Wall clock time and date at job start Wed Apr 1 2020 04:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38388 * 119.92623 * 2 1 4 4 C 1.38332 * 120.29094 * 179.97438 * 3 2 1 5 5 C 1.37976 * 120.14695 * 0.02562 * 4 3 2 6 6 C 1.39548 * 119.85200 * 359.97438 * 5 4 3 7 7 C 1.47856 * 120.14268 * 179.97438 * 6 5 4 8 8 O 1.21558 * 119.99755 * 173.80996 * 7 6 5 9 9 N 1.34772 * 119.99886 * 353.80813 * 7 6 5 10 10 C 1.46504 * 119.99771 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.46733 * 324.99729 * 10 9 7 12 12 C 1.52996 * 109.47334 * 84.99993 * 10 9 7 13 13 C 1.52998 * 109.46811 * 205.00150 * 10 9 7 14 14 H 1.09003 * 109.47128 * 299.99337 * 13 10 9 15 15 C 1.52996 * 109.47613 * 59.99606 * 13 10 9 16 16 N 1.46900 * 109.46935 * 179.97438 * 13 10 9 17 17 C 1.46905 * 110.99890 * 155.00027 * 16 13 10 18 18 C 1.50703 * 109.46899 * 179.97438 * 17 16 13 19 19 O 1.21293 * 120.00120 * 359.97438 * 18 17 16 20 20 N 1.34779 * 120.00150 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00092 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00265 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99834 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99957 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99975 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46804 * 59.99920 * 25 23 21 27 27 H 1.48498 * 109.47105 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47084 * 300.00585 * 25 23 21 29 29 C 1.37934 * 119.93159 * 180.24917 * 2 1 3 30 30 C 1.50699 * 120.07243 * 0.02613 * 29 2 1 31 31 H 1.09003 * 109.46828 * 90.00391 * 1 2 3 32 32 H 1.08996 * 109.46938 * 210.00305 * 1 2 3 33 33 H 1.08992 * 109.47074 * 330.00440 * 1 2 3 34 34 H 1.08002 * 119.85250 * 359.97438 * 3 2 1 35 35 H 1.08002 * 119.92501 * 179.97438 * 4 3 2 36 36 H 1.08008 * 120.07287 * 180.02562 * 5 4 3 37 37 H 0.96999 * 120.00289 * 359.97438 * 9 7 6 38 38 H 1.09005 * 109.46669 * 299.99728 * 12 10 9 39 39 H 1.08994 * 109.47555 * 59.99907 * 12 10 9 40 40 H 1.08996 * 109.46947 * 180.02562 * 12 10 9 41 41 H 1.08998 * 109.47519 * 300.00339 * 15 13 10 42 42 H 1.09003 * 109.47093 * 59.99710 * 15 13 10 43 43 H 1.09002 * 109.47622 * 179.97438 * 15 13 10 44 44 H 1.00891 * 111.00513 * 31.04384 * 16 13 10 45 45 H 1.09000 * 109.47082 * 299.99377 * 17 16 13 46 46 H 1.08991 * 109.47443 * 60.00173 * 17 16 13 47 47 H 0.96995 * 119.99482 * 0.02562 * 20 18 17 48 48 H 0.97001 * 119.99768 * 179.97438 * 24 23 21 49 49 H 1.08998 * 109.47363 * 263.68916 * 30 29 2 50 50 H 1.09001 * 109.47429 * 23.68984 * 30 29 2 51 51 H 1.09000 * 109.47548 * 143.69081 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5807 1.2082 0.0005 5 6 4.2812 0.0195 0.0005 6 6 3.5912 -1.1935 0.0005 7 6 4.3354 -2.4711 0.0000 8 8 3.7370 -3.5230 0.1135 9 7 5.6772 -2.4692 -0.1264 10 6 6.4145 -3.7352 -0.1276 11 1 5.9293 -4.4388 0.5490 12 6 6.4287 -4.3159 -1.5430 13 6 7.8512 -3.4889 0.3371 14 1 8.3364 -2.7854 -0.3395 15 6 7.8371 -2.9082 1.7525 16 7 8.5904 -4.7584 0.3366 17 6 10.0336 -4.5272 0.1883 18 6 10.7571 -5.8492 0.1928 19 8 10.1321 -6.8822 0.3086 20 7 12.0987 -5.8836 0.0681 21 6 12.7568 -7.0862 0.0716 22 1 12.2002 -8.0062 0.1738 23 6 14.1400 -7.1216 -0.0565 24 7 14.8172 -6.0023 -0.1804 25 14 15.0369 -8.7603 -0.0510 26 1 14.5506 -9.5944 -1.1793 27 1 16.4957 -8.5266 -0.2003 28 1 14.7771 -9.4624 1.2315 29 6 2.1953 -1.1954 -0.0052 30 6 1.4419 -2.5005 -0.0115 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5137 34 1 1.6538 2.1326 -0.0004 35 1 4.1135 2.1476 0.0001 36 1 5.3613 0.0277 0.0014 37 1 6.1546 -1.6298 -0.2174 38 1 5.4051 -4.4914 -1.8739 39 1 6.9138 -3.6124 -2.2195 40 1 6.9769 -5.2580 -1.5436 41 1 7.2885 -1.9663 1.7534 42 1 7.3520 -3.6117 2.4291 43 1 8.8607 -2.7331 2.0838 44 1 8.2474 -5.3763 -0.3834 45 1 10.2241 -4.0115 -0.7529 46 1 10.3905 -3.9154 1.0166 47 1 12.5984 -5.0575 -0.0242 48 1 15.7828 -6.0271 -0.2694 49 1 1.3576 -2.8763 1.0082 50 1 0.4453 -2.3428 -0.4240 51 1 1.9776 -3.2264 -0.6231 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505741867.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:01 Heat of formation + Delta-G solvation = -75.098000 kcal Electronic energy + Delta-G solvation = -29803.669519 eV Core-core repulsion = 25701.566245 eV Total energy + Delta-G solvation = -4102.103274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.58893 -40.31244 -39.74822 -38.38113 -36.07676 -35.53267 -34.28732 -33.29402 -33.16584 -31.73786 -30.82574 -28.60159 -27.97196 -27.36097 -25.92199 -25.19778 -23.70113 -21.99132 -21.39006 -21.22524 -21.05314 -19.92594 -18.67734 -17.74017 -17.56187 -17.00374 -16.57764 -16.48399 -16.35449 -16.28050 -15.93080 -15.63013 -15.40889 -15.10349 -14.84822 -14.62236 -14.35205 -14.15990 -14.10077 -13.90270 -13.62940 -13.53647 -13.47637 -13.32955 -13.16391 -12.94878 -12.87693 -12.73222 -12.63657 -12.60749 -12.49391 -12.42797 -12.33047 -12.12123 -11.80081 -11.62691 -11.50076 -10.66950 -10.34159 -10.24403 -10.01252 -9.75907 -9.51838 -9.36200 -8.46357 -5.94922 -0.11213 0.39099 1.39959 1.42057 1.52726 1.86235 1.99223 2.05870 2.30369 2.83926 2.97017 3.20976 3.49741 3.53502 3.71427 3.82581 3.91740 3.94497 4.10033 4.15258 4.27925 4.30693 4.38656 4.40792 4.46063 4.54890 4.59516 4.66503 4.69876 4.73016 4.78071 4.83581 4.84258 4.89886 4.95062 4.97976 4.99223 5.16908 5.19856 5.28829 5.37368 5.38249 5.41321 5.45689 5.51147 5.66708 5.89430 5.99446 6.10163 6.36600 6.51061 6.60727 7.13034 7.20031 7.56586 8.12367 8.70628 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.031982 B = 0.001643 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.293472 B =17036.634905 C =17580.387206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.107 4.107 3 C -0.092 4.092 4 C -0.130 4.130 5 C -0.089 4.089 6 C -0.156 4.156 7 C 0.554 3.446 8 O -0.567 6.567 9 N -0.702 5.702 10 C 0.151 3.849 11 H 0.071 0.929 12 C -0.164 4.164 13 C 0.084 3.916 14 H 0.073 0.927 15 C -0.137 4.137 16 N -0.679 5.679 17 C 0.067 3.933 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.571 5.571 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.918 5.918 25 Si 0.992 3.008 26 H -0.272 1.272 27 H -0.269 1.269 28 H -0.274 1.274 29 C -0.047 4.047 30 C -0.118 4.118 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.412 0.588 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.346 0.654 45 H 0.072 0.928 46 H 0.106 0.894 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.063 0.937 50 H 0.077 0.923 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.824 22.494 -1.809 32.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.107 4.107 3 C -0.110 4.110 4 C -0.148 4.148 5 C -0.107 4.107 6 C -0.159 4.159 7 C 0.344 3.656 8 O -0.447 6.447 9 N -0.355 5.355 10 C 0.045 3.955 11 H 0.089 0.911 12 C -0.223 4.223 13 C -0.026 4.026 14 H 0.090 0.910 15 C -0.195 4.195 16 N -0.315 5.315 17 C -0.065 4.065 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.209 5.209 21 C -0.466 4.466 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.559 5.559 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.199 1.199 29 C -0.048 4.048 30 C -0.174 4.174 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.170 0.830 35 H 0.174 0.826 36 H 0.165 0.835 37 H 0.251 0.749 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.168 0.832 45 H 0.090 0.910 46 H 0.124 0.876 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.096 0.904 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.393 21.046 -0.995 32.232 hybrid contribution 1.253 -0.284 -0.903 1.571 sum -23.140 20.761 -1.899 31.146 Atomic orbital electron populations 1.20884 0.89383 1.03775 1.03214 1.20072 0.97603 0.92050 1.00989 1.21627 0.94781 0.98123 0.96444 1.21444 0.94444 0.98723 1.00196 1.21549 1.00915 0.91178 0.97084 1.19788 0.93931 0.92906 1.09309 1.18629 0.82275 0.89105 0.75605 1.90733 1.68443 1.34522 1.51030 1.45722 1.06111 1.09769 1.73926 1.20820 0.91483 0.85982 0.97190 0.91087 1.22192 1.02270 1.01485 0.96346 1.21760 0.91621 0.90840 0.98367 0.90959 1.21808 1.02254 1.00417 0.95058 1.60161 1.01727 1.13710 1.55916 1.21580 0.88603 0.93520 1.02803 1.20904 0.82599 0.91910 0.82224 1.90501 1.67302 1.37008 1.56314 1.41900 1.05663 1.08977 1.64327 1.19631 0.90534 0.86957 1.49470 0.90438 1.26007 0.96661 1.02207 0.96205 1.69658 1.08839 1.27846 1.49559 0.85008 0.77159 0.77419 0.78860 1.19749 1.19377 1.19891 1.20055 0.92353 0.96261 0.96143 1.21002 0.99694 0.94103 1.02571 0.90264 0.91304 0.89767 0.83020 0.82568 0.83455 0.74931 0.92761 0.90778 0.91828 0.90329 0.93813 0.92206 0.83222 0.91029 0.87626 0.76888 0.91278 0.91852 0.90446 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.18 71.24 0.65 -0.41 16 2 C -0.11 -1.49 5.87 -19.90 -0.12 -1.61 16 3 C -0.09 -0.94 9.69 22.33 0.22 -0.73 16 4 C -0.13 -1.26 10.03 22.23 0.22 -1.03 16 5 C -0.09 -1.11 9.52 22.52 0.21 -0.89 16 6 C -0.16 -2.97 5.87 -20.09 -0.12 -3.09 16 7 C 0.55 12.88 7.67 86.79 0.67 13.55 16 8 O -0.57 -17.41 13.01 -3.90 -0.05 -17.46 16 9 N -0.70 -12.84 4.33 -445.40 -1.93 -14.77 16 10 C 0.15 3.43 2.29 44.99 0.10 3.53 16 11 H 0.07 2.08 7.58 -2.39 -0.02 2.06 16 12 C -0.16 -3.73 9.25 71.98 0.67 -3.07 16 13 C 0.08 1.86 2.28 44.91 0.10 1.96 16 14 H 0.07 1.28 7.80 -2.39 -0.02 1.26 16 15 C -0.14 -2.87 9.26 71.98 0.67 -2.20 16 16 N -0.68 -21.19 5.93 -495.58 -2.94 -24.13 16 17 C 0.07 2.23 5.97 85.56 0.51 2.74 16 18 C 0.44 20.71 7.82 87.66 0.69 21.40 16 19 O -0.62 -35.03 15.78 -3.07 -0.05 -35.08 16 20 N -0.57 -29.19 5.29 -306.97 -1.62 -30.81 16 21 C -0.34 -19.18 9.68 84.04 0.81 -18.36 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 24 N -0.92 -49.20 13.05 21.66 0.28 -48.91 16 25 Si 0.99 43.04 29.55 68.60 2.03 45.06 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 28 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 29 C -0.05 -0.90 5.91 -19.61 -0.12 -1.01 16 30 C -0.12 -2.39 8.08 71.24 0.58 -1.81 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.67 6.58 -2.39 -0.02 0.66 16 33 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 34 H 0.15 0.71 8.06 -2.91 -0.02 0.69 16 35 H 0.16 0.61 8.06 -2.91 -0.02 0.58 16 36 H 0.15 1.03 6.45 -2.91 -0.02 1.01 16 37 H 0.41 4.85 6.46 -92.71 -0.60 4.25 16 38 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.06 1.59 6.21 -2.39 -0.01 1.57 16 41 H 0.08 1.20 7.45 -2.39 -0.02 1.18 16 42 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 1.25 7.45 -2.39 -0.02 1.24 16 44 H 0.35 11.52 5.87 -89.70 -0.53 11.00 16 45 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16 46 H 0.11 3.14 7.43 -2.39 -0.02 3.12 16 47 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 48 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 49 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.08 1.19 6.35 -2.39 -0.02 1.18 16 51 H 0.07 1.80 5.86 -2.39 -0.01 1.78 16 Total: -1.00 -74.62 409.98 1.05 -73.57 By element: Atomic # 1 Polarization: 44.57 SS G_CDS: -0.88 Total: 43.69 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 6.21 Total: 8.85 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -6.21 Total: -118.63 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -0.10 Total: -52.54 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -74.62 1.05 -73.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505741867.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.528 kcal (2) G-P(sol) polarization free energy of solvation -74.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds