Wall clock time and date at job start Wed Apr 1 2020 05:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31692 * 119.71608 * 2 1 4 4 C 1.31923 * 121.88506 * 180.27626 * 3 2 1 5 5 C 1.50704 * 119.46640 * 180.02562 * 4 3 2 6 6 C 1.53000 * 117.49905 * 163.59815 * 5 4 3 7 7 C 1.53006 * 117.49789 * 94.97418 * 5 4 3 8 8 C 1.38360 * 121.07705 * 0.02562 * 4 3 2 9 9 C 1.38359 * 119.30150 * 359.97438 * 8 4 3 10 10 C 1.39516 * 119.72126 * 180.27152 * 2 1 3 11 11 C 1.47845 * 120.55654 * 359.75050 * 10 2 1 12 12 O 1.21551 * 120.00095 * 354.45122 * 11 10 2 13 13 N 1.34779 * 120.00091 * 174.45446 * 11 10 2 14 14 C 1.46502 * 119.99835 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.46849 * 180.02562 * 14 13 11 16 16 O 1.42903 * 109.47476 * 64.99720 * 15 14 13 17 17 C 1.42904 * 114.00253 * 180.02562 * 16 15 14 18 18 C 1.52990 * 109.47199 * 180.02562 * 17 16 15 19 19 N 1.46497 * 109.47285 * 65.00174 * 18 17 16 20 20 C 1.46505 * 120.00029 * 270.00252 * 19 18 17 21 21 C 1.36939 * 120.00504 * 89.99756 * 19 18 17 22 22 H 1.08002 * 119.99562 * 23.43196 * 21 19 18 23 23 C 1.38808 * 120.00253 * 203.43292 * 21 19 18 24 24 N 1.31621 * 120.00098 * 10.26896 * 23 21 19 25 25 Si 1.86800 * 120.00058 * 190.26025 * 23 21 19 26 26 H 1.48500 * 109.46886 * 94.96919 * 25 23 21 27 27 H 1.48500 * 109.47533 * 214.97092 * 25 23 21 28 28 H 1.48503 * 109.46953 * 334.97385 * 25 23 21 29 29 H 1.09001 * 109.47110 * 263.00724 * 1 2 3 30 30 H 1.08994 * 109.47155 * 23.01113 * 1 2 3 31 31 H 1.09001 * 109.46704 * 143.00944 * 1 2 3 32 32 H 1.08998 * 115.54274 * 309.30979 * 5 4 3 33 33 H 1.08990 * 117.49920 * 0.02562 * 6 5 4 34 34 H 1.09003 * 117.49303 * 145.02132 * 6 5 4 35 35 H 1.08994 * 117.49596 * 214.98436 * 7 5 4 36 36 H 1.08994 * 117.50012 * 359.97438 * 7 5 4 37 37 H 1.08001 * 120.35046 * 180.02562 * 8 4 3 38 38 H 1.07998 * 120.85178 * 180.02562 * 9 8 4 39 39 H 0.97000 * 119.99879 * 359.97438 * 13 11 10 40 40 H 1.09004 * 109.47130 * 299.99457 * 14 13 11 41 41 H 1.08994 * 109.47173 * 59.99914 * 14 13 11 42 42 H 1.08999 * 109.47109 * 184.99914 * 15 14 13 43 43 H 1.09008 * 109.47068 * 304.99850 * 15 14 13 44 44 H 1.09004 * 109.46528 * 300.00539 * 17 16 15 45 45 H 1.08998 * 109.46913 * 59.99739 * 17 16 15 46 46 H 1.09000 * 109.47333 * 185.00133 * 18 17 16 47 47 H 1.08997 * 109.47471 * 304.99806 * 18 17 16 48 48 H 1.08994 * 109.47582 * 95.16103 * 20 19 18 49 49 H 1.09005 * 109.46976 * 215.16983 * 20 19 18 50 50 H 1.09000 * 109.46880 * 335.16036 * 20 19 18 51 51 H 0.96999 * 119.99726 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4780 1.1937 -0.0054 5 6 4.1692 2.5329 -0.0045 6 6 5.6517 2.5625 0.3726 7 6 4.6034 3.1029 1.3474 8 6 4.2366 0.0365 -0.0119 9 6 3.5987 -1.1912 -0.0121 10 6 2.1987 -1.2116 -0.0057 11 6 1.4657 -2.4956 -0.0063 12 8 0.2548 -2.5042 0.1001 13 7 2.1400 -3.6565 -0.1246 14 6 1.4137 -4.9288 -0.1246 15 6 2.4072 -6.0831 -0.2702 16 8 3.2538 -6.1311 0.8801 17 6 4.2242 -7.1795 0.8443 18 6 5.0694 -7.1358 2.1188 19 7 4.2222 -7.4312 3.2769 20 6 3.5421 -6.3429 3.9837 21 6 4.0659 -8.7245 3.6989 22 1 4.8148 -9.4649 3.4593 23 6 2.9450 -9.0839 4.4346 24 7 1.9398 -8.2430 4.5555 25 14 2.8632 -10.7612 5.2528 26 1 3.3153 -10.6467 6.6627 27 1 1.4650 -11.2602 5.2204 28 1 3.7445 -11.7100 4.5260 29 1 -0.3633 -0.1251 1.0200 30 1 -0.3633 0.9458 -0.4017 31 1 -0.3633 -0.8209 -0.6183 32 1 3.8279 3.2384 -0.7620 33 1 6.1272 1.6134 0.6196 34 1 6.2861 3.2877 -0.1371 35 1 4.5482 4.1834 1.4791 36 1 4.3889 2.5095 2.2361 37 1 5.3152 0.0911 -0.0158 38 1 4.1661 -2.1101 -0.0167 39 1 3.1062 -3.6496 -0.2098 40 1 0.8680 -5.0356 0.8130 41 1 0.7112 -4.9462 -0.9578 42 1 1.8619 -7.0227 -0.3594 43 1 3.0146 -5.9294 -1.1622 44 1 3.7168 -8.1419 0.7779 45 1 4.8691 -7.0481 -0.0245 46 1 5.8655 -7.8773 2.0525 47 1 5.5058 -6.1433 2.2316 48 1 2.5275 -6.2382 3.5994 49 1 3.5055 -6.5688 5.0495 50 1 4.0874 -5.4121 3.8282 51 1 1.1567 -8.4941 5.0700 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506976776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:51 Heat of formation + Delta-G solvation = -14.473568 kcal Electronic energy + Delta-G solvation = -30208.938806 eV Core-core repulsion = 26109.464405 eV Total energy + Delta-G solvation = -4099.474401 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.96119 -40.37291 -39.03949 -37.91649 -37.21486 -35.93015 -34.03112 -33.37878 -33.18456 -30.98666 -29.54514 -28.51156 -27.81260 -26.34106 -24.82369 -23.92177 -23.63011 -22.88414 -22.23315 -22.12890 -21.33539 -18.95768 -18.77306 -18.09792 -17.59602 -17.27130 -17.07946 -16.75664 -16.46911 -16.24054 -15.89282 -15.72679 -15.36539 -15.22947 -15.15826 -14.88091 -14.67160 -14.25205 -14.05081 -13.88599 -13.81080 -13.47131 -13.13437 -13.10266 -12.95637 -12.76320 -12.72815 -12.52619 -12.45304 -12.32649 -12.30199 -12.01003 -11.78392 -11.65760 -11.64829 -11.40144 -11.02061 -10.90182 -10.62676 -10.47775 -10.35606 -10.23792 -9.78947 -8.72128 -7.77237 -5.26854 -0.45944 0.13622 1.46222 1.47349 1.56282 1.73160 2.04505 2.52473 2.59320 2.79862 2.87031 3.14739 3.35628 3.55155 3.63911 3.66073 3.77937 3.91591 3.93540 3.99774 4.10119 4.16165 4.19338 4.43119 4.47045 4.53949 4.55781 4.60403 4.63084 4.65563 4.70215 4.72014 4.78249 4.86005 4.89406 4.94490 4.98552 5.01983 5.07340 5.12960 5.21826 5.22983 5.26047 5.37400 5.39482 5.56777 5.67017 5.84431 6.36277 6.42757 6.47516 6.85779 7.10908 7.19487 7.93075 8.38494 9.25202 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013492 B = 0.002183 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.816634 B =12825.583066 C =13542.800414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.176 3.824 3 N -0.507 5.507 4 C 0.177 3.823 5 C -0.131 4.131 6 C -0.151 4.151 7 C -0.166 4.166 8 C -0.180 4.180 9 C -0.029 4.029 10 C -0.210 4.210 11 C 0.559 3.441 12 O -0.565 6.565 13 N -0.703 5.703 14 C 0.131 3.869 15 C 0.053 3.947 16 O -0.394 6.394 17 C 0.052 3.948 18 C 0.145 3.855 19 N -0.613 5.613 20 C 0.196 3.804 21 C -0.259 4.259 22 H 0.075 0.925 23 C -0.058 4.058 24 N -0.938 5.938 25 Si 0.966 3.034 26 H -0.290 1.290 27 H -0.299 1.299 28 H -0.264 1.264 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.175 0.825 38 H 0.166 0.834 39 H 0.413 0.587 40 H 0.045 0.955 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.082 0.918 44 H 0.021 0.979 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.001 0.999 49 H 0.005 0.995 50 H 0.019 0.981 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.024 19.723 -15.346 26.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.038 3.962 3 N -0.217 5.217 4 C 0.040 3.960 5 C -0.149 4.149 6 C -0.188 4.188 7 C -0.203 4.203 8 C -0.199 4.199 9 C -0.055 4.055 10 C -0.216 4.216 11 C 0.347 3.653 12 O -0.446 6.446 13 N -0.356 5.356 14 C 0.007 3.993 15 C -0.024 4.024 16 O -0.313 6.313 17 C -0.027 4.027 18 C 0.019 3.981 19 N -0.337 5.337 20 C 0.050 3.950 21 C -0.389 4.389 22 H 0.093 0.907 23 C -0.252 4.252 24 N -0.585 5.585 25 Si 0.795 3.205 26 H -0.217 1.217 27 H -0.226 1.226 28 H -0.188 1.188 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.144 0.856 33 H 0.128 0.872 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.103 0.897 37 H 0.192 0.808 38 H 0.184 0.816 39 H 0.250 0.750 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.039 0.961 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.019 0.981 49 H 0.023 0.977 50 H 0.038 0.962 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.554 20.544 -15.031 26.553 hybrid contribution -0.074 -2.051 0.593 2.136 sum 7.481 18.493 -14.439 24.626 Atomic orbital electron populations 1.20941 0.87704 1.03696 1.03644 1.21591 0.97793 0.86856 0.89994 1.67368 1.10490 1.28649 1.15194 1.21092 0.88704 0.95557 0.90690 1.20902 0.98163 0.93938 1.01935 1.23260 0.89623 1.04281 1.01595 1.23046 1.03058 1.02037 0.92173 1.22230 1.03309 0.91290 1.03070 1.22091 0.92120 1.00339 0.90919 1.20721 0.95550 0.93953 1.11331 1.18251 0.86813 0.84133 0.76133 1.90717 1.14972 1.87584 1.51289 1.45700 1.11539 1.04938 1.73383 1.21317 0.94321 0.81430 1.02196 1.22715 0.92916 0.97231 0.89536 1.87968 1.48550 1.52667 1.42138 1.23257 0.90673 0.88969 0.99826 1.21153 0.92133 0.99893 0.84967 1.44097 1.55420 1.03189 1.30950 1.20316 0.93926 0.87001 0.93718 1.19588 1.02023 0.87593 1.29688 0.90707 1.25844 0.95284 1.01080 1.03028 1.70286 1.06636 1.36948 1.44592 0.85258 0.76425 0.80353 0.78465 1.21681 1.22628 1.18801 0.90736 0.90376 0.88996 0.85565 0.87216 0.85896 0.86769 0.89737 0.80770 0.81646 0.75001 0.93655 0.88663 0.92586 0.89956 0.96101 0.90996 0.90921 0.91967 0.98108 0.97666 0.96209 0.94737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.65 8.87 71.23 0.63 -2.02 16 2 C 0.18 4.66 6.82 42.89 0.29 4.96 16 3 N -0.51 -12.71 10.17 -171.06 -1.74 -14.45 16 4 C 0.18 3.47 6.46 42.58 0.28 3.74 16 5 C -0.13 -1.82 6.21 -11.54 -0.07 -1.89 16 6 C -0.15 -1.24 9.79 30.60 0.30 -0.94 16 7 C -0.17 -1.97 10.24 30.60 0.31 -1.65 16 8 C -0.18 -2.85 9.34 22.33 0.21 -2.64 16 9 C -0.03 -0.52 9.64 22.73 0.22 -0.30 16 10 C -0.21 -5.22 5.89 -19.99 -0.12 -5.34 16 11 C 0.56 15.95 7.71 86.79 0.67 16.62 16 12 O -0.56 -19.61 13.37 -3.88 -0.05 -19.66 16 13 N -0.70 -17.41 5.46 -465.97 -2.54 -19.96 16 14 C 0.13 3.59 6.06 86.38 0.52 4.12 16 15 C 0.05 1.39 6.07 71.98 0.44 1.83 16 16 O -0.39 -13.60 9.85 -148.98 -1.47 -15.07 16 17 C 0.05 1.71 6.28 71.98 0.45 2.17 16 18 C 0.14 5.42 6.11 86.38 0.53 5.95 16 19 N -0.61 -30.64 2.89 -726.96 -2.10 -32.74 16 20 C 0.20 10.17 8.61 127.77 1.10 11.27 16 21 C -0.26 -14.08 9.67 84.03 0.81 -13.27 16 22 H 0.08 3.87 7.84 -2.91 -0.02 3.85 16 23 C -0.06 -3.27 5.16 84.86 0.44 -2.83 16 24 N -0.94 -57.23 10.59 21.65 0.23 -57.00 16 25 Si 0.97 45.54 29.57 68.60 2.03 47.57 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 27 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 28 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.09 2.56 5.86 -2.39 -0.01 2.55 16 32 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.11 0.72 6.38 -2.39 -0.02 0.71 16 34 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.18 1.54 6.23 -2.91 -0.02 1.53 16 38 H 0.17 2.05 6.56 -2.91 -0.02 2.03 16 39 H 0.41 8.04 6.61 -92.71 -0.61 7.43 16 40 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.07 2.50 8.03 -2.39 -0.02 2.48 16 47 H 0.06 2.09 7.86 -2.39 -0.02 2.07 16 48 H 0.00 0.03 7.34 -2.39 -0.02 0.02 16 49 H 0.00 0.26 7.30 -2.38 -0.02 0.24 16 50 H 0.02 0.89 7.83 -2.39 -0.02 0.87 16 51 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -75.46 415.98 1.69 -73.77 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.32 Total: 17.77 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 7.01 Total: 19.77 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -6.15 Total: -124.15 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -1.52 Total: -34.73 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -75.46 1.69 -73.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506976776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.299 kcal (2) G-P(sol) polarization free energy of solvation -75.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds