Wall clock time and date at job start Wed Apr 1 2020 04:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38379 * 119.85687 * 2 1 4 4 C 1.37941 * 120.14857 * 179.72288 * 3 2 1 5 5 C 1.39595 * 119.85102 * 0.48647 * 4 3 2 6 6 C 1.47837 * 120.14518 * 179.78862 * 5 4 3 7 7 O 1.21555 * 120.00025 * 179.72109 * 6 5 4 8 8 N 1.34777 * 120.00092 * 359.73038 * 6 5 4 9 9 C 1.46502 * 119.99885 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47095 * 175.01538 * 9 8 6 11 11 H 1.08993 * 109.47303 * 174.77917 * 10 9 8 12 12 C 1.53008 * 109.46948 * 294.77740 * 10 9 8 13 13 N 1.46901 * 109.47127 * 54.77662 * 10 9 8 14 14 C 1.46899 * 111.00308 * 55.38860 * 13 10 9 15 15 C 1.46901 * 111.00037 * 179.34868 * 13 10 9 16 16 C 1.50700 * 109.47313 * 170.00019 * 15 13 10 17 17 O 1.21295 * 119.99999 * 359.97438 * 16 15 13 18 18 N 1.34769 * 120.00253 * 179.97438 * 16 15 13 19 19 C 1.37096 * 120.00424 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99963 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00555 * 179.97438 * 19 18 16 22 22 N 1.31405 * 120.00585 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99737 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47476 * 89.99172 * 23 21 19 25 25 H 1.48493 * 109.46971 * 210.00000 * 23 21 19 26 26 H 1.48506 * 109.46870 * 329.99539 * 23 21 19 27 27 C 1.39556 * 119.70764 * 359.51851 * 5 4 3 28 28 C 1.37980 * 119.85805 * 0.24741 * 27 5 4 29 29 C 1.50701 * 119.93157 * 179.97438 * 28 27 5 30 30 H 1.09001 * 109.46991 * 270.02395 * 1 2 3 31 31 H 1.09007 * 109.46867 * 30.02160 * 1 2 3 32 32 H 1.08998 * 109.47176 * 150.01755 * 1 2 3 33 33 H 1.08001 * 119.92926 * 359.97438 * 3 2 1 34 34 H 1.07995 * 120.07549 * 180.27586 * 4 3 2 35 35 H 0.96995 * 119.99878 * 359.97438 * 8 6 5 36 36 H 1.08994 * 109.47634 * 55.01435 * 9 8 6 37 37 H 1.09000 * 109.46875 * 295.01356 * 9 8 6 38 38 H 1.09000 * 109.46655 * 179.97438 * 12 10 9 39 39 H 1.08995 * 109.46752 * 300.00056 * 12 10 9 40 40 H 1.09003 * 109.46878 * 60.00085 * 12 10 9 41 41 H 1.08993 * 109.47070 * 177.40572 * 14 13 10 42 42 H 1.09001 * 109.47070 * 297.41113 * 14 13 10 43 43 H 1.09003 * 109.46835 * 57.40728 * 14 13 10 44 44 H 1.08997 * 109.47516 * 49.99316 * 15 13 10 45 45 H 1.09008 * 109.46572 * 289.99486 * 15 13 10 46 46 H 0.97003 * 120.00066 * 0.02562 * 18 16 15 47 47 H 0.96992 * 120.00260 * 180.02562 * 22 21 19 48 48 H 1.08004 * 120.07237 * 180.27509 * 27 5 4 49 49 H 1.08999 * 109.46426 * 90.00288 * 29 28 27 50 50 H 1.08993 * 109.47196 * 210.00601 * 29 28 27 51 51 H 1.09002 * 109.47221 * 330.00738 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5752 1.2071 0.0058 5 6 4.2763 0.0000 0.0013 6 6 5.7546 0.0000 0.0028 7 8 6.3624 -1.0528 0.0040 8 7 6.4286 1.1671 0.0028 9 6 7.8936 1.1670 0.0037 10 6 8.4037 2.6040 -0.1217 11 1 9.4896 2.6136 -0.0281 12 6 8.0045 3.1697 -1.4862 13 7 7.8133 3.4278 0.9416 14 6 8.0843 2.8521 2.2656 15 6 8.2935 4.8138 0.8619 16 6 7.4912 5.6783 1.8000 17 8 6.6060 5.1881 2.4688 18 7 7.7572 6.9960 1.8957 19 6 7.0270 7.7826 2.7487 20 1 6.2388 7.3462 3.3443 21 6 7.3015 9.1411 2.8479 22 7 6.6020 9.8949 3.6659 23 14 8.6653 9.8959 1.8183 24 1 8.1090 10.3560 0.5206 25 1 9.2511 11.0516 2.5435 26 1 9.7199 8.8797 1.5723 27 6 3.5754 -1.2068 0.0013 28 6 2.1956 -1.1998 0.0004 29 6 1.4370 -2.5020 -0.0002 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8899 -0.5142 32 1 -0.3633 -0.8901 -0.5135 33 1 1.6524 2.1334 -0.0004 34 1 4.1117 2.1444 0.0103 35 1 5.9436 2.0071 0.0016 36 1 8.2574 0.5776 -0.8378 37 1 8.2563 0.7327 0.9353 38 1 8.3676 4.1936 -1.5753 39 1 8.4427 2.5584 -2.2751 40 1 6.9186 3.1602 -1.5798 41 1 7.6760 3.5055 3.0365 42 1 7.6175 1.8697 2.3371 43 1 9.1609 2.7537 2.4055 44 1 8.1782 5.1802 -0.1582 45 1 9.3457 4.8505 1.1443 46 1 8.4648 7.3881 1.3605 47 1 6.7934 10.8432 3.7348 48 1 4.1118 -2.1442 0.0023 49 1 1.2535 -2.8160 1.0273 50 1 0.4856 -2.3680 -0.5147 51 1 2.0235 -3.2639 -0.5137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506049719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:41 Heat of formation + Delta-G solvation = -61.454109 kcal Electronic energy + Delta-G solvation = -30449.558363 eV Core-core repulsion = 26348.046733 eV Total energy + Delta-G solvation = -4101.511630 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.40939 -40.61438 -39.80109 -38.63583 -36.04147 -35.39200 -34.37656 -33.72101 -33.07510 -32.10004 -30.03367 -28.80851 -28.07349 -26.94267 -26.24247 -25.04026 -23.50925 -22.91091 -21.34839 -21.01451 -20.87022 -20.07723 -18.70688 -17.94452 -17.38282 -16.95740 -16.82795 -16.37236 -16.27302 -16.09718 -15.85635 -15.61476 -15.44229 -15.15819 -15.06042 -14.85311 -14.58679 -14.45428 -14.27041 -13.92712 -13.86581 -13.59108 -13.44801 -13.41973 -13.16860 -12.97670 -12.82230 -12.74006 -12.65148 -12.39746 -12.35741 -12.29593 -12.22629 -11.96629 -11.90121 -11.70741 -11.44160 -11.04596 -10.32760 -10.20323 -10.13988 -9.81334 -9.54298 -9.25244 -8.38862 -5.98992 -0.16763 0.36454 1.31063 1.36674 1.45176 1.81006 2.00152 2.17276 2.24476 2.60506 2.82784 3.16912 3.25897 3.65048 3.73817 3.80854 3.91193 3.97906 4.03527 4.10282 4.23825 4.28133 4.32642 4.38896 4.42420 4.54886 4.58495 4.61633 4.70365 4.71927 4.77017 4.79403 4.82237 4.93148 4.94073 4.97387 5.01579 5.17128 5.17783 5.29645 5.32097 5.36036 5.40852 5.43326 5.55560 5.63186 5.89689 5.96400 6.01309 6.15799 6.52636 6.62720 6.92213 7.16294 7.43825 8.01536 8.78782 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.002402 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.395964 B =11654.822003 C =13263.652054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.132 4.132 4 C -0.090 4.090 5 C -0.157 4.157 6 C 0.554 3.446 7 O -0.584 6.584 8 N -0.702 5.702 9 C 0.128 3.872 10 C 0.071 3.929 11 H 0.079 0.921 12 C -0.148 4.148 13 N -0.529 5.529 14 C 0.027 3.973 15 C 0.051 3.949 16 C 0.453 3.547 17 O -0.602 6.602 18 N -0.594 5.594 19 C -0.323 4.323 20 H 0.056 0.944 21 C -0.017 4.017 22 N -0.936 5.936 23 Si 0.963 3.037 24 H -0.256 1.256 25 H -0.278 1.278 26 H -0.231 1.231 27 C -0.072 4.072 28 C -0.103 4.103 29 C -0.115 4.115 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.413 0.587 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.035 0.965 44 H 0.126 0.874 45 H 0.077 0.923 46 H 0.388 0.612 47 H 0.278 0.722 48 H 0.128 0.872 49 H 0.079 0.921 50 H 0.090 0.910 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 -19.361 -14.908 24.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.150 4.150 4 C -0.109 4.109 5 C -0.160 4.160 6 C 0.343 3.657 7 O -0.467 6.467 8 N -0.353 5.353 9 C 0.004 3.996 10 C -0.037 4.037 11 H 0.096 0.904 12 C -0.205 4.205 13 N -0.255 5.255 14 C -0.121 4.121 15 C -0.080 4.080 16 C 0.241 3.759 17 O -0.486 6.486 18 N -0.236 5.236 19 C -0.452 4.452 20 H 0.074 0.926 21 C -0.215 4.215 22 N -0.577 5.577 23 Si 0.783 3.217 24 H -0.181 1.181 25 H -0.204 1.204 26 H -0.155 1.155 27 C -0.091 4.091 28 C -0.103 4.103 29 C -0.171 4.171 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.162 0.838 34 H 0.148 0.852 35 H 0.251 0.749 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.144 0.856 45 H 0.095 0.905 46 H 0.224 0.776 47 H 0.087 0.913 48 H 0.145 0.855 49 H 0.097 0.903 50 H 0.108 0.892 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.134 -20.210 -14.439 25.035 hybrid contribution 1.309 1.418 0.432 1.978 sum -1.825 -18.792 -14.007 23.509 Atomic orbital electron populations 1.21010 0.88732 1.04379 1.03546 1.20369 0.97934 0.92075 0.96023 1.21291 0.93617 0.99018 1.01082 1.21446 0.95325 0.96860 0.97234 1.19919 0.92213 0.95255 1.08607 1.18537 0.87816 0.83638 0.75703 1.90705 1.70723 1.32419 1.52806 1.45826 1.07760 1.08545 1.73206 1.21485 0.79562 0.96295 1.02232 1.22038 0.98202 0.91103 0.92348 0.90365 1.21943 1.02279 1.01991 0.94297 1.61530 1.59686 1.00631 1.03648 1.22386 0.98777 0.99990 0.90940 1.21916 0.96898 0.88667 1.00542 1.20866 0.86563 0.82378 0.86109 1.90530 1.35725 1.73510 1.48839 1.42044 1.33808 1.07915 1.39840 1.18969 1.15492 0.90929 1.19808 0.92632 1.26095 1.00998 0.95896 0.98548 1.69801 1.42341 1.07115 1.38480 0.85389 0.78458 0.79167 0.78651 1.18089 1.20377 1.15456 1.21205 0.94088 0.97188 0.96635 1.20047 0.92797 0.96744 1.00751 1.20921 1.00470 0.92355 1.03353 0.89952 0.90386 0.89338 0.83818 0.85221 0.74857 0.89810 0.92308 0.90979 0.90081 0.92604 0.92690 0.91645 0.94614 0.85609 0.90494 0.77628 0.91279 0.85450 0.90252 0.89182 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 9.59 71.23 0.68 -0.69 16 2 C -0.06 -1.16 5.89 -19.81 -0.12 -1.27 16 3 C -0.13 -2.72 9.68 22.23 0.22 -2.50 16 4 C -0.09 -2.13 9.54 22.53 0.21 -1.92 16 5 C -0.16 -4.12 5.87 -20.09 -0.12 -4.24 16 6 C 0.55 16.00 7.77 86.78 0.67 16.68 16 7 O -0.58 -20.09 16.34 -3.89 -0.06 -20.15 16 8 N -0.70 -17.41 5.00 -465.98 -2.33 -19.74 16 9 C 0.13 2.78 4.59 86.38 0.40 3.18 16 10 C 0.07 1.36 2.34 44.92 0.11 1.46 16 11 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 12 C -0.15 -2.36 8.88 71.98 0.64 -1.72 16 13 N -0.53 -14.22 3.73 -901.60 -3.36 -17.58 16 14 C 0.03 0.81 8.66 127.69 1.11 1.91 16 15 C 0.05 1.42 5.27 85.56 0.45 1.87 16 16 C 0.45 19.34 7.45 87.66 0.65 19.99 16 17 O -0.60 -31.61 13.93 -3.08 -0.04 -31.65 16 18 N -0.59 -26.92 5.09 -306.99 -1.56 -28.48 16 19 C -0.32 -18.45 10.16 84.04 0.85 -17.60 16 20 H 0.06 3.80 7.39 -2.91 -0.02 3.78 16 21 C -0.02 -0.93 5.50 84.93 0.47 -0.47 16 22 N -0.94 -55.94 13.96 21.66 0.30 -55.63 16 23 Si 0.96 37.99 27.74 68.60 1.90 39.89 16 24 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 25 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.23 -7.60 6.52 99.48 0.65 -6.95 16 27 C -0.07 -1.74 9.24 22.53 0.21 -1.53 16 28 C -0.10 -1.98 5.87 -19.90 -0.12 -2.10 16 29 C -0.11 -1.43 9.60 71.24 0.68 -0.75 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.78 8.08 -2.38 -0.02 0.76 16 32 H 0.09 0.72 5.93 -2.39 -0.01 0.71 16 33 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 34 H 0.13 2.98 6.41 -2.91 -0.02 2.96 16 35 H 0.41 10.20 5.45 -92.71 -0.51 9.70 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 1.40 6.71 -2.39 -0.02 1.38 16 38 H 0.07 1.04 6.21 -2.39 -0.01 1.03 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.05 1.02 7.31 -2.39 -0.02 1.00 16 41 H 0.05 2.12 5.80 -2.39 -0.01 2.11 16 42 H 0.06 1.91 6.48 -2.39 -0.02 1.89 16 43 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.13 2.80 5.85 -2.39 -0.01 2.78 16 45 H 0.08 1.81 8.12 -2.38 -0.02 1.79 16 46 H 0.39 14.51 5.76 -92.71 -0.53 13.97 16 47 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 48 H 0.13 3.11 7.65 -2.91 -0.02 3.09 16 49 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.09 0.78 5.93 -2.39 -0.01 0.76 16 51 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 Total: -1.00 -79.02 404.82 1.71 -77.31 By element: Atomic # 1 Polarization: 45.88 SS G_CDS: -0.13 Total: 45.75 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 7.00 Total: 10.29 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -6.96 Total: -121.44 kcal Atomic # 8 Polarization: -51.70 SS G_CDS: -0.11 Total: -51.80 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 1.90 Total: 39.89 kcal Total: -79.02 1.71 -77.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506049719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.856 kcal (2) G-P(sol) polarization free energy of solvation -79.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds