Wall clock time and date at job start Wed Apr 1 2020 04:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38380 * 119.85473 * 2 1 4 4 C 1.37939 * 120.14520 * 180.23384 * 3 2 1 5 5 C 1.39597 * 119.84909 * 359.51447 * 4 3 2 6 6 C 1.47846 * 120.13840 * 180.27892 * 5 4 3 7 7 O 1.21561 * 119.99557 * 180.02562 * 6 5 4 8 8 N 1.34771 * 120.00346 * 359.97438 * 6 5 4 9 9 C 1.46504 * 120.00249 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47055 * 175.18900 * 9 8 6 11 11 H 1.08996 * 109.47288 * 295.31561 * 10 9 8 12 12 C 1.53004 * 109.46782 * 175.31794 * 10 9 8 13 13 N 1.46900 * 109.47000 * 55.32018 * 10 9 8 14 14 C 1.46906 * 110.99517 * 192.49142 * 13 10 9 15 15 C 1.46898 * 111.00361 * 68.53939 * 13 10 9 16 16 C 1.50702 * 109.47106 * 189.99965 * 15 13 10 17 17 O 1.21288 * 119.99669 * 359.97438 * 16 15 13 18 18 N 1.34774 * 119.99703 * 179.97438 * 16 15 13 19 19 C 1.37097 * 119.99665 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00426 * 0.02562 * 19 18 16 21 21 C 1.38954 * 120.00111 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99587 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00436 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46775 * 59.99806 * 23 21 19 25 25 H 1.48501 * 109.47348 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46861 * 300.00467 * 23 21 19 27 27 C 1.39554 * 119.71247 * 0.25052 * 5 4 3 28 28 C 1.37974 * 119.85809 * 0.02562 * 27 5 4 29 29 C 1.50692 * 119.93068 * 179.97438 * 28 27 5 30 30 H 1.09007 * 109.47330 * 270.23011 * 1 2 3 31 31 H 1.09001 * 109.47242 * 30.23112 * 1 2 3 32 32 H 1.09001 * 109.47496 * 150.22963 * 1 2 3 33 33 H 1.08001 * 119.92342 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.07009 * 179.78967 * 4 3 2 35 35 H 0.97004 * 119.99643 * 0.02562 * 8 6 5 36 36 H 1.08996 * 109.46935 * 295.19035 * 9 8 6 37 37 H 1.09000 * 109.46851 * 55.18759 * 9 8 6 38 38 H 1.09004 * 109.46822 * 299.99713 * 12 10 9 39 39 H 1.08996 * 109.47641 * 60.00113 * 12 10 9 40 40 H 1.09005 * 109.47052 * 180.02562 * 12 10 9 41 41 H 1.08997 * 109.46968 * 53.76414 * 14 13 10 42 42 H 1.09005 * 109.46502 * 173.75812 * 14 13 10 43 43 H 1.08998 * 109.47354 * 293.76039 * 14 13 10 44 44 H 1.08998 * 109.46839 * 309.99827 * 15 13 10 45 45 H 1.09001 * 109.47350 * 69.99491 * 15 13 10 46 46 H 0.97001 * 120.00153 * 0.02562 * 18 16 15 47 47 H 0.97001 * 120.00085 * 180.02562 * 22 21 19 48 48 H 1.08001 * 120.06778 * 180.02562 * 27 5 4 49 49 H 1.08998 * 109.46801 * 90.00243 * 29 28 27 50 50 H 1.09008 * 109.47345 * 210.00080 * 29 28 27 51 51 H 1.08998 * 109.47441 * 330.00232 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5752 1.2072 -0.0049 5 6 4.2762 -0.0001 0.0005 6 6 5.7546 0.0000 0.0015 7 8 6.3624 -1.0527 0.0057 8 7 6.4285 1.1671 -0.0032 9 6 7.8935 1.1672 -0.0027 10 6 8.4035 2.6041 -0.1296 11 1 8.1106 3.0094 -1.0981 12 6 9.9290 2.6160 -0.0119 13 7 7.8234 3.4259 0.9409 14 6 8.0459 4.8555 0.6864 15 6 8.3573 3.0354 2.2526 16 6 7.5695 3.7199 3.3397 17 8 6.6537 4.4606 3.0502 18 7 7.8826 3.5090 4.6335 19 6 7.1662 4.1322 5.6224 20 1 6.3508 4.7918 5.3648 21 6 7.4894 3.9153 6.9563 22 7 8.4819 3.1131 7.2698 23 14 6.5138 4.7649 8.3039 24 1 5.0872 4.3632 8.2104 25 1 7.0538 4.3704 9.6298 26 1 6.6252 6.2369 8.1425 27 6 3.5753 -1.2068 0.0054 28 6 2.1956 -1.1999 0.0044 29 6 1.4371 -2.5020 0.0092 30 1 -0.3634 0.0041 1.0277 31 1 -0.3634 0.8879 -0.5174 32 1 -0.3634 -0.8920 -0.5103 33 1 1.6522 2.1334 0.0004 34 1 4.1116 2.1445 -0.0083 35 1 5.9434 2.0072 -0.0069 36 1 8.2565 0.7337 0.9291 37 1 8.2571 0.5769 -0.8439 38 1 10.2218 2.2107 0.9566 39 1 10.3595 2.0062 -0.8062 40 1 10.2923 3.6398 -0.1019 41 1 7.6775 5.1091 -0.3076 42 1 7.5129 5.4446 1.4327 43 1 9.1123 5.0733 0.7452 44 1 8.2763 1.9548 2.3707 45 1 9.4042 3.3309 2.3214 46 1 8.6153 2.9169 4.8649 47 1 8.7073 2.9613 8.2010 48 1 4.1118 -2.1441 0.0099 49 1 1.2536 -2.8118 1.0380 50 1 0.4855 -2.3701 -0.5059 51 1 2.0236 -3.2660 -0.5012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506049718.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:39 Heat of formation + Delta-G solvation = -47.062446 kcal Electronic energy + Delta-G solvation = -30671.746863 eV Core-core repulsion = 26570.859303 eV Total energy + Delta-G solvation = -4100.887561 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.31349 -39.25945 -38.48828 -37.18677 -34.41294 -33.87672 -33.43492 -32.24300 -31.24645 -30.92401 -28.16413 -27.98379 -27.27940 -25.90503 -24.88925 -23.84653 -22.37119 -21.98644 -20.45972 -19.72839 -18.90634 -17.84436 -17.52265 -16.64402 -16.39909 -15.51047 -15.31769 -15.29121 -14.84121 -14.78698 -14.74718 -14.34257 -14.25935 -13.97852 -13.78134 -13.55660 -13.50917 -13.10472 -13.00625 -12.82008 -12.69309 -12.68140 -12.27723 -12.16921 -12.06740 -11.85946 -11.71981 -11.48003 -11.45185 -11.24292 -11.15072 -11.06137 -10.87878 -10.76694 -10.44190 -10.21089 -9.84574 -9.46533 -9.00988 -8.88148 -8.64624 -8.47981 -7.98608 -7.87363 -6.41065 -3.81959 0.80829 1.28248 2.89015 3.19818 3.25272 3.25886 3.29914 3.82272 3.90418 3.97556 4.23742 4.58527 4.62475 4.69926 4.75471 4.87580 4.95053 4.99786 5.09943 5.15456 5.21413 5.26961 5.29529 5.36449 5.46959 5.47629 5.49603 5.56869 5.60627 5.62487 5.64908 5.76220 5.79207 5.87203 5.92795 5.93919 5.97739 6.01768 6.13958 6.25255 6.27916 6.31192 6.46161 6.49396 6.56409 6.82767 7.20643 7.31545 7.55240 7.68144 8.06323 8.33611 8.62025 9.18362 9.55002 10.06527 10.76635 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007830 B = 0.003052 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3575.067031 B = 9170.821884 C =11361.093937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.124 4.124 4 C -0.081 4.081 5 C -0.134 4.134 6 C 0.557 3.443 7 O -0.549 6.549 8 N -0.708 5.708 9 C 0.129 3.871 10 C 0.064 3.936 11 H 0.089 0.911 12 C -0.185 4.185 13 N -0.513 5.513 14 C 0.021 3.979 15 C 0.041 3.959 16 C 0.445 3.555 17 O -0.579 6.579 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.058 4.058 28 C -0.101 4.101 29 C -0.116 4.116 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.411 0.589 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.098 0.902 43 H 0.018 0.982 44 H 0.087 0.913 45 H 0.052 0.948 46 H 0.391 0.609 47 H 0.272 0.728 48 H 0.134 0.866 49 H 0.071 0.929 50 H 0.070 0.930 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.490 -6.077 -17.597 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.066 4.066 3 C -0.142 4.142 4 C -0.100 4.100 5 C -0.137 4.137 6 C 0.344 3.656 7 O -0.429 6.429 8 N -0.360 5.360 9 C 0.005 3.995 10 C -0.046 4.046 11 H 0.107 0.893 12 C -0.244 4.244 13 N -0.236 5.236 14 C -0.127 4.127 15 C -0.090 4.090 16 C 0.230 3.770 17 O -0.464 6.464 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.077 4.077 28 C -0.101 4.101 29 C -0.172 4.172 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.248 0.752 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.116 0.884 43 H 0.036 0.964 44 H 0.105 0.895 45 H 0.069 0.931 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.152 0.848 49 H 0.090 0.910 50 H 0.089 0.911 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.084 -6.434 -17.582 20.393 hybrid contribution 0.891 0.655 1.029 1.511 sum -7.192 -5.779 -16.553 18.951 Atomic orbital electron populations 1.20922 0.91116 1.02954 1.02702 1.19966 0.96167 0.92647 0.97774 1.20978 0.93925 0.97728 1.01552 1.21374 0.94561 0.97278 0.96747 1.19909 0.92873 0.94384 1.06512 1.18269 0.87147 0.83831 0.76318 1.90742 1.69968 1.31353 1.50800 1.45739 1.07270 1.08864 1.74097 1.21413 0.79981 0.95834 1.02287 1.22056 0.92985 0.93308 0.96208 0.89336 1.22402 0.96408 1.02616 1.02991 1.61796 1.57234 1.04261 1.00324 1.22557 0.98977 0.88500 1.02618 1.21942 0.96852 1.00854 0.89350 1.19712 0.87442 0.86477 0.83360 1.90462 1.32666 1.41022 1.82239 1.41857 1.31601 1.42362 1.04170 1.19630 1.13768 1.24532 0.84945 0.87991 1.25257 0.96985 0.97233 0.98429 1.69604 1.28527 1.36605 1.19544 0.85933 0.79618 0.79462 0.79295 1.19890 1.20976 1.19934 1.21102 0.93059 0.97760 0.95753 1.19697 0.93360 0.95158 1.01865 1.20849 0.99910 0.93880 1.02568 0.90742 0.91383 0.91016 0.85363 0.85173 0.75187 0.91428 0.90942 0.91611 0.91862 0.91867 0.92347 0.88387 0.96351 0.89465 0.93050 0.77546 0.91816 0.84829 0.90997 0.91122 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.59 36.00 0.35 -0.55 16 2 C -0.07 -0.68 5.89 -104.53 -0.62 -1.30 16 3 C -0.12 -1.37 9.68 -39.64 -0.38 -1.75 16 4 C -0.08 -1.00 9.54 -39.18 -0.37 -1.38 16 5 C -0.13 -1.87 5.87 -104.97 -0.62 -2.48 16 6 C 0.56 8.67 7.77 -12.33 -0.10 8.58 16 7 O -0.55 -10.07 16.35 5.31 0.09 -9.98 16 8 N -0.71 -9.77 5.37 -61.25 -0.33 -10.10 16 9 C 0.13 1.65 4.94 -4.04 -0.02 1.63 16 10 C 0.06 0.74 2.47 -67.71 -0.17 0.57 16 11 H 0.09 0.91 7.93 -51.93 -0.41 0.50 16 12 C -0.18 -1.91 8.41 37.16 0.31 -1.60 16 13 N -0.51 -7.66 3.82 -236.33 -0.90 -8.57 16 14 C 0.02 0.31 8.90 60.07 0.53 0.85 16 15 C 0.04 0.71 4.31 -4.98 -0.02 0.69 16 16 C 0.44 10.24 7.52 -10.99 -0.08 10.16 16 17 O -0.58 -14.93 13.88 5.55 0.08 -14.85 16 18 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.69 13.05 55.50 0.72 -23.96 16 23 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C -0.06 -0.75 9.24 -39.19 -0.36 -1.11 16 28 C -0.10 -1.11 5.87 -104.68 -0.61 -1.72 16 29 C -0.12 -0.93 9.59 36.00 0.35 -0.59 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.07 0.44 5.93 -51.93 -0.31 0.13 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.13 1.49 6.41 -52.49 -0.34 1.15 16 35 H 0.41 5.41 6.11 -40.82 -0.25 5.16 16 36 H 0.07 0.97 6.65 -51.93 -0.35 0.62 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.73 6.54 -51.93 -0.34 0.39 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.65 6.92 -51.93 -0.36 0.29 16 41 H 0.06 0.72 7.98 -51.93 -0.41 0.30 16 42 H 0.10 1.80 5.92 -51.93 -0.31 1.49 16 43 H 0.02 0.25 6.96 -51.93 -0.36 -0.11 16 44 H 0.09 1.47 6.30 -51.93 -0.33 1.15 16 45 H 0.05 0.82 6.81 -51.93 -0.35 0.47 16 46 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 48 H 0.13 1.73 7.65 -52.49 -0.40 1.33 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.07 0.45 5.93 -51.92 -0.31 0.15 16 51 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 LS Contribution 407.63 15.07 6.14 6.14 Total: -1.00 -32.72 407.63 -8.95 -41.67 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -7.61 Total: 15.80 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -2.06 Total: 2.06 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.57 Total: -56.92 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: 0.16 Total: -24.83 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.72 -8.95 -41.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506049718.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.393 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds