Wall clock time and date at job start Wed Apr 1 2020 04:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99503 * 2 1 4 4 C 1.38231 * 119.99892 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00319 * 180.02562 * 4 3 2 6 6 C 1.38243 * 120.00070 * 359.90902 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.07188 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47148 * 89.99755 * 8 7 6 10 10 O 1.21286 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99697 * 0.02562 * 11 9 8 13 13 C 1.46492 * 120.00345 * 180.02562 * 11 9 8 14 14 C 1.53001 * 109.47512 * 90.00234 * 13 11 9 15 15 N 1.46895 * 109.47271 * 180.02562 * 14 13 11 16 16 C 1.46906 * 110.99644 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46813 * 179.97438 * 16 15 14 18 18 O 1.21295 * 120.00412 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99723 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99721 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00374 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99867 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00329 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 120.00116 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47021 * 90.00094 * 24 22 20 26 26 H 1.48497 * 109.47077 * 210.00063 * 24 22 20 27 27 H 1.48497 * 109.46904 * 329.99908 * 24 22 20 28 28 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 29 29 H 1.08999 * 109.46630 * 269.97351 * 1 2 3 30 30 H 1.08992 * 109.47454 * 29.97431 * 1 2 3 31 31 H 1.08996 * 109.46937 * 149.97950 * 1 2 3 32 32 H 1.07997 * 120.00455 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47060 * 269.91029 * 5 4 3 34 34 H 1.08998 * 109.46941 * 29.90973 * 5 4 3 35 35 H 1.08998 * 109.47482 * 149.91122 * 5 4 3 36 36 H 1.08000 * 119.99728 * 180.34119 * 6 4 3 37 37 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 38 38 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 39 39 H 1.09000 * 109.47245 * 89.99535 * 12 11 9 40 40 H 1.08998 * 109.47120 * 209.99674 * 12 11 9 41 41 H 1.09004 * 109.46914 * 329.99446 * 12 11 9 42 42 H 1.09000 * 109.47579 * 210.00775 * 13 11 9 43 43 H 1.09002 * 109.47216 * 330.00066 * 13 11 9 44 44 H 1.09001 * 109.46650 * 300.00612 * 14 13 11 45 45 H 1.08994 * 109.46673 * 59.99638 * 14 13 11 46 46 H 1.00898 * 111.00048 * 56.05015 * 15 14 13 47 47 H 1.08993 * 109.47439 * 300.00082 * 16 15 14 48 48 H 1.08994 * 109.46928 * 60.00453 * 16 15 14 49 49 H 0.96992 * 120.00382 * 0.02562 * 19 17 16 50 50 H 0.96998 * 120.00481 * 179.97438 * 23 22 20 51 51 H 1.08001 * 120.00371 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 0.0000 6 6 4.2717 0.0001 0.0008 7 6 3.5806 -1.1970 0.0012 8 6 4.3341 -2.5021 0.0021 9 6 4.5849 -2.9364 1.4233 10 8 4.1902 -2.2536 2.3446 11 7 5.2470 -4.0840 1.6704 12 6 5.7233 -4.9090 0.5575 13 6 5.4903 -4.5064 3.0518 14 6 4.3256 -5.3744 3.5325 15 7 4.5693 -5.7974 4.9179 16 6 3.4685 -6.6342 5.4142 17 6 3.7536 -7.0485 6.8348 18 8 4.7732 -6.6824 7.3804 19 7 2.8751 -7.8250 7.4994 20 6 3.1342 -8.2014 8.7920 21 1 4.0421 -7.8754 9.2778 22 6 2.2288 -9.0024 9.4771 23 7 1.1239 -9.3988 8.8862 24 14 2.5814 -9.5149 11.2385 25 1 2.0147 -8.5068 12.1701 26 1 1.9605 -10.8376 11.5030 27 1 4.0494 -9.6075 11.4426 28 6 2.1983 -1.1971 0.0008 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6581 2.1325 0.0004 33 1 4.5166 2.8170 -1.0275 34 1 3.7443 3.2621 0.5132 35 1 5.2858 2.3723 0.5148 36 1 5.3517 0.0003 0.0060 37 1 3.7453 -3.2620 -0.5115 38 1 5.2867 -2.3719 -0.5114 39 1 6.7316 -4.6000 0.2816 40 1 5.7342 -5.9561 0.8601 41 1 5.0585 -4.7848 -0.2974 42 1 6.4152 -5.0812 3.0986 43 1 5.5762 -3.6275 3.6908 44 1 3.4007 -4.7995 3.4858 45 1 4.2397 -6.2532 2.8935 46 1 4.7164 -5.0004 5.5188 47 1 2.5379 -6.0679 5.3803 48 1 3.3766 -7.5221 4.7887 49 1 2.0596 -8.1175 7.0633 50 1 0.4920 -9.9582 9.3643 51 1 1.6583 -2.1324 0.0007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567555289.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:41 Heat of formation + Delta-G solvation = -56.127141 kcal Electronic energy + Delta-G solvation = -29087.139123 eV Core-core repulsion = 24985.858487 eV Total energy + Delta-G solvation = -4101.280635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.50627 -39.39454 -38.25342 -36.38305 -34.96390 -33.89110 -33.76615 -33.70602 -31.22413 -30.25208 -28.52273 -27.33034 -27.03908 -26.94932 -25.67615 -23.93822 -22.35287 -21.17440 -20.99377 -19.41333 -19.04648 -17.86777 -17.34297 -16.65677 -16.51189 -16.20356 -16.07624 -15.50480 -15.31497 -14.66223 -14.53155 -14.36523 -14.12607 -13.82313 -13.69183 -13.56730 -13.48454 -13.27109 -13.22099 -13.18127 -13.05786 -12.82068 -12.65763 -12.62272 -12.18972 -12.09388 -11.88947 -11.72698 -11.49074 -11.47857 -11.27829 -11.23005 -11.09064 -10.94988 -10.37544 -10.19864 -10.03333 -9.48788 -8.93770 -8.83166 -8.75072 -8.43161 -8.05701 -7.93727 -6.39485 -3.80266 1.09934 1.16600 2.42995 2.73022 3.19726 3.28067 3.34334 3.48924 3.93492 4.15021 4.28657 4.37107 4.45301 4.50018 4.53285 4.77290 4.86426 4.90134 4.97355 5.00364 5.04178 5.07367 5.16478 5.20829 5.24619 5.27011 5.28353 5.30787 5.33105 5.36078 5.37881 5.52809 5.55925 5.59785 5.77282 5.86677 5.89665 5.92397 5.95231 6.01302 6.23363 6.28990 6.30309 6.33134 6.40106 6.79790 7.13512 7.20396 7.57401 7.66045 7.98564 8.08627 8.63681 9.20073 9.56645 10.08212 10.78310 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.001655 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.617223 B =16909.776231 C =17766.115021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.081 4.081 3 C -0.122 4.122 4 C -0.083 4.083 5 C -0.114 4.114 6 C -0.111 4.111 7 C -0.059 4.059 8 C -0.100 4.100 9 C 0.512 3.488 10 O -0.525 6.525 11 N -0.617 5.617 12 C 0.076 3.924 13 C 0.117 3.883 14 C 0.047 3.953 15 N -0.667 5.667 16 C 0.052 3.948 17 C 0.442 3.558 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C -0.111 4.111 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.030 0.970 45 H 0.070 0.930 46 H 0.351 0.649 47 H 0.044 0.956 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.946 17.185 -26.920 32.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.081 4.081 3 C -0.140 4.140 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.129 4.129 7 C -0.059 4.059 8 C -0.140 4.140 9 C 0.300 3.700 10 O -0.400 6.400 11 N -0.352 5.352 12 C -0.068 4.068 13 C -0.006 4.006 14 C -0.084 4.084 15 N -0.300 5.300 16 C -0.080 4.080 17 C 0.227 3.773 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.129 4.129 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.137 0.863 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.136 0.864 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.048 0.952 45 H 0.088 0.912 46 H 0.170 0.830 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.665 17.135 -26.150 31.478 hybrid contribution -1.137 -0.090 0.697 1.336 sum 2.529 17.045 -25.453 30.737 Atomic orbital electron populations 1.20793 0.91161 1.02616 1.02547 1.19848 0.96027 0.93006 0.99243 1.20882 0.93512 0.97479 1.02128 1.19836 0.93815 0.95174 0.99431 1.20782 0.99998 0.94095 1.02144 1.20797 0.99393 0.91453 1.01275 1.19218 0.93498 0.93467 0.99725 1.20709 1.02123 0.96210 0.94948 1.20570 0.77699 0.80475 0.91303 1.90758 1.49577 1.53365 1.46276 1.47855 1.57246 1.22673 1.07420 1.21860 0.99611 0.96076 0.89223 1.21410 0.98473 0.99353 0.81326 1.22249 0.96883 0.98176 0.91119 1.60035 1.42923 1.25174 1.01829 1.21654 0.92232 0.97988 0.96166 1.19796 0.85806 0.84185 0.87522 1.90521 1.27686 1.59096 1.69378 1.41856 1.20320 1.44541 1.13353 1.19715 1.06602 1.28149 0.88399 0.87896 1.25267 0.95288 0.97082 1.00353 1.69614 1.10213 1.36416 1.38128 0.85847 0.78784 0.77757 0.81837 1.20435 1.20933 1.19401 1.20817 0.93318 0.97627 1.01108 0.91020 0.91619 0.91541 0.86268 0.91263 0.91560 0.91523 0.86410 0.87949 0.88001 0.92326 0.90459 0.91026 0.89337 0.89780 0.95193 0.91185 0.82976 0.93842 0.89646 0.77461 0.91897 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 2 C -0.08 -0.78 5.88 -104.62 -0.62 -1.40 16 3 C -0.12 -1.14 9.36 -39.59 -0.37 -1.51 16 4 C -0.08 -0.77 5.88 -104.62 -0.62 -1.39 16 5 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 6 C -0.11 -1.09 9.36 -39.58 -0.37 -1.46 16 7 C -0.06 -0.58 4.37 -104.63 -0.46 -1.04 16 8 C -0.10 -0.78 4.38 -29.03 -0.13 -0.90 16 9 C 0.51 5.80 7.67 -10.99 -0.08 5.72 16 10 O -0.52 -8.37 15.61 5.55 0.09 -8.29 16 11 N -0.62 -6.00 2.87 -181.57 -0.52 -6.53 16 12 C 0.08 0.43 10.24 59.85 0.61 1.04 16 13 C 0.12 1.38 5.67 -4.05 -0.02 1.36 16 14 C 0.05 0.63 6.01 -3.83 -0.02 0.60 16 15 N -0.67 -11.39 6.13 -115.06 -0.70 -12.10 16 16 C 0.05 0.97 6.17 -4.97 -0.03 0.94 16 17 C 0.44 10.78 7.82 -10.99 -0.09 10.70 16 18 O -0.58 -16.27 15.78 5.54 0.09 -16.18 16 19 N -0.56 -14.68 5.29 -10.96 -0.06 -14.74 16 20 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 21 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.92 13.05 55.50 0.72 -24.19 16 24 Si 0.93 21.38 29.55 -169.99 -5.02 16.35 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C -0.11 -1.12 9.36 -39.59 -0.37 -1.49 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 35 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.10 0.58 7.34 -51.93 -0.38 0.19 16 38 H 0.10 0.55 8.05 -51.93 -0.42 0.13 16 39 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.08 0.42 8.07 -51.93 -0.42 0.00 16 41 H 0.07 0.27 6.44 -51.93 -0.33 -0.07 16 42 H 0.09 0.96 8.07 -51.93 -0.42 0.54 16 43 H 0.08 1.15 7.42 -51.93 -0.39 0.76 16 44 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.35 6.33 8.43 -39.29 -0.33 6.00 16 47 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 49 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 50 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 51 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 427.67 15.07 6.44 6.44 Total: -1.00 -35.52 427.67 -9.47 -45.00 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -8.43 Total: 12.10 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.08 Total: 2.13 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.56 Total: -57.56 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: 0.17 Total: -24.47 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -35.52 -9.47 -45.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567555289.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.132 kcal (2) G-P(sol) polarization free energy of solvation -35.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds