Wall clock time and date at job start Wed Apr 1 2020 04:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99503 * 2 1 4 4 C 1.38231 * 119.99892 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00319 * 180.02562 * 4 3 2 6 6 C 1.38243 * 120.00070 * 359.90902 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.07188 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47148 * 89.99755 * 8 7 6 10 10 O 1.21286 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99697 * 0.02562 * 11 9 8 13 13 C 1.46492 * 120.00345 * 180.02562 * 11 9 8 14 14 C 1.53001 * 109.47512 * 90.00234 * 13 11 9 15 15 N 1.46895 * 109.47271 * 180.02562 * 14 13 11 16 16 C 1.46906 * 110.99644 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46813 * 179.97438 * 16 15 14 18 18 O 1.21295 * 120.00412 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99723 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99721 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00374 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99867 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00329 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 120.00116 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47021 * 90.00094 * 24 22 20 26 26 H 1.48497 * 109.47077 * 210.00063 * 24 22 20 27 27 H 1.48497 * 109.46904 * 329.99908 * 24 22 20 28 28 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 29 29 H 1.08999 * 109.46630 * 269.97351 * 1 2 3 30 30 H 1.08992 * 109.47454 * 29.97431 * 1 2 3 31 31 H 1.08996 * 109.46937 * 149.97950 * 1 2 3 32 32 H 1.07997 * 120.00455 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47060 * 269.91029 * 5 4 3 34 34 H 1.08998 * 109.46941 * 29.90973 * 5 4 3 35 35 H 1.08998 * 109.47482 * 149.91122 * 5 4 3 36 36 H 1.08000 * 119.99728 * 180.34119 * 6 4 3 37 37 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 38 38 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 39 39 H 1.09000 * 109.47245 * 89.99535 * 12 11 9 40 40 H 1.08998 * 109.47120 * 209.99674 * 12 11 9 41 41 H 1.09004 * 109.46914 * 329.99446 * 12 11 9 42 42 H 1.09000 * 109.47579 * 210.00775 * 13 11 9 43 43 H 1.09002 * 109.47216 * 330.00066 * 13 11 9 44 44 H 1.09001 * 109.46650 * 300.00612 * 14 13 11 45 45 H 1.08994 * 109.46673 * 59.99638 * 14 13 11 46 46 H 1.00898 * 111.00048 * 56.05015 * 15 14 13 47 47 H 1.08993 * 109.47439 * 300.00082 * 16 15 14 48 48 H 1.08994 * 109.46928 * 60.00453 * 16 15 14 49 49 H 0.96992 * 120.00382 * 0.02562 * 19 17 16 50 50 H 0.96998 * 120.00481 * 179.97438 * 23 22 20 51 51 H 1.08001 * 120.00371 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 0.0000 6 6 4.2717 0.0001 0.0008 7 6 3.5806 -1.1970 0.0012 8 6 4.3341 -2.5021 0.0021 9 6 4.5849 -2.9364 1.4233 10 8 4.1902 -2.2536 2.3446 11 7 5.2470 -4.0840 1.6704 12 6 5.7233 -4.9090 0.5575 13 6 5.4903 -4.5064 3.0518 14 6 4.3256 -5.3744 3.5325 15 7 4.5693 -5.7974 4.9179 16 6 3.4685 -6.6342 5.4142 17 6 3.7536 -7.0485 6.8348 18 8 4.7732 -6.6824 7.3804 19 7 2.8751 -7.8250 7.4994 20 6 3.1342 -8.2014 8.7920 21 1 4.0421 -7.8754 9.2778 22 6 2.2288 -9.0024 9.4771 23 7 1.1239 -9.3988 8.8862 24 14 2.5814 -9.5149 11.2385 25 1 2.0147 -8.5068 12.1701 26 1 1.9605 -10.8376 11.5030 27 1 4.0494 -9.6075 11.4426 28 6 2.1983 -1.1971 0.0008 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6581 2.1325 0.0004 33 1 4.5166 2.8170 -1.0275 34 1 3.7443 3.2621 0.5132 35 1 5.2858 2.3723 0.5148 36 1 5.3517 0.0003 0.0060 37 1 3.7453 -3.2620 -0.5115 38 1 5.2867 -2.3719 -0.5114 39 1 6.7316 -4.6000 0.2816 40 1 5.7342 -5.9561 0.8601 41 1 5.0585 -4.7848 -0.2974 42 1 6.4152 -5.0812 3.0986 43 1 5.5762 -3.6275 3.6908 44 1 3.4007 -4.7995 3.4858 45 1 4.2397 -6.2532 2.8935 46 1 4.7164 -5.0004 5.5188 47 1 2.5379 -6.0679 5.3803 48 1 3.3766 -7.5221 4.7887 49 1 2.0596 -8.1175 7.0633 50 1 0.4920 -9.9582 9.3643 51 1 1.6583 -2.1324 0.0007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567555289.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:40 Heat of formation + Delta-G solvation = -79.866023 kcal Electronic energy + Delta-G solvation = -29088.168518 eV Core-core repulsion = 24985.858487 eV Total energy + Delta-G solvation = -4102.310031 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.28811 -40.24614 -40.05009 -37.51714 -36.23932 -35.72179 -34.49398 -34.38349 -33.30076 -31.32793 -29.31090 -28.13081 -27.90245 -27.57213 -27.00571 -25.55141 -23.45732 -21.95357 -21.63651 -21.14359 -20.05750 -19.85273 -18.17463 -17.91920 -17.38851 -17.15066 -17.04147 -16.90470 -16.50048 -16.11854 -15.93184 -15.40098 -15.32021 -15.05305 -14.84627 -14.74367 -14.14790 -14.08850 -14.01742 -13.90308 -13.83607 -13.78422 -13.54189 -13.39006 -13.35695 -13.25145 -13.08934 -12.90130 -12.75451 -12.52364 -12.43628 -12.36762 -12.12728 -12.12306 -11.86521 -11.85998 -11.53040 -10.93594 -10.41929 -10.04341 -9.71648 -9.52040 -9.46502 -9.42987 -8.48500 -5.97754 0.40500 0.47335 1.37093 1.40939 1.54078 1.60506 1.94768 2.01347 2.28696 2.78614 2.97664 3.18120 3.49683 3.62710 3.78242 3.84699 3.93376 4.01617 4.12371 4.21982 4.26505 4.30286 4.38828 4.43059 4.44314 4.47094 4.52015 4.54312 4.58518 4.67194 4.69137 4.74394 4.77969 4.80655 4.82676 4.94371 4.98685 5.01316 5.05232 5.27211 5.35193 5.38975 5.45623 5.60764 5.64069 5.72170 5.81080 6.03416 6.14407 6.24043 6.39245 6.57132 7.09838 7.17116 7.52519 8.07668 8.68896 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.001655 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.617223 B =16909.776231 C =17766.115021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.094 4.094 5 C -0.112 4.112 6 C -0.129 4.129 7 C -0.071 4.071 8 C -0.092 4.092 9 C 0.507 3.493 10 O -0.582 6.582 11 N -0.613 5.613 12 C 0.067 3.933 13 C 0.123 3.877 14 C 0.056 3.944 15 N -0.676 5.676 16 C 0.066 3.934 17 C 0.437 3.563 18 O -0.622 6.622 19 N -0.572 5.572 20 C -0.336 4.336 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.995 3.005 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.272 1.272 28 C -0.131 4.131 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.058 0.942 44 H 0.017 0.983 45 H 0.089 0.911 46 H 0.342 0.658 47 H 0.059 0.941 48 H 0.110 0.890 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 16.642 -28.702 33.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.155 4.155 4 C -0.094 4.094 5 C -0.168 4.168 6 C -0.147 4.147 7 C -0.071 4.071 8 C -0.131 4.131 9 C 0.296 3.704 10 O -0.461 6.461 11 N -0.346 5.346 12 C -0.074 4.074 13 C -0.001 4.001 14 C -0.074 4.074 15 N -0.308 5.308 16 C -0.066 4.066 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.209 5.209 20 C -0.466 4.466 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.560 5.560 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.193 1.193 27 H -0.197 1.197 28 C -0.150 4.150 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.152 0.848 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.077 0.923 44 H 0.035 0.965 45 H 0.108 0.892 46 H 0.160 0.840 47 H 0.077 0.923 48 H 0.128 0.872 49 H 0.231 0.769 50 H 0.088 0.912 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.661 16.561 -27.997 32.734 hybrid contribution -1.119 0.096 1.202 1.645 sum 2.542 16.657 -26.794 31.652 Atomic orbital electron populations 1.20817 0.89857 1.03727 1.02539 1.20194 0.97256 0.93137 0.98938 1.21163 0.93867 0.98122 1.02331 1.20208 0.94211 0.96177 0.98828 1.20814 0.99777 0.93065 1.03161 1.21066 1.00084 0.91821 1.01766 1.19515 0.93731 0.94513 0.99362 1.20762 1.03722 0.95807 0.92773 1.21223 0.76762 0.80184 0.92190 1.90735 1.52027 1.55181 1.48162 1.47945 1.56507 1.22671 1.07470 1.22183 1.01093 0.95685 0.88463 1.21217 0.98281 0.98101 0.82500 1.22256 0.96956 0.98937 0.89243 1.60069 1.42451 1.24928 1.03319 1.21526 0.93260 0.99379 0.92454 1.20798 0.84642 0.82661 0.89444 1.90489 1.29268 1.60204 1.70937 1.41918 1.20842 1.45125 1.12984 1.19694 1.06745 1.30173 0.89969 0.90261 1.26075 0.94770 0.96291 1.04141 1.69673 1.10540 1.36252 1.39582 0.84899 0.78417 0.77974 0.76862 1.19692 1.19347 1.19721 1.21063 0.93842 0.98152 1.01897 0.91471 0.90258 0.90739 0.84827 0.89815 0.91001 0.91422 0.85468 0.85346 0.85193 0.90623 0.89875 0.88517 0.88062 0.92325 0.96511 0.89231 0.83993 0.92306 0.87236 0.76948 0.91227 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.01 71.24 0.71 -0.88 16 2 C -0.10 -1.82 5.88 -19.87 -0.12 -1.94 16 3 C -0.14 -2.52 9.36 22.27 0.21 -2.31 16 4 C -0.09 -1.73 5.88 -19.86 -0.12 -1.84 16 5 C -0.11 -1.42 10.01 71.24 0.71 -0.71 16 6 C -0.13 -2.48 9.36 22.27 0.21 -2.27 16 7 C -0.07 -1.36 4.37 -19.87 -0.09 -1.44 16 8 C -0.09 -1.23 4.38 29.10 0.13 -1.11 16 9 C 0.51 11.02 7.67 87.66 0.67 11.69 16 10 O -0.58 -19.02 15.61 -3.05 -0.05 -19.07 16 11 N -0.61 -10.87 2.87 -846.77 -2.43 -13.30 16 12 C 0.07 0.54 10.24 127.77 1.31 1.84 16 13 C 0.12 2.81 5.67 86.38 0.49 3.30 16 14 C 0.06 1.46 6.01 86.30 0.52 1.97 16 15 N -0.68 -22.82 6.13 -517.95 -3.17 -26.00 16 16 C 0.07 2.41 6.17 85.56 0.53 2.94 16 17 C 0.44 21.62 7.82 87.66 0.69 22.31 16 18 O -0.62 -35.67 15.78 -3.08 -0.05 -35.71 16 19 N -0.57 -30.20 5.29 -306.98 -1.62 -31.82 16 20 C -0.34 -19.54 9.68 84.04 0.81 -18.72 16 21 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 23 N -0.92 -50.28 13.05 21.66 0.28 -50.00 16 24 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 27 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 28 C -0.13 -2.63 9.36 22.27 0.21 -2.42 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 31 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 32 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.81 8.08 -2.39 -0.02 0.80 16 35 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 36 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 37 H 0.13 1.04 7.34 -2.39 -0.02 1.02 16 38 H 0.13 1.00 8.05 -2.39 -0.02 0.98 16 39 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.08 0.62 8.07 -2.39 -0.02 0.60 16 41 H 0.10 0.32 6.44 -2.38 -0.02 0.30 16 42 H 0.10 2.05 8.07 -2.39 -0.02 2.03 16 43 H 0.06 1.66 7.42 -2.39 -0.02 1.64 16 44 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.34 12.61 8.43 -89.70 -0.76 11.85 16 47 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 49 H 0.40 19.84 7.90 -92.71 -0.73 19.11 16 50 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 51 H 0.12 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -79.16 427.67 1.78 -77.38 By element: Atomic # 1 Polarization: 43.30 SS G_CDS: -0.55 Total: 42.75 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 7.34 Total: 10.19 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -6.95 Total: -121.11 kcal Atomic # 8 Polarization: -54.69 SS G_CDS: -0.10 Total: -54.79 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -79.16 1.78 -77.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567555289.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.483 kcal (2) G-P(sol) polarization free energy of solvation -79.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds