Wall clock time and date at job start Wed Apr 1 2020 05:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31692 * 119.71608 * 2 1 4 4 C 1.31923 * 121.88506 * 180.27626 * 3 2 1 5 5 C 1.50704 * 119.46640 * 180.02562 * 4 3 2 6 6 C 1.53000 * 117.49905 * 163.59815 * 5 4 3 7 7 C 1.53006 * 117.49789 * 94.97418 * 5 4 3 8 8 C 1.38360 * 121.07705 * 0.02562 * 4 3 2 9 9 C 1.38359 * 119.30150 * 359.97438 * 8 4 3 10 10 C 1.39516 * 119.72126 * 180.27152 * 2 1 3 11 11 C 1.47845 * 120.55654 * 359.75050 * 10 2 1 12 12 O 1.21551 * 120.00095 * 354.45122 * 11 10 2 13 13 N 1.34779 * 120.00091 * 174.45446 * 11 10 2 14 14 C 1.46502 * 119.99835 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.46849 * 180.02562 * 14 13 11 16 16 O 1.42903 * 109.47476 * 64.99720 * 15 14 13 17 17 C 1.42904 * 114.00253 * 180.02562 * 16 15 14 18 18 C 1.52990 * 109.47199 * 180.02562 * 17 16 15 19 19 N 1.46497 * 109.47285 * 65.00174 * 18 17 16 20 20 C 1.46505 * 120.00029 * 270.00252 * 19 18 17 21 21 C 1.36939 * 120.00504 * 89.99756 * 19 18 17 22 22 H 1.08002 * 119.99562 * 23.43196 * 21 19 18 23 23 C 1.38808 * 120.00253 * 203.43292 * 21 19 18 24 24 N 1.31621 * 120.00098 * 10.26896 * 23 21 19 25 25 Si 1.86800 * 120.00058 * 190.26025 * 23 21 19 26 26 H 1.48500 * 109.46886 * 94.96919 * 25 23 21 27 27 H 1.48500 * 109.47533 * 214.97092 * 25 23 21 28 28 H 1.48503 * 109.46953 * 334.97385 * 25 23 21 29 29 H 1.09001 * 109.47110 * 263.00724 * 1 2 3 30 30 H 1.08994 * 109.47155 * 23.01113 * 1 2 3 31 31 H 1.09001 * 109.46704 * 143.00944 * 1 2 3 32 32 H 1.08998 * 115.54274 * 309.30979 * 5 4 3 33 33 H 1.08990 * 117.49920 * 0.02562 * 6 5 4 34 34 H 1.09003 * 117.49303 * 145.02132 * 6 5 4 35 35 H 1.08994 * 117.49596 * 214.98436 * 7 5 4 36 36 H 1.08994 * 117.50012 * 359.97438 * 7 5 4 37 37 H 1.08001 * 120.35046 * 180.02562 * 8 4 3 38 38 H 1.07998 * 120.85178 * 180.02562 * 9 8 4 39 39 H 0.97000 * 119.99879 * 359.97438 * 13 11 10 40 40 H 1.09004 * 109.47130 * 299.99457 * 14 13 11 41 41 H 1.08994 * 109.47173 * 59.99914 * 14 13 11 42 42 H 1.08999 * 109.47109 * 184.99914 * 15 14 13 43 43 H 1.09008 * 109.47068 * 304.99850 * 15 14 13 44 44 H 1.09004 * 109.46528 * 300.00539 * 17 16 15 45 45 H 1.08998 * 109.46913 * 59.99739 * 17 16 15 46 46 H 1.09000 * 109.47333 * 185.00133 * 18 17 16 47 47 H 1.08997 * 109.47471 * 304.99806 * 18 17 16 48 48 H 1.08994 * 109.47582 * 95.16103 * 20 19 18 49 49 H 1.09005 * 109.46976 * 215.16983 * 20 19 18 50 50 H 1.09000 * 109.46880 * 335.16036 * 20 19 18 51 51 H 0.96999 * 119.99726 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4780 1.1937 -0.0054 5 6 4.1692 2.5329 -0.0045 6 6 5.6517 2.5625 0.3726 7 6 4.6034 3.1029 1.3474 8 6 4.2366 0.0365 -0.0119 9 6 3.5987 -1.1912 -0.0121 10 6 2.1987 -1.2116 -0.0057 11 6 1.4657 -2.4956 -0.0063 12 8 0.2548 -2.5042 0.1001 13 7 2.1400 -3.6565 -0.1246 14 6 1.4137 -4.9288 -0.1246 15 6 2.4072 -6.0831 -0.2702 16 8 3.2538 -6.1311 0.8801 17 6 4.2242 -7.1795 0.8443 18 6 5.0694 -7.1358 2.1188 19 7 4.2222 -7.4312 3.2769 20 6 3.5421 -6.3429 3.9837 21 6 4.0659 -8.7245 3.6989 22 1 4.8148 -9.4649 3.4593 23 6 2.9450 -9.0839 4.4346 24 7 1.9398 -8.2430 4.5555 25 14 2.8632 -10.7612 5.2528 26 1 3.3153 -10.6467 6.6627 27 1 1.4650 -11.2602 5.2204 28 1 3.7445 -11.7100 4.5260 29 1 -0.3633 -0.1251 1.0200 30 1 -0.3633 0.9458 -0.4017 31 1 -0.3633 -0.8209 -0.6183 32 1 3.8279 3.2384 -0.7620 33 1 6.1272 1.6134 0.6196 34 1 6.2861 3.2877 -0.1371 35 1 4.5482 4.1834 1.4791 36 1 4.3889 2.5095 2.2361 37 1 5.3152 0.0911 -0.0158 38 1 4.1661 -2.1101 -0.0167 39 1 3.1062 -3.6496 -0.2098 40 1 0.8680 -5.0356 0.8130 41 1 0.7112 -4.9462 -0.9578 42 1 1.8619 -7.0227 -0.3594 43 1 3.0146 -5.9294 -1.1622 44 1 3.7168 -8.1419 0.7779 45 1 4.8691 -7.0481 -0.0245 46 1 5.8655 -7.8773 2.0525 47 1 5.5058 -6.1433 2.2316 48 1 2.5275 -6.2382 3.5994 49 1 3.5055 -6.5688 5.0495 50 1 4.0874 -5.4121 3.8282 51 1 1.1567 -8.4941 5.0700 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506976776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:52 Heat of formation + Delta-G solvation = 6.729272 kcal Electronic energy + Delta-G solvation = -30208.019382 eV Core-core repulsion = 26109.464405 eV Total energy + Delta-G solvation = -4098.554977 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.07454 -39.37154 -37.72511 -37.23799 -35.50039 -34.65198 -33.11290 -32.34524 -31.45521 -29.67128 -28.10631 -27.47697 -25.72850 -25.50888 -23.19644 -23.04969 -22.65750 -22.23685 -21.26913 -20.49694 -20.33151 -17.99819 -17.25772 -16.88204 -16.47331 -16.13353 -15.95850 -15.48453 -15.18618 -15.13981 -14.91514 -14.49507 -14.18883 -14.08489 -13.72072 -13.46534 -13.35541 -13.17885 -13.04441 -12.66527 -12.50166 -12.20493 -12.13111 -12.07522 -11.79998 -11.56269 -11.40447 -11.04006 -10.92644 -10.87855 -10.86215 -10.78983 -10.52127 -10.08114 -10.06778 -10.03082 -9.91448 -9.81771 -9.52106 -9.20312 -9.05601 -8.89098 -8.50040 -6.67512 -5.65517 -3.13685 0.41413 0.95198 2.72327 3.07415 3.29463 3.39170 3.45243 3.47010 3.58682 3.81306 4.11676 4.32413 4.43325 4.45268 4.52432 4.53191 4.60782 4.71842 4.84347 5.06722 5.19735 5.22473 5.25017 5.33698 5.42359 5.44193 5.51298 5.55224 5.63684 5.65576 5.67341 5.69056 5.72241 5.76181 5.94760 5.97341 6.05157 6.08449 6.17281 6.20486 6.38514 6.47144 6.52435 6.74285 6.93953 7.43339 7.50615 7.70981 7.74833 7.82718 7.98305 8.15377 8.45882 9.30092 9.93399 10.43976 11.37913 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013492 B = 0.002183 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.816634 B =12825.583066 C =13542.800414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.195 3.805 3 N -0.486 5.486 4 C 0.185 3.815 5 C -0.113 4.113 6 C -0.172 4.172 7 C -0.160 4.160 8 C -0.186 4.186 9 C -0.033 4.033 10 C -0.193 4.193 11 C 0.562 3.438 12 O -0.531 6.531 13 N -0.713 5.713 14 C 0.125 3.875 15 C 0.050 3.950 16 O -0.367 6.367 17 C 0.042 3.958 18 C 0.153 3.847 19 N -0.596 5.596 20 C 0.175 3.825 21 C -0.258 4.258 22 H 0.066 0.934 23 C 0.003 3.997 24 N -0.902 5.902 25 Si 0.902 3.098 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.280 1.280 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.401 0.599 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.044 0.956 44 H 0.049 0.951 45 H 0.024 0.976 46 H 0.058 0.942 47 H 0.042 0.958 48 H 0.034 0.966 49 H 0.035 0.965 50 H -0.008 1.008 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.651 19.388 -13.815 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.056 3.944 3 N -0.195 5.195 4 C 0.047 3.953 5 C -0.132 4.132 6 C -0.210 4.210 7 C -0.197 4.197 8 C -0.206 4.206 9 C -0.059 4.059 10 C -0.198 4.198 11 C 0.349 3.651 12 O -0.409 6.409 13 N -0.365 5.365 14 C 0.002 3.998 15 C -0.028 4.028 16 O -0.286 6.286 17 C -0.037 4.037 18 C 0.025 3.975 19 N -0.319 5.319 20 C 0.030 3.970 21 C -0.388 4.388 22 H 0.084 0.916 23 C -0.196 4.196 24 N -0.547 5.547 25 Si 0.733 3.267 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.206 1.206 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.142 0.858 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.236 0.764 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.043 0.957 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.053 0.947 49 H 0.053 0.947 50 H 0.011 0.989 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.116 20.217 -13.461 24.635 hybrid contribution 0.873 -2.058 0.167 2.242 sum 4.989 18.159 -13.294 23.052 Atomic orbital electron populations 1.21060 0.87356 1.03716 1.04473 1.21509 0.97561 0.86240 0.89047 1.67358 1.09099 1.28819 1.14270 1.20543 0.89166 0.93743 0.91809 1.20824 0.96370 0.94892 1.01094 1.23125 0.90849 1.03615 1.03363 1.22986 1.02282 1.01424 0.93014 1.21869 1.01782 0.92252 1.04704 1.21791 0.93187 0.98814 0.92105 1.20796 0.94359 0.95138 1.09510 1.17939 0.87063 0.83332 0.76808 1.90734 1.13442 1.87059 1.49696 1.45814 1.11028 1.05685 1.73948 1.21445 0.94087 0.80762 1.03525 1.22615 0.93005 0.97722 0.89463 1.88014 1.47846 1.52888 1.39854 1.23526 0.90618 0.90209 0.99358 1.20888 0.92380 0.98373 0.85890 1.43874 1.55066 1.04067 1.28862 1.20698 0.95035 0.85590 0.95659 1.19204 1.02339 0.86547 1.30665 0.91586 1.25067 0.95272 0.97600 1.01653 1.70092 1.06136 1.35103 1.43341 0.86276 0.76842 0.84030 0.79589 1.21587 1.21801 1.20553 0.89729 0.91355 0.87836 0.85837 0.88065 0.87872 0.87970 0.88482 0.84027 0.84112 0.76365 0.89808 0.90278 0.91897 0.93830 0.93252 0.95743 0.92379 0.93927 0.94745 0.94652 0.98908 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 8.87 36.00 0.32 -1.00 16 2 C 0.20 2.53 6.82 -82.18 -0.56 1.96 16 3 N -0.49 -6.10 10.17 -5.42 -0.06 -6.16 16 4 C 0.19 1.94 6.46 -82.51 -0.53 1.41 16 5 C -0.11 -0.89 6.21 -91.77 -0.57 -1.46 16 6 C -0.17 -0.99 9.79 -26.73 -0.26 -1.25 16 7 C -0.16 -1.10 10.24 -26.72 -0.27 -1.37 16 8 C -0.19 -1.72 9.34 -39.49 -0.37 -2.09 16 9 C -0.03 -0.33 9.64 -38.87 -0.37 -0.71 16 10 C -0.19 -2.41 5.89 -104.82 -0.62 -3.03 16 11 C 0.56 7.91 7.71 -12.33 -0.10 7.82 16 12 O -0.53 -8.78 13.37 5.32 0.07 -8.71 16 13 N -0.71 -9.12 5.46 -61.25 -0.33 -9.45 16 14 C 0.12 1.72 6.06 -4.04 -0.02 1.70 16 15 C 0.05 0.69 6.07 37.16 0.23 0.92 16 16 O -0.37 -6.64 9.85 -35.23 -0.35 -6.99 16 17 C 0.04 0.76 6.28 37.15 0.23 0.99 16 18 C 0.15 3.06 6.11 -4.05 -0.02 3.04 16 19 N -0.60 -15.10 2.89 -181.13 -0.52 -15.62 16 20 C 0.17 4.49 8.61 59.85 0.52 5.01 16 21 C -0.26 -7.08 9.67 -15.06 -0.15 -7.23 16 22 H 0.07 1.76 7.84 -52.49 -0.41 1.35 16 23 C 0.00 0.08 5.16 -17.43 -0.09 -0.01 16 24 N -0.90 -26.72 10.59 55.49 0.59 -26.13 16 25 Si 0.90 21.97 29.57 -169.99 -5.03 16.94 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 1.34 5.86 -51.93 -0.30 1.03 16 32 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 0.54 6.38 -51.93 -0.33 0.21 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.14 0.93 6.23 -52.49 -0.33 0.60 16 38 H 0.14 1.11 6.56 -52.49 -0.34 0.76 16 39 H 0.40 4.36 6.61 -40.82 -0.27 4.09 16 40 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.04 0.50 8.14 -51.92 -0.42 0.07 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 47 H 0.04 0.79 7.86 -51.93 -0.41 0.38 16 48 H 0.03 0.97 7.34 -51.93 -0.38 0.59 16 49 H 0.03 0.97 7.30 -51.93 -0.38 0.59 16 50 H -0.01 -0.18 7.83 -51.93 -0.41 -0.58 16 51 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 415.98 15.07 6.27 6.27 Total: -1.00 -33.53 415.98 -10.19 -43.72 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -8.19 Total: 1.43 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -2.65 Total: 4.69 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.32 Total: -57.36 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.28 Total: -15.69 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.53 -10.19 -43.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506976776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.448 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds