Wall clock time and date at job start Wed Apr 1 2020 04:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38387 * 119.92644 * 2 1 4 4 C 1.38335 * 120.29282 * 179.97438 * 3 2 1 5 5 C 1.37979 * 120.14567 * 0.02562 * 4 3 2 6 6 C 1.39559 * 119.85446 * 359.97438 * 5 4 3 7 7 C 1.47842 * 120.14851 * 179.97438 * 6 5 4 8 8 O 1.21553 * 120.00269 * 173.80594 * 7 6 5 9 9 N 1.34776 * 119.99663 * 353.79730 * 7 6 5 10 10 C 1.46503 * 120.00085 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46736 * 35.00571 * 10 9 7 12 12 C 1.53002 * 109.47280 * 275.00847 * 10 9 7 13 13 C 1.52992 * 109.47393 * 155.00250 * 10 9 7 14 14 H 1.09003 * 109.47354 * 295.00336 * 13 10 9 15 15 C 1.53005 * 109.47243 * 55.00093 * 13 10 9 16 16 N 1.46895 * 109.47425 * 175.00306 * 13 10 9 17 17 C 1.46900 * 111.00371 * 155.00254 * 16 13 10 18 18 C 1.50699 * 109.47390 * 180.02562 * 17 16 13 19 19 O 1.21288 * 119.99812 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99940 * 179.97438 * 18 17 16 21 21 C 1.37094 * 119.99863 * 180.02562 * 20 18 17 22 22 H 1.08006 * 120.00043 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00151 * 179.97438 * 21 20 18 24 24 N 1.31405 * 119.99561 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99912 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47218 * 60.00459 * 25 23 21 27 27 H 1.48501 * 109.46903 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47504 * 299.99862 * 25 23 21 29 29 C 1.37939 * 119.93044 * 180.25695 * 2 1 3 30 30 C 1.50697 * 120.07218 * 0.02562 * 29 2 1 31 31 H 1.09005 * 109.47580 * 89.99864 * 1 2 3 32 32 H 1.09001 * 109.47436 * 210.00119 * 1 2 3 33 33 H 1.09001 * 109.47471 * 329.99627 * 1 2 3 34 34 H 1.08000 * 119.85235 * 359.97438 * 3 2 1 35 35 H 1.08002 * 119.92989 * 179.97438 * 4 3 2 36 36 H 1.08005 * 120.07754 * 179.97438 * 5 4 3 37 37 H 0.97003 * 120.00396 * 0.02562 * 9 7 6 38 38 H 1.08998 * 109.46527 * 299.99633 * 12 10 9 39 39 H 1.09000 * 109.47329 * 59.99620 * 12 10 9 40 40 H 1.09002 * 109.46884 * 179.97438 * 12 10 9 41 41 H 1.09003 * 109.46746 * 59.99871 * 15 13 10 42 42 H 1.09000 * 109.47456 * 180.02562 * 15 13 10 43 43 H 1.09004 * 109.47027 * 300.00702 * 15 13 10 44 44 H 1.00901 * 110.99871 * 31.04416 * 16 13 10 45 45 H 1.09000 * 109.47082 * 300.00404 * 17 16 13 46 46 H 1.08998 * 109.47184 * 59.99536 * 17 16 13 47 47 H 0.96996 * 120.00112 * 359.97438 * 20 18 17 48 48 H 0.97003 * 119.99928 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.47131 * 263.68955 * 30 29 2 50 50 H 1.09007 * 109.47389 * 23.69189 * 30 29 2 51 51 H 1.09002 * 109.47308 * 143.68922 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5806 1.2082 0.0005 5 6 4.2812 0.0195 0.0005 6 6 3.5911 -1.1936 0.0005 7 6 4.3352 -2.4711 0.0000 8 8 3.7369 -3.5230 0.1136 9 7 5.6770 -2.4693 -0.1267 10 6 6.4145 -3.7352 -0.1267 11 1 5.8190 -4.5025 -0.6214 12 6 6.6978 -4.1604 1.3155 13 6 7.7370 -3.5550 -0.8744 14 1 7.5348 -3.3390 -1.9236 15 6 8.5184 -2.3938 -0.2562 16 7 8.5293 -4.7877 -0.7722 17 6 9.4688 -4.9045 -1.8955 18 6 10.2616 -6.1785 -1.7569 19 8 10.0632 -6.9169 -0.8154 20 7 11.1904 -6.4980 -2.6799 21 6 11.9113 -7.6573 -2.5541 22 1 11.7353 -8.3144 -1.7152 23 6 12.8685 -7.9869 -3.5059 24 7 13.0831 -7.1872 -4.5262 25 14 13.8513 -9.5662 -3.3341 26 1 12.9262 -10.7278 -3.3385 27 1 14.7996 -9.6851 -4.4706 28 1 14.6088 -9.5414 -2.0571 29 6 2.1952 -1.1954 -0.0054 30 6 1.4417 -2.5005 -0.0118 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.6537 2.1326 -0.0004 35 1 4.1135 2.1476 0.0001 36 1 5.3612 0.0277 0.0005 37 1 6.1546 -1.6298 -0.2171 38 1 7.2932 -3.3931 1.8101 39 1 5.7556 -4.2889 1.8482 40 1 7.2461 -5.1025 1.3154 41 1 8.7206 -2.6097 0.7929 42 1 9.4604 -2.2651 -0.7893 43 1 7.9304 -1.4790 -0.3321 44 1 7.9311 -5.5983 -0.7153 45 1 8.9134 -4.9227 -2.8332 46 1 10.1474 -4.0515 -1.8917 47 1 11.3483 -5.9080 -3.4334 48 1 13.7510 -7.4174 -5.1909 49 1 1.3575 -2.8764 1.0079 50 1 0.4452 -2.3428 -0.4244 51 1 1.9775 -3.2263 -0.6236 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505741869.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:15 Heat of formation + Delta-G solvation = -50.912323 kcal Electronic energy + Delta-G solvation = -29807.496712 eV Core-core repulsion = 25706.442208 eV Total energy + Delta-G solvation = -4101.054504 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -40.82953 -39.23908 -38.35310 -37.26739 -34.72098 -33.94153 -33.53411 -32.53297 -31.28882 -30.82619 -29.18714 -27.91731 -26.82140 -26.56958 -24.81478 -24.14160 -23.00794 -21.30280 -20.54464 -19.76854 -19.31405 -18.02156 -17.77898 -16.59910 -16.26222 -15.91527 -15.81014 -15.47557 -15.30599 -15.14648 -14.69950 -14.43574 -14.23126 -13.96332 -13.73954 -13.63933 -13.39532 -13.18028 -13.04183 -12.85919 -12.76833 -12.47239 -12.31484 -12.20431 -12.10909 -12.05330 -11.97420 -11.80889 -11.57894 -11.42134 -11.26701 -11.06785 -10.89663 -10.69222 -10.43816 -10.20966 -9.80865 -9.49683 -9.37855 -9.10975 -8.94131 -8.46647 -8.11844 -7.95976 -6.41402 -3.82195 0.51392 0.94328 2.61035 2.88140 3.20736 3.26326 3.30928 3.47159 3.90972 4.09514 4.30035 4.32403 4.35803 4.45348 4.58326 4.61524 4.81863 4.84797 4.87399 5.12716 5.14479 5.17575 5.20952 5.25257 5.26914 5.40537 5.42013 5.53075 5.56420 5.57789 5.59431 5.67096 5.74460 5.78512 5.89627 5.92875 5.94287 5.95945 5.99342 6.05255 6.16255 6.27086 6.28602 6.39453 6.44694 6.53417 7.15160 7.30283 7.55394 7.59959 8.01969 8.06289 8.61434 9.18095 9.54404 10.05859 10.76240 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026872 B = 0.001654 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.732456 B =16927.918806 C =17219.592468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.099 4.099 3 C -0.093 4.093 4 C -0.131 4.131 5 C -0.088 4.088 6 C -0.135 4.135 7 C 0.557 3.443 8 O -0.529 6.529 9 N -0.719 5.719 10 C 0.142 3.858 11 H 0.088 0.912 12 C -0.157 4.157 13 C 0.076 3.924 14 H 0.047 0.953 15 C -0.144 4.144 16 N -0.656 5.656 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 C -0.023 4.023 30 C -0.124 4.124 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.398 0.602 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.352 0.648 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.075 0.925 50 H 0.060 0.940 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.725 20.648 6.584 30.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.099 4.099 3 C -0.111 4.111 4 C -0.149 4.149 5 C -0.107 4.107 6 C -0.138 4.138 7 C 0.345 3.655 8 O -0.407 6.407 9 N -0.372 5.372 10 C 0.038 3.962 11 H 0.106 0.894 12 C -0.215 4.215 13 C -0.035 4.035 14 H 0.065 0.935 15 C -0.202 4.202 16 N -0.290 5.290 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.024 4.024 30 C -0.180 4.180 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.235 0.765 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.172 0.828 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.078 0.922 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.658 19.612 7.552 30.178 hybrid contribution 0.501 0.029 -1.306 1.399 sum -21.157 19.641 6.246 29.536 Atomic orbital electron populations 1.20838 0.90751 1.03096 1.02573 1.19796 0.96428 0.92308 1.01395 1.21233 0.94323 0.97580 0.97948 1.21052 0.94261 0.97997 1.01616 1.21276 0.99679 0.91824 0.97904 1.19803 0.93760 0.93025 1.07247 1.18257 0.81994 0.88793 0.76439 1.90738 1.67792 1.32948 1.49232 1.46110 1.06540 1.10048 1.74528 1.21094 0.91580 0.85734 0.97825 0.89397 1.22123 1.01533 1.03031 0.94828 1.21718 0.91435 0.92609 0.97711 0.93472 1.21888 1.00080 0.95562 1.02668 1.60187 1.20781 1.03801 1.44225 1.21734 0.95877 0.98741 0.91852 1.19776 0.84290 0.88140 0.85169 1.90526 1.69771 1.52997 1.33338 1.41848 1.33167 1.21839 1.23146 1.19662 1.15108 0.98633 1.09565 0.87952 1.25258 0.97906 0.99381 0.95364 1.69603 1.34725 1.37565 1.12445 0.85912 0.79180 0.81362 0.77729 1.19923 1.20994 1.19881 1.19917 0.92024 0.95782 0.94630 1.21136 0.98987 0.94181 1.03723 0.90986 0.90932 0.91432 0.85648 0.85394 0.85731 0.76493 0.92182 0.92804 0.89939 0.91085 0.91966 0.93428 0.82791 0.93824 0.89544 0.77483 0.91837 0.90620 0.92158 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 9.18 36.00 0.33 -0.31 16 2 C -0.10 -0.78 5.87 -104.68 -0.61 -1.39 16 3 C -0.09 -0.62 9.69 -39.49 -0.38 -1.01 16 4 C -0.13 -0.87 10.03 -39.64 -0.40 -1.27 16 5 C -0.09 -0.68 9.53 -39.18 -0.37 -1.05 16 6 C -0.14 -1.35 5.87 -104.97 -0.62 -1.97 16 7 C 0.56 6.52 7.66 -12.33 -0.09 6.43 16 8 O -0.53 -7.68 13.02 5.32 0.07 -7.61 16 9 N -0.72 -7.14 4.94 -54.75 -0.27 -7.41 16 10 C 0.14 1.64 2.30 -67.93 -0.16 1.48 16 11 H 0.09 1.16 7.58 -51.93 -0.39 0.76 16 12 C -0.16 -1.89 9.02 37.16 0.34 -1.55 16 13 C 0.08 0.89 2.66 -67.72 -0.18 0.71 16 14 H 0.05 0.55 7.80 -51.93 -0.40 0.14 16 15 C -0.14 -1.47 8.93 37.16 0.33 -1.14 16 16 N -0.66 -10.13 5.14 -108.00 -0.55 -10.69 16 17 C 0.05 0.87 5.97 -4.98 -0.03 0.84 16 18 C 0.44 10.32 7.82 -10.98 -0.09 10.24 16 19 O -0.58 -15.70 15.78 5.55 0.09 -15.62 16 20 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 21 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 25 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 C -0.02 -0.22 5.91 -104.23 -0.62 -0.84 16 30 C -0.12 -1.20 8.08 36.00 0.29 -0.90 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.39 6.58 -51.93 -0.34 0.05 16 33 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 34 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 35 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.12 0.69 6.45 -52.48 -0.34 0.35 16 37 H 0.40 3.04 4.65 -40.82 -0.19 2.85 16 38 H 0.06 0.67 6.56 -51.93 -0.34 0.33 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.10 7.17 -51.93 -0.37 0.73 16 41 H 0.07 0.78 6.57 -51.93 -0.34 0.44 16 42 H 0.06 0.67 7.45 -51.93 -0.39 0.29 16 43 H 0.05 0.35 6.29 -51.93 -0.33 0.03 16 44 H 0.35 5.75 7.61 -39.29 -0.30 5.45 16 45 H 0.04 0.69 8.06 -51.93 -0.42 0.27 16 46 H 0.09 1.37 7.44 -51.93 -0.39 0.98 16 47 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.06 0.45 6.35 -51.92 -0.33 0.12 16 51 H 0.10 1.13 5.86 -51.93 -0.30 0.82 16 LS Contribution 406.20 15.07 6.12 6.12 Total: -1.00 -32.77 406.20 -8.95 -41.71 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -7.54 Total: 15.24 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -2.50 Total: 0.26 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.16 Total: -56.19 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.16 Total: -23.23 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.77 -8.95 -41.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505741869.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.198 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds