Wall clock time and date at job start Wed Apr 1 2020 04:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38387 * 119.92644 * 2 1 4 4 C 1.38335 * 120.29282 * 179.97438 * 3 2 1 5 5 C 1.37979 * 120.14567 * 0.02562 * 4 3 2 6 6 C 1.39559 * 119.85446 * 359.97438 * 5 4 3 7 7 C 1.47842 * 120.14851 * 179.97438 * 6 5 4 8 8 O 1.21553 * 120.00269 * 173.80594 * 7 6 5 9 9 N 1.34776 * 119.99663 * 353.79730 * 7 6 5 10 10 C 1.46503 * 120.00085 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46736 * 35.00571 * 10 9 7 12 12 C 1.53002 * 109.47280 * 275.00847 * 10 9 7 13 13 C 1.52992 * 109.47393 * 155.00250 * 10 9 7 14 14 H 1.09003 * 109.47354 * 295.00336 * 13 10 9 15 15 C 1.53005 * 109.47243 * 55.00093 * 13 10 9 16 16 N 1.46895 * 109.47425 * 175.00306 * 13 10 9 17 17 C 1.46900 * 111.00371 * 155.00254 * 16 13 10 18 18 C 1.50699 * 109.47390 * 180.02562 * 17 16 13 19 19 O 1.21288 * 119.99812 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99940 * 179.97438 * 18 17 16 21 21 C 1.37094 * 119.99863 * 180.02562 * 20 18 17 22 22 H 1.08006 * 120.00043 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00151 * 179.97438 * 21 20 18 24 24 N 1.31405 * 119.99561 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99912 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47218 * 60.00459 * 25 23 21 27 27 H 1.48501 * 109.46903 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47504 * 299.99862 * 25 23 21 29 29 C 1.37939 * 119.93044 * 180.25695 * 2 1 3 30 30 C 1.50697 * 120.07218 * 0.02562 * 29 2 1 31 31 H 1.09005 * 109.47580 * 89.99864 * 1 2 3 32 32 H 1.09001 * 109.47436 * 210.00119 * 1 2 3 33 33 H 1.09001 * 109.47471 * 329.99627 * 1 2 3 34 34 H 1.08000 * 119.85235 * 359.97438 * 3 2 1 35 35 H 1.08002 * 119.92989 * 179.97438 * 4 3 2 36 36 H 1.08005 * 120.07754 * 179.97438 * 5 4 3 37 37 H 0.97003 * 120.00396 * 0.02562 * 9 7 6 38 38 H 1.08998 * 109.46527 * 299.99633 * 12 10 9 39 39 H 1.09000 * 109.47329 * 59.99620 * 12 10 9 40 40 H 1.09002 * 109.46884 * 179.97438 * 12 10 9 41 41 H 1.09003 * 109.46746 * 59.99871 * 15 13 10 42 42 H 1.09000 * 109.47456 * 180.02562 * 15 13 10 43 43 H 1.09004 * 109.47027 * 300.00702 * 15 13 10 44 44 H 1.00901 * 110.99871 * 31.04416 * 16 13 10 45 45 H 1.09000 * 109.47082 * 300.00404 * 17 16 13 46 46 H 1.08998 * 109.47184 * 59.99536 * 17 16 13 47 47 H 0.96996 * 120.00112 * 359.97438 * 20 18 17 48 48 H 0.97003 * 119.99928 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.47131 * 263.68955 * 30 29 2 50 50 H 1.09007 * 109.47389 * 23.69189 * 30 29 2 51 51 H 1.09002 * 109.47308 * 143.68922 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5806 1.2082 0.0005 5 6 4.2812 0.0195 0.0005 6 6 3.5911 -1.1936 0.0005 7 6 4.3352 -2.4711 0.0000 8 8 3.7369 -3.5230 0.1136 9 7 5.6770 -2.4693 -0.1267 10 6 6.4145 -3.7352 -0.1267 11 1 5.8190 -4.5025 -0.6214 12 6 6.6978 -4.1604 1.3155 13 6 7.7370 -3.5550 -0.8744 14 1 7.5348 -3.3390 -1.9236 15 6 8.5184 -2.3938 -0.2562 16 7 8.5293 -4.7877 -0.7722 17 6 9.4688 -4.9045 -1.8955 18 6 10.2616 -6.1785 -1.7569 19 8 10.0632 -6.9169 -0.8154 20 7 11.1904 -6.4980 -2.6799 21 6 11.9113 -7.6573 -2.5541 22 1 11.7353 -8.3144 -1.7152 23 6 12.8685 -7.9869 -3.5059 24 7 13.0831 -7.1872 -4.5262 25 14 13.8513 -9.5662 -3.3341 26 1 12.9262 -10.7278 -3.3385 27 1 14.7996 -9.6851 -4.4706 28 1 14.6088 -9.5414 -2.0571 29 6 2.1952 -1.1954 -0.0054 30 6 1.4417 -2.5005 -0.0118 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.6537 2.1326 -0.0004 35 1 4.1135 2.1476 0.0001 36 1 5.3612 0.0277 0.0005 37 1 6.1546 -1.6298 -0.2171 38 1 7.2932 -3.3931 1.8101 39 1 5.7556 -4.2889 1.8482 40 1 7.2461 -5.1025 1.3154 41 1 8.7206 -2.6097 0.7929 42 1 9.4604 -2.2651 -0.7893 43 1 7.9304 -1.4790 -0.3321 44 1 7.9311 -5.5983 -0.7153 45 1 8.9134 -4.9227 -2.8332 46 1 10.1474 -4.0515 -1.8917 47 1 11.3483 -5.9080 -3.4334 48 1 13.7510 -7.4174 -5.1909 49 1 1.3575 -2.8764 1.0079 50 1 0.4452 -2.3428 -0.4244 51 1 1.9775 -3.2263 -0.6236 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505741869.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:12 Heat of formation + Delta-G solvation = -73.166280 kcal Electronic energy + Delta-G solvation = -29808.461716 eV Core-core repulsion = 25706.442208 eV Total energy + Delta-G solvation = -4102.019508 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.61058 -40.31102 -39.77109 -38.42608 -36.08980 -35.52838 -34.30840 -33.29956 -33.17663 -31.89376 -30.13374 -28.57782 -28.11411 -27.36795 -26.17217 -25.36186 -23.95413 -21.90849 -21.35931 -21.12388 -20.71119 -19.92913 -18.73413 -17.73652 -17.40194 -16.88340 -16.75678 -16.51360 -16.46971 -16.22550 -15.97018 -15.65628 -15.63457 -15.19368 -14.84184 -14.56862 -14.27737 -14.25330 -13.92280 -13.76425 -13.54454 -13.52970 -13.42266 -13.32597 -13.13029 -13.08249 -12.93242 -12.82580 -12.70364 -12.54757 -12.50281 -12.42598 -12.12387 -11.92768 -11.80358 -11.67762 -11.49971 -10.70007 -10.36123 -10.21844 -10.01404 -9.76047 -9.52612 -9.38858 -8.46463 -5.95105 -0.12359 0.38218 1.39938 1.41848 1.52636 1.84528 1.99941 2.05952 2.30137 2.82901 2.95411 3.20815 3.47305 3.59250 3.70688 3.81519 3.90470 3.93308 4.09313 4.17284 4.27260 4.30352 4.38143 4.44846 4.45799 4.57941 4.64001 4.65300 4.71769 4.75632 4.79771 4.82411 4.83892 4.89846 4.96787 4.98138 5.02437 5.18986 5.26097 5.29488 5.38025 5.40929 5.46972 5.49160 5.51137 5.65955 5.87595 5.98734 6.08467 6.31923 6.49374 6.60356 7.12788 7.17914 7.56448 8.11945 8.70613 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026872 B = 0.001654 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.732456 B =16927.918806 C =17219.592468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.107 4.107 3 C -0.091 4.091 4 C -0.130 4.130 5 C -0.090 4.090 6 C -0.157 4.157 7 C 0.553 3.447 8 O -0.567 6.567 9 N -0.705 5.705 10 C 0.150 3.850 11 H 0.067 0.933 12 C -0.149 4.149 13 C 0.082 3.918 14 H 0.058 0.942 15 C -0.143 4.143 16 N -0.667 5.667 17 C 0.066 3.934 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.272 1.272 29 C -0.047 4.047 30 C -0.118 4.118 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.146 0.854 37 H 0.411 0.589 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.343 0.657 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.064 0.936 50 H 0.077 0.923 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.830 23.703 6.138 32.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.107 4.107 3 C -0.109 4.109 4 C -0.147 4.147 5 C -0.108 4.108 6 C -0.160 4.160 7 C 0.342 3.658 8 O -0.448 6.448 9 N -0.359 5.359 10 C 0.045 3.955 11 H 0.085 0.915 12 C -0.207 4.207 13 C -0.028 4.028 14 H 0.076 0.924 15 C -0.201 4.201 16 N -0.301 5.301 17 C -0.066 4.066 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.197 1.197 29 C -0.048 4.048 30 C -0.174 4.174 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.171 0.829 35 H 0.175 0.825 36 H 0.164 0.836 37 H 0.251 0.749 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.162 0.838 45 H 0.082 0.918 46 H 0.126 0.874 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.096 0.904 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.753 22.725 7.089 32.247 hybrid contribution 0.457 -0.839 -1.138 1.486 sum -21.295 21.886 5.952 31.111 Atomic orbital electron populations 1.20885 0.89344 1.03807 1.03221 1.20076 0.97622 0.92034 1.00939 1.21634 0.94759 0.98144 0.96393 1.21449 0.94459 0.98691 1.00142 1.21545 1.00859 0.91239 0.97183 1.19797 0.93976 0.92908 1.09361 1.18670 0.82300 0.89165 0.75663 1.90725 1.68575 1.34467 1.51016 1.45914 1.06082 1.09966 1.73974 1.20851 0.91398 0.86086 0.97140 0.91485 1.22025 1.00826 1.02585 0.95290 1.21757 0.91079 0.91478 0.98500 0.92421 1.21905 1.00277 0.95984 1.01887 1.60224 1.21300 1.04910 1.43635 1.21588 0.96009 0.95645 0.93396 1.20861 0.83487 0.89457 0.83686 1.90497 1.70723 1.54883 1.34778 1.41912 1.33743 1.21484 1.23856 1.19636 1.17060 0.99955 1.09874 0.90357 1.26022 0.98192 1.02273 0.94692 1.69661 1.34989 1.38695 1.12666 0.84996 0.77827 0.77505 0.78050 1.19829 1.19436 1.19726 1.20061 0.92312 0.96305 0.96145 1.21004 0.99694 0.94081 1.02594 0.90284 0.91281 0.89712 0.82940 0.82490 0.83597 0.74870 0.90972 0.93896 0.91654 0.91827 0.92150 0.90132 0.83763 0.91752 0.87388 0.76959 0.91299 0.91764 0.90424 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.18 71.23 0.65 -0.42 16 2 C -0.11 -1.49 5.87 -19.90 -0.12 -1.61 16 3 C -0.09 -0.94 9.69 22.33 0.22 -0.73 16 4 C -0.13 -1.27 10.03 22.23 0.22 -1.05 16 5 C -0.09 -1.16 9.53 22.53 0.21 -0.94 16 6 C -0.16 -3.06 5.87 -20.09 -0.12 -3.17 16 7 C 0.55 13.10 7.66 86.79 0.67 13.77 16 8 O -0.57 -17.51 13.02 -3.88 -0.05 -17.56 16 9 N -0.71 -13.37 4.94 -445.41 -2.20 -15.57 16 10 C 0.15 3.45 2.30 44.99 0.10 3.55 16 11 H 0.07 1.85 7.58 -2.39 -0.02 1.83 16 12 C -0.15 -3.65 9.02 71.98 0.65 -3.00 16 13 C 0.08 1.81 2.66 44.92 0.12 1.93 16 14 H 0.06 1.20 7.80 -2.39 -0.02 1.18 16 15 C -0.14 -2.53 8.93 71.98 0.64 -1.89 16 16 N -0.67 -20.35 5.14 -495.59 -2.55 -22.90 16 17 C 0.07 2.21 5.97 85.56 0.51 2.72 16 18 C 0.44 20.77 7.82 87.66 0.69 21.45 16 19 O -0.62 -34.59 15.78 -3.06 -0.05 -34.64 16 20 N -0.57 -29.39 5.29 -306.98 -1.62 -31.02 16 21 C -0.34 -19.17 9.68 84.04 0.81 -18.36 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -49.58 13.05 21.66 0.28 -49.29 16 25 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 28 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 29 C -0.05 -0.91 5.91 -19.61 -0.12 -1.03 16 30 C -0.12 -2.41 8.08 71.23 0.58 -1.83 16 31 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.07 0.68 6.58 -2.39 -0.02 0.66 16 33 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 34 H 0.15 0.71 8.06 -2.91 -0.02 0.69 16 35 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 36 H 0.15 1.10 6.45 -2.91 -0.02 1.09 16 37 H 0.41 5.27 4.65 -92.71 -0.43 4.84 16 38 H 0.07 1.57 6.56 -2.39 -0.02 1.55 16 39 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.83 7.17 -2.39 -0.02 1.81 16 41 H 0.06 1.25 6.57 -2.39 -0.02 1.24 16 42 H 0.06 1.13 7.45 -2.39 -0.02 1.11 16 43 H 0.08 0.89 6.29 -2.38 -0.02 0.87 16 44 H 0.34 11.49 7.61 -89.69 -0.68 10.81 16 45 H 0.06 1.92 8.06 -2.39 -0.02 1.90 16 46 H 0.11 3.19 7.44 -2.39 -0.02 3.17 16 47 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 48 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 49 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.08 1.21 6.35 -2.38 -0.02 1.19 16 51 H 0.07 1.80 5.86 -2.39 -0.01 1.79 16 Total: -1.00 -73.74 406.20 1.17 -72.56 By element: Atomic # 1 Polarization: 44.88 SS G_CDS: -0.86 Total: 44.02 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 6.19 Total: 9.22 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -6.09 Total: -118.78 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: -0.10 Total: -52.20 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -73.74 1.17 -72.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505741869.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.602 kcal (2) G-P(sol) polarization free energy of solvation -73.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds