Wall clock time and date at job start Wed Apr 1 2020 04:20:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.38388 * 119.92623 * 2 1
4 4 C 1.38332 * 120.29094 * 179.97438 * 3 2 1
5 5 C 1.37976 * 120.14695 * 0.02562 * 4 3 2
6 6 C 1.39548 * 119.85200 * 359.97438 * 5 4 3
7 7 C 1.47856 * 120.14268 * 179.97438 * 6 5 4
8 8 O 1.21558 * 119.99755 * 173.80996 * 7 6 5
9 9 N 1.34772 * 119.99886 * 353.80813 * 7 6 5
10 10 C 1.46504 * 119.99771 * 180.02562 * 9 7 6
11 11 H 1.09003 * 109.46733 * 324.99729 * 10 9 7
12 12 C 1.52996 * 109.47334 * 84.99993 * 10 9 7
13 13 C 1.52998 * 109.46811 * 205.00150 * 10 9 7
14 14 H 1.09003 * 109.47128 * 299.99337 * 13 10 9
15 15 C 1.52996 * 109.47613 * 59.99606 * 13 10 9
16 16 N 1.46900 * 109.46935 * 179.97438 * 13 10 9
17 17 C 1.46905 * 110.99890 * 155.00027 * 16 13 10
18 18 C 1.50703 * 109.46899 * 179.97438 * 17 16 13
19 19 O 1.21293 * 120.00120 * 359.97438 * 18 17 16
20 20 N 1.34779 * 120.00150 * 179.97438 * 18 17 16
21 21 C 1.37093 * 120.00092 * 180.02562 * 20 18 17
22 22 H 1.08004 * 120.00265 * 0.02562 * 21 20 18
23 23 C 1.38956 * 119.99834 * 180.02562 * 21 20 18
24 24 N 1.31409 * 119.99957 * 0.02562 * 23 21 20
25 25 Si 1.86802 * 119.99975 * 179.97438 * 23 21 20
26 26 H 1.48501 * 109.46804 * 59.99920 * 25 23 21
27 27 H 1.48498 * 109.47105 * 180.02562 * 25 23 21
28 28 H 1.48503 * 109.47084 * 300.00585 * 25 23 21
29 29 C 1.37934 * 119.93159 * 180.24917 * 2 1 3
30 30 C 1.50699 * 120.07243 * 0.02613 * 29 2 1
31 31 H 1.09003 * 109.46828 * 90.00391 * 1 2 3
32 32 H 1.08996 * 109.46938 * 210.00305 * 1 2 3
33 33 H 1.08992 * 109.47074 * 330.00440 * 1 2 3
34 34 H 1.08002 * 119.85250 * 359.97438 * 3 2 1
35 35 H 1.08002 * 119.92501 * 179.97438 * 4 3 2
36 36 H 1.08008 * 120.07287 * 180.02562 * 5 4 3
37 37 H 0.96999 * 120.00289 * 359.97438 * 9 7 6
38 38 H 1.09005 * 109.46669 * 299.99728 * 12 10 9
39 39 H 1.08994 * 109.47555 * 59.99907 * 12 10 9
40 40 H 1.08996 * 109.46947 * 180.02562 * 12 10 9
41 41 H 1.08998 * 109.47519 * 300.00339 * 15 13 10
42 42 H 1.09003 * 109.47093 * 59.99710 * 15 13 10
43 43 H 1.09002 * 109.47622 * 179.97438 * 15 13 10
44 44 H 1.00891 * 111.00513 * 31.04384 * 16 13 10
45 45 H 1.09000 * 109.47082 * 299.99377 * 17 16 13
46 46 H 1.08991 * 109.47443 * 60.00173 * 17 16 13
47 47 H 0.96995 * 119.99482 * 0.02562 * 20 18 17
48 48 H 0.97001 * 119.99768 * 179.97438 * 24 23 21
49 49 H 1.08998 * 109.47363 * 263.68916 * 30 29 2
50 50 H 1.09001 * 109.47429 * 23.68984 * 30 29 2
51 51 H 1.09000 * 109.47548 * 143.69081 * 30 29 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1974 1.1994 0.0000
4 6 3.5807 1.2082 0.0005
5 6 4.2812 0.0195 0.0005
6 6 3.5912 -1.1935 0.0005
7 6 4.3354 -2.4711 0.0000
8 8 3.7370 -3.5230 0.1135
9 7 5.6772 -2.4692 -0.1264
10 6 6.4145 -3.7352 -0.1276
11 1 5.9293 -4.4388 0.5490
12 6 6.4287 -4.3159 -1.5430
13 6 7.8512 -3.4889 0.3371
14 1 8.3364 -2.7854 -0.3395
15 6 7.8371 -2.9082 1.7525
16 7 8.5904 -4.7584 0.3366
17 6 10.0336 -4.5272 0.1883
18 6 10.7571 -5.8492 0.1928
19 8 10.1321 -6.8822 0.3086
20 7 12.0987 -5.8836 0.0681
21 6 12.7568 -7.0862 0.0716
22 1 12.2002 -8.0062 0.1738
23 6 14.1400 -7.1216 -0.0565
24 7 14.8172 -6.0023 -0.1804
25 14 15.0369 -8.7603 -0.0510
26 1 14.5506 -9.5944 -1.1793
27 1 16.4957 -8.5266 -0.2003
28 1 14.7771 -9.4624 1.2315
29 6 2.1953 -1.1954 -0.0052
30 6 1.4419 -2.5005 -0.0115
31 1 -0.3633 -0.0001 -1.0277
32 1 -0.3633 -0.8899 0.5139
33 1 -0.3633 0.8900 0.5137
34 1 1.6538 2.1326 -0.0004
35 1 4.1135 2.1476 0.0001
36 1 5.3613 0.0277 0.0014
37 1 6.1546 -1.6298 -0.2174
38 1 5.4051 -4.4914 -1.8739
39 1 6.9138 -3.6124 -2.2195
40 1 6.9769 -5.2580 -1.5436
41 1 7.2885 -1.9663 1.7534
42 1 7.3520 -3.6117 2.4291
43 1 8.8607 -2.7331 2.0838
44 1 8.2474 -5.3763 -0.3834
45 1 10.2241 -4.0115 -0.7529
46 1 10.3905 -3.9154 1.0166
47 1 12.5984 -5.0575 -0.0242
48 1 15.7828 -6.0271 -0.2694
49 1 1.3576 -2.8763 1.0082
50 1 0.4453 -2.3428 -0.4240
51 1 1.9776 -3.2264 -0.6231
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001505741867.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:20:01
Heat of formation + Delta-G solvation = -75.098000 kcal
Electronic energy + Delta-G solvation = -29803.669519 eV
Core-core repulsion = 25701.566245 eV
Total energy + Delta-G solvation = -4102.103274 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.77 seconds
Orbital eigenvalues (eV)
-41.58893 -40.31244 -39.74822 -38.38113 -36.07676 -35.53267 -34.28732 -33.29402
-33.16584 -31.73786 -30.82574 -28.60159 -27.97196 -27.36097 -25.92199 -25.19778
-23.70113 -21.99132 -21.39006 -21.22524 -21.05314 -19.92594 -18.67734 -17.74017
-17.56187 -17.00374 -16.57764 -16.48399 -16.35449 -16.28050 -15.93080 -15.63013
-15.40889 -15.10349 -14.84822 -14.62236 -14.35205 -14.15990 -14.10077 -13.90270
-13.62940 -13.53647 -13.47637 -13.32955 -13.16391 -12.94878 -12.87693 -12.73222
-12.63657 -12.60749 -12.49391 -12.42797 -12.33047 -12.12123 -11.80081 -11.62691
-11.50076 -10.66950 -10.34159 -10.24403 -10.01252 -9.75907 -9.51838 -9.36200
-8.46357 -5.94922 -0.11213 0.39099 1.39959 1.42057 1.52726 1.86235
1.99223 2.05870 2.30369 2.83926 2.97017 3.20976 3.49741 3.53502
3.71427 3.82581 3.91740 3.94497 4.10033 4.15258 4.27925 4.30693
4.38656 4.40792 4.46063 4.54890 4.59516 4.66503 4.69876 4.73016
4.78071 4.83581 4.84258 4.89886 4.95062 4.97976 4.99223 5.16908
5.19856 5.28829 5.37368 5.38249 5.41321 5.45689 5.51147 5.66708
5.89430 5.99446 6.10163 6.36600 6.51061 6.60727 7.13034 7.20031
7.56586 8.12367 8.70628
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.031982 B = 0.001643 C = 0.001592
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 875.293472 B =17036.634905 C =17580.387206
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.107 4.107
3 C -0.092 4.092
4 C -0.130 4.130
5 C -0.089 4.089
6 C -0.156 4.156
7 C 0.554 3.446
8 O -0.567 6.567
9 N -0.702 5.702
10 C 0.151 3.849
11 H 0.071 0.929
12 C -0.164 4.164
13 C 0.084 3.916
14 H 0.073 0.927
15 C -0.137 4.137
16 N -0.679 5.679
17 C 0.067 3.933
18 C 0.436 3.564
19 O -0.625 6.625
20 N -0.571 5.571
21 C -0.336 4.336
22 H 0.078 0.922
23 C -0.011 4.011
24 N -0.918 5.918
25 Si 0.992 3.008
26 H -0.272 1.272
27 H -0.269 1.269
28 H -0.274 1.274
29 C -0.047 4.047
30 C -0.118 4.118
31 H 0.079 0.921
32 H 0.068 0.932
33 H 0.083 0.917
34 H 0.152 0.848
35 H 0.157 0.843
36 H 0.148 0.852
37 H 0.412 0.588
38 H 0.053 0.947
39 H 0.073 0.927
40 H 0.063 0.937
41 H 0.078 0.922
42 H 0.043 0.957
43 H 0.059 0.941
44 H 0.346 0.654
45 H 0.072 0.928
46 H 0.106 0.894
47 H 0.397 0.603
48 H 0.278 0.722
49 H 0.063 0.937
50 H 0.077 0.923
51 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.824 22.494 -1.809 32.815
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.107 4.107
3 C -0.110 4.110
4 C -0.148 4.148
5 C -0.107 4.107
6 C -0.159 4.159
7 C 0.344 3.656
8 O -0.447 6.447
9 N -0.355 5.355
10 C 0.045 3.955
11 H 0.089 0.911
12 C -0.223 4.223
13 C -0.026 4.026
14 H 0.090 0.910
15 C -0.195 4.195
16 N -0.315 5.315
17 C -0.065 4.065
18 C 0.224 3.776
19 O -0.511 6.511
20 N -0.209 5.209
21 C -0.466 4.466
22 H 0.096 0.904
23 C -0.211 4.211
24 N -0.559 5.559
25 Si 0.816 3.184
26 H -0.197 1.197
27 H -0.194 1.194
28 H -0.199 1.199
29 C -0.048 4.048
30 C -0.174 4.174
31 H 0.097 0.903
32 H 0.087 0.913
33 H 0.102 0.898
34 H 0.170 0.830
35 H 0.174 0.826
36 H 0.165 0.835
37 H 0.251 0.749
38 H 0.072 0.928
39 H 0.092 0.908
40 H 0.082 0.918
41 H 0.097 0.903
42 H 0.062 0.938
43 H 0.078 0.922
44 H 0.168 0.832
45 H 0.090 0.910
46 H 0.124 0.876
47 H 0.231 0.769
48 H 0.087 0.913
49 H 0.081 0.919
50 H 0.096 0.904
51 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -24.393 21.046 -0.995 32.232
hybrid contribution 1.253 -0.284 -0.903 1.571
sum -23.140 20.761 -1.899 31.146
Atomic orbital electron populations
1.20884 0.89383 1.03775 1.03214 1.20072 0.97603 0.92050 1.00989
1.21627 0.94781 0.98123 0.96444 1.21444 0.94444 0.98723 1.00196
1.21549 1.00915 0.91178 0.97084 1.19788 0.93931 0.92906 1.09309
1.18629 0.82275 0.89105 0.75605 1.90733 1.68443 1.34522 1.51030
1.45722 1.06111 1.09769 1.73926 1.20820 0.91483 0.85982 0.97190
0.91087 1.22192 1.02270 1.01485 0.96346 1.21760 0.91621 0.90840
0.98367 0.90959 1.21808 1.02254 1.00417 0.95058 1.60161 1.01727
1.13710 1.55916 1.21580 0.88603 0.93520 1.02803 1.20904 0.82599
0.91910 0.82224 1.90501 1.67302 1.37008 1.56314 1.41900 1.05663
1.08977 1.64327 1.19631 0.90534 0.86957 1.49470 0.90438 1.26007
0.96661 1.02207 0.96205 1.69658 1.08839 1.27846 1.49559 0.85008
0.77159 0.77419 0.78860 1.19749 1.19377 1.19891 1.20055 0.92353
0.96261 0.96143 1.21002 0.99694 0.94103 1.02571 0.90264 0.91304
0.89767 0.83020 0.82568 0.83455 0.74931 0.92761 0.90778 0.91828
0.90329 0.93813 0.92206 0.83222 0.91029 0.87626 0.76888 0.91278
0.91852 0.90446 0.91106
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.06 9.18 71.24 0.65 -0.41 16
2 C -0.11 -1.49 5.87 -19.90 -0.12 -1.61 16
3 C -0.09 -0.94 9.69 22.33 0.22 -0.73 16
4 C -0.13 -1.26 10.03 22.23 0.22 -1.03 16
5 C -0.09 -1.11 9.52 22.52 0.21 -0.89 16
6 C -0.16 -2.97 5.87 -20.09 -0.12 -3.09 16
7 C 0.55 12.88 7.67 86.79 0.67 13.55 16
8 O -0.57 -17.41 13.01 -3.90 -0.05 -17.46 16
9 N -0.70 -12.84 4.33 -445.40 -1.93 -14.77 16
10 C 0.15 3.43 2.29 44.99 0.10 3.53 16
11 H 0.07 2.08 7.58 -2.39 -0.02 2.06 16
12 C -0.16 -3.73 9.25 71.98 0.67 -3.07 16
13 C 0.08 1.86 2.28 44.91 0.10 1.96 16
14 H 0.07 1.28 7.80 -2.39 -0.02 1.26 16
15 C -0.14 -2.87 9.26 71.98 0.67 -2.20 16
16 N -0.68 -21.19 5.93 -495.58 -2.94 -24.13 16
17 C 0.07 2.23 5.97 85.56 0.51 2.74 16
18 C 0.44 20.71 7.82 87.66 0.69 21.40 16
19 O -0.62 -35.03 15.78 -3.07 -0.05 -35.08 16
20 N -0.57 -29.19 5.29 -306.97 -1.62 -30.81 16
21 C -0.34 -19.18 9.68 84.04 0.81 -18.36 16
22 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16
23 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16
24 N -0.92 -49.20 13.05 21.66 0.28 -48.91 16
25 Si 0.99 43.04 29.55 68.60 2.03 45.06 16
26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16
27 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16
28 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16
29 C -0.05 -0.90 5.91 -19.61 -0.12 -1.01 16
30 C -0.12 -2.39 8.08 71.24 0.58 -1.81 16
31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16
32 H 0.07 0.67 6.58 -2.39 -0.02 0.66 16
33 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16
34 H 0.15 0.71 8.06 -2.91 -0.02 0.69 16
35 H 0.16 0.61 8.06 -2.91 -0.02 0.58 16
36 H 0.15 1.03 6.45 -2.91 -0.02 1.01 16
37 H 0.41 4.85 6.46 -92.71 -0.60 4.25 16
38 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16
39 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16
40 H 0.06 1.59 6.21 -2.39 -0.01 1.57 16
41 H 0.08 1.20 7.45 -2.39 -0.02 1.18 16
42 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16
43 H 0.06 1.25 7.45 -2.39 -0.02 1.24 16
44 H 0.35 11.52 5.87 -89.70 -0.53 11.00 16
45 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16
46 H 0.11 3.14 7.43 -2.39 -0.02 3.12 16
47 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16
48 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16
49 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16
50 H 0.08 1.19 6.35 -2.39 -0.02 1.18 16
51 H 0.07 1.80 5.86 -2.39 -0.01 1.78 16
Total: -1.00 -74.62 409.98 1.05 -73.57
By element:
Atomic # 1 Polarization: 44.57 SS G_CDS: -0.88 Total: 43.69 kcal
Atomic # 6 Polarization: 2.64 SS G_CDS: 6.21 Total: 8.85 kcal
Atomic # 7 Polarization: -112.42 SS G_CDS: -6.21 Total: -118.63 kcal
Atomic # 8 Polarization: -52.44 SS G_CDS: -0.10 Total: -52.54 kcal
Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal
Total: -74.62 1.05 -73.57 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001505741867.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.528 kcal
(2) G-P(sol) polarization free energy of solvation -74.621 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.150 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.570 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.098 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.77 seconds