90 6.21 -51.93 -0.32 0.58 16 41 H 0.05 0.47 7.45 -51.93 -0.39 0.08 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 44 H 0.35 5.80 5.87 -39.30 -0.23 5.57 16 45 H 0.04 0.67 8.06 -51.93 -0.42 0.26 16 46 H 0.09 1.39 7.43 -51.93 -0.39 1.00 16 47 H 0.39 9.44 7.90 -40.82 -0.32 9.11 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.06 0.44 6.35 -51.93 -0.33 0.11 16 51 H 0.10 1.10 5.86 -51.93 -0.30 0.80 16 LS Contribution 409.98 15.07 6.18 6.18 Total: -1.00 -33.04 409.98 -9.07 -42.11 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -7.72 Total: 15.00 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -2.45 Total: 0.21 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.21 Total: -56.31 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: 0.16 Total: -23.26 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.04 -9.07 -42.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505741867.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.433 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds