Wall clock time and date at job start Wed Apr 1 2020 04:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38390 * 119.85424 * 2 1 4 4 C 1.37933 * 120.14573 * 180.23615 * 3 2 1 5 5 C 1.39597 * 119.85287 * 359.51187 * 4 3 2 6 6 C 1.47848 * 120.14556 * 180.27846 * 5 4 3 7 7 O 1.21551 * 120.00029 * 179.97438 * 6 5 4 8 8 N 1.34772 * 119.99906 * 0.02562 * 6 5 4 9 9 C 1.46501 * 120.00048 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47204 * 179.97438 * 9 8 6 11 11 H 1.08997 * 109.47295 * 305.00674 * 10 9 8 12 12 C 1.53005 * 109.46834 * 64.99732 * 10 9 8 13 13 C 1.52999 * 109.47353 * 184.99766 * 10 9 8 14 14 N 1.46891 * 109.47145 * 175.00072 * 13 10 9 15 15 C 1.46898 * 111.00064 * 180.02562 * 14 13 10 16 16 C 1.50700 * 109.47520 * 180.02562 * 15 14 13 17 17 O 1.21296 * 119.99490 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00272 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00205 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99905 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00344 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99856 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00370 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46994 * 60.00101 * 23 21 19 25 25 H 1.48503 * 109.47276 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47166 * 300.00297 * 23 21 19 27 27 C 1.39559 * 119.71316 * 0.25198 * 5 4 3 28 28 C 1.37980 * 119.84918 * 0.02562 * 27 5 4 29 29 C 1.50706 * 119.92477 * 179.97438 * 28 27 5 30 30 H 1.09003 * 109.47129 * 270.23352 * 1 2 3 31 31 H 1.08998 * 109.47413 * 30.22659 * 1 2 3 32 32 H 1.08993 * 109.46954 * 150.23529 * 1 2 3 33 33 H 1.07998 * 119.92444 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.07617 * 179.79393 * 4 3 2 35 35 H 0.97006 * 120.00132 * 359.97438 * 8 6 5 36 36 H 1.08994 * 109.47125 * 299.99850 * 9 8 6 37 37 H 1.08996 * 109.47077 * 60.00124 * 9 8 6 38 38 H 1.08996 * 109.47439 * 300.00200 * 12 10 9 39 39 H 1.09005 * 109.46741 * 60.00377 * 12 10 9 40 40 H 1.08996 * 109.47325 * 179.97438 * 12 10 9 41 41 H 1.09002 * 109.47061 * 295.00321 * 13 10 9 42 42 H 1.09004 * 109.46505 * 55.00042 * 13 10 9 43 43 H 1.00904 * 110.99890 * 56.05211 * 14 13 10 44 44 H 1.09002 * 109.47505 * 300.00506 * 15 14 13 45 45 H 1.09002 * 109.47321 * 60.00064 * 15 14 13 46 46 H 0.97006 * 120.00095 * 0.02562 * 18 16 15 47 47 H 0.97006 * 120.00117 * 180.02562 * 22 21 19 48 48 H 1.07997 * 120.07558 * 180.02562 * 27 5 4 49 49 H 1.08999 * 109.47345 * 89.99594 * 29 28 27 50 50 H 1.09007 * 109.46402 * 209.99830 * 29 28 27 51 51 H 1.08995 * 109.46837 * 329.99224 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5751 1.2073 -0.0049 5 6 4.2762 0.0001 0.0004 6 6 5.7547 0.0001 0.0014 7 8 6.3624 -1.0525 0.0065 8 7 6.4285 1.1673 -0.0023 9 6 7.8935 1.1673 -0.0019 10 6 8.4035 2.6099 -0.0072 11 1 7.9691 3.1457 -0.8511 12 6 7.9983 3.2989 1.2974 13 6 9.9284 2.6113 -0.1325 14 7 10.4081 3.9940 -0.2580 15 6 11.8713 4.0345 -0.3812 16 6 12.3255 5.4659 -0.5070 17 8 11.5104 6.3640 -0.4947 18 7 13.6374 5.7481 -0.6321 19 6 14.0507 7.0503 -0.7460 20 1 13.3249 7.8500 -0.7359 21 6 15.4032 7.3413 -0.8745 22 7 16.2864 6.3682 -0.8873 23 14 15.9663 9.1156 -1.0304 24 1 15.5489 9.8751 0.1755 25 1 17.4455 9.1565 -1.1543 26 1 15.3519 9.7257 -2.2368 27 6 3.5754 -1.2068 0.0054 28 6 2.1956 -1.1997 0.0044 29 6 1.4372 -2.5020 0.0092 30 1 -0.3633 0.0042 1.0277 31 1 -0.3634 0.8879 -0.5173 32 1 -0.3633 -0.8920 -0.5101 33 1 1.6522 2.1335 0.0004 34 1 4.1116 2.1446 -0.0083 35 1 5.9435 2.0074 -0.0060 36 1 8.2566 0.6566 0.8899 37 1 8.2571 0.6506 -0.8900 38 1 6.9120 3.2978 1.3867 39 1 8.4327 2.7630 2.1414 40 1 8.3619 4.3263 1.2939 41 1 10.3662 2.1539 0.7548 42 1 10.2208 2.0436 -1.0159 43 1 10.0946 4.5573 0.5183 44 1 12.3231 3.5868 0.5040 45 1 12.1770 3.4768 -1.2665 46 1 14.2893 5.0298 -0.6416 47 1 17.2307 6.5714 -0.9766 48 1 4.1119 -2.1441 0.0099 49 1 1.2537 -2.8119 1.0380 50 1 0.4856 -2.3700 -0.5058 51 1 2.0237 -3.2659 -0.5013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568207038.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:33 Heat of formation + Delta-G solvation = -65.628610 kcal Electronic energy + Delta-G solvation = -28521.712068 eV Core-core repulsion = 24420.019418 eV Total energy + Delta-G solvation = -4101.692650 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.66695 -39.20218 -38.37077 -37.23201 -34.97839 -34.05448 -33.77748 -32.58660 -32.18537 -31.18446 -28.41341 -27.64379 -27.40801 -26.34807 -24.81190 -23.39246 -22.46918 -22.33451 -20.66763 -20.02577 -19.21930 -18.01650 -17.81781 -16.84099 -16.28502 -15.83848 -15.72758 -15.50492 -15.43516 -15.07500 -14.80019 -14.57481 -14.39231 -14.25839 -13.99248 -13.72102 -13.58578 -13.32073 -13.28282 -13.07025 -12.97702 -12.82763 -12.64111 -12.45545 -12.17163 -12.00894 -11.77421 -11.58651 -11.54155 -11.42664 -11.20395 -11.05888 -10.97001 -10.89884 -10.44072 -10.22248 -10.19488 -9.49764 -9.40556 -9.25317 -9.01736 -8.46221 -8.06363 -7.95574 -6.41250 -3.82234 0.43457 0.91187 2.51827 2.84177 3.20351 3.26079 3.30426 3.44503 3.91314 4.08977 4.23743 4.25079 4.31167 4.38098 4.52847 4.64415 4.70627 4.75270 4.77698 4.86743 5.01232 5.03871 5.13619 5.17890 5.24677 5.25926 5.29985 5.35285 5.36548 5.42883 5.53137 5.58505 5.59600 5.68466 5.71623 5.79752 5.84825 5.86266 5.93147 5.99076 6.03640 6.11792 6.12819 6.20868 6.27690 6.46415 7.19566 7.20445 7.55251 7.65891 7.92171 8.06429 8.61655 9.18040 9.54695 10.06139 10.76382 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.032952 B = 0.001318 C = 0.001278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.528020 B =21239.524939 C =21896.798842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.063 4.063 3 C -0.124 4.124 4 C -0.088 4.088 5 C -0.136 4.136 6 C 0.557 3.443 7 O -0.539 6.539 8 N -0.722 5.722 9 C 0.125 3.875 10 C -0.102 4.102 11 H 0.089 0.911 12 C -0.153 4.153 13 C 0.066 3.934 14 N -0.668 5.668 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.301 4.301 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.056 4.056 28 C -0.097 4.097 29 C -0.118 4.118 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.400 0.600 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.030 0.970 42 H 0.074 0.926 43 H 0.349 0.651 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.136 0.864 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.369 -16.561 3.500 33.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.063 4.063 3 C -0.142 4.142 4 C -0.106 4.106 5 C -0.139 4.139 6 C 0.345 3.655 7 O -0.417 6.417 8 N -0.374 5.374 9 C 0.001 3.999 10 C -0.121 4.121 11 H 0.108 0.892 12 C -0.210 4.210 13 C -0.064 4.064 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.469 6.469 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.075 4.075 28 C -0.097 4.097 29 C -0.174 4.174 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.236 0.764 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.049 0.951 42 H 0.093 0.907 43 H 0.169 0.831 44 H 0.061 0.939 45 H 0.105 0.895 46 H 0.226 0.774 47 H 0.082 0.918 48 H 0.154 0.846 49 H 0.091 0.909 50 H 0.091 0.909 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -29.324 -16.655 2.818 33.841 hybrid contribution 0.993 0.717 0.800 1.463 sum -28.331 -15.939 3.618 32.707 Atomic orbital electron populations 1.20939 0.90918 1.03264 1.02736 1.20005 0.96326 0.92601 0.97411 1.20980 0.93838 0.97819 1.01571 1.21284 0.94565 0.96955 0.97827 1.19911 0.92756 0.94459 1.06781 1.18275 0.87116 0.83811 0.76335 1.90777 1.69909 1.31184 1.49799 1.45923 1.07750 1.08478 1.75251 1.21417 0.78731 0.97046 1.02703 1.21373 0.96443 0.94499 0.99800 0.89245 1.21908 1.00990 1.01511 0.96611 1.21876 0.93078 0.90866 1.00579 1.60085 1.09982 1.09295 1.50811 1.21671 0.88324 0.96989 1.01261 1.19811 0.83358 0.89706 0.84545 1.90516 1.52821 1.47686 1.55856 1.41855 1.05445 1.08969 1.63689 1.19658 0.92051 0.84229 1.47104 0.87977 1.25258 0.95578 0.99737 0.97295 1.69608 1.02377 1.32087 1.50229 0.85917 0.77238 0.81975 0.79078 1.19926 1.20969 1.19882 1.21149 0.93110 0.97839 0.95431 1.19756 0.93349 0.95300 1.01276 1.20879 1.00089 0.93808 1.02654 0.90697 0.91244 0.90816 0.85294 0.85580 0.76370 0.91188 0.91014 0.92828 0.92583 0.91339 0.95138 0.90720 0.83070 0.93854 0.89545 0.77437 0.91815 0.84646 0.90899 0.90940 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 9.59 36.00 0.35 -0.13 16 2 C -0.06 -0.41 5.89 -104.53 -0.62 -1.02 16 3 C -0.12 -0.80 9.68 -39.64 -0.38 -1.18 16 4 C -0.09 -0.63 9.54 -39.19 -0.37 -1.01 16 5 C -0.14 -1.28 5.87 -104.97 -0.62 -1.89 16 6 C 0.56 6.27 7.77 -12.33 -0.10 6.18 16 7 O -0.54 -7.96 16.35 5.32 0.09 -7.88 16 8 N -0.72 -6.53 5.23 -61.25 -0.32 -6.85 16 9 C 0.12 1.21 5.06 -4.04 -0.02 1.19 16 10 C -0.10 -0.99 2.63 -90.62 -0.24 -1.23 16 11 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 12 C -0.15 -1.39 8.84 37.16 0.33 -1.06 16 13 C 0.07 0.78 5.14 -3.83 -0.02 0.76 16 14 N -0.67 -10.52 6.12 -115.06 -0.70 -11.23 16 15 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 16 C 0.44 10.42 7.82 -10.99 -0.09 10.34 16 17 O -0.58 -15.85 15.78 5.54 0.09 -15.76 16 18 N -0.56 -14.33 5.29 -10.97 -0.06 -14.38 16 19 C -0.30 -8.42 9.68 -14.94 -0.14 -8.57 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 23 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C -0.06 -0.51 9.24 -39.18 -0.36 -0.87 16 28 C -0.10 -0.70 5.87 -104.68 -0.61 -1.32 16 29 C -0.12 -0.57 9.60 36.01 0.35 -0.23 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 32 H 0.07 0.23 5.93 -51.93 -0.31 -0.08 16 33 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 34 H 0.13 0.64 6.41 -52.49 -0.34 0.30 16 35 H 0.40 2.72 5.69 -40.82 -0.23 2.48 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.40 7.18 -51.93 -0.37 0.03 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.71 6.68 -51.93 -0.35 0.36 16 41 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.35 5.62 6.68 -39.29 -0.26 5.36 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 47 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.14 1.26 7.65 -52.49 -0.40 0.86 16 49 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 50 H 0.07 0.26 5.93 -51.93 -0.31 -0.05 16 51 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 LS Contribution 417.76 15.07 6.30 6.30 Total: -1.00 -34.03 417.76 -9.48 -43.52 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -7.89 Total: 12.79 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -2.68 Total: 1.32 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.36 Total: -56.33 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: 0.17 Total: -23.64 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.03 -9.48 -43.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568207038.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.112 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds