Wall clock time and date at job start Wed Apr 1 2020 04:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38390 * 119.85424 * 2 1 4 4 C 1.37933 * 120.14573 * 180.23615 * 3 2 1 5 5 C 1.39597 * 119.85287 * 359.51187 * 4 3 2 6 6 C 1.47848 * 120.14556 * 180.27846 * 5 4 3 7 7 O 1.21551 * 120.00029 * 179.97438 * 6 5 4 8 8 N 1.34772 * 119.99906 * 0.02562 * 6 5 4 9 9 C 1.46501 * 120.00048 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47204 * 179.97438 * 9 8 6 11 11 H 1.08997 * 109.47295 * 305.00674 * 10 9 8 12 12 C 1.53005 * 109.46834 * 64.99732 * 10 9 8 13 13 C 1.52999 * 109.47353 * 184.99766 * 10 9 8 14 14 N 1.46891 * 109.47145 * 175.00072 * 13 10 9 15 15 C 1.46898 * 111.00064 * 180.02562 * 14 13 10 16 16 C 1.50700 * 109.47520 * 180.02562 * 15 14 13 17 17 O 1.21296 * 119.99490 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00272 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00205 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99905 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00344 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99856 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00370 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46994 * 60.00101 * 23 21 19 25 25 H 1.48503 * 109.47276 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47166 * 300.00297 * 23 21 19 27 27 C 1.39559 * 119.71316 * 0.25198 * 5 4 3 28 28 C 1.37980 * 119.84918 * 0.02562 * 27 5 4 29 29 C 1.50706 * 119.92477 * 179.97438 * 28 27 5 30 30 H 1.09003 * 109.47129 * 270.23352 * 1 2 3 31 31 H 1.08998 * 109.47413 * 30.22659 * 1 2 3 32 32 H 1.08993 * 109.46954 * 150.23529 * 1 2 3 33 33 H 1.07998 * 119.92444 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.07617 * 179.79393 * 4 3 2 35 35 H 0.97006 * 120.00132 * 359.97438 * 8 6 5 36 36 H 1.08994 * 109.47125 * 299.99850 * 9 8 6 37 37 H 1.08996 * 109.47077 * 60.00124 * 9 8 6 38 38 H 1.08996 * 109.47439 * 300.00200 * 12 10 9 39 39 H 1.09005 * 109.46741 * 60.00377 * 12 10 9 40 40 H 1.08996 * 109.47325 * 179.97438 * 12 10 9 41 41 H 1.09002 * 109.47061 * 295.00321 * 13 10 9 42 42 H 1.09004 * 109.46505 * 55.00042 * 13 10 9 43 43 H 1.00904 * 110.99890 * 56.05211 * 14 13 10 44 44 H 1.09002 * 109.47505 * 300.00506 * 15 14 13 45 45 H 1.09002 * 109.47321 * 60.00064 * 15 14 13 46 46 H 0.97006 * 120.00095 * 0.02562 * 18 16 15 47 47 H 0.97006 * 120.00117 * 180.02562 * 22 21 19 48 48 H 1.07997 * 120.07558 * 180.02562 * 27 5 4 49 49 H 1.08999 * 109.47345 * 89.99594 * 29 28 27 50 50 H 1.09007 * 109.46402 * 209.99830 * 29 28 27 51 51 H 1.08995 * 109.46837 * 329.99224 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5751 1.2073 -0.0049 5 6 4.2762 0.0001 0.0004 6 6 5.7547 0.0001 0.0014 7 8 6.3624 -1.0525 0.0065 8 7 6.4285 1.1673 -0.0023 9 6 7.8935 1.1673 -0.0019 10 6 8.4035 2.6099 -0.0072 11 1 7.9691 3.1457 -0.8511 12 6 7.9983 3.2989 1.2974 13 6 9.9284 2.6113 -0.1325 14 7 10.4081 3.9940 -0.2580 15 6 11.8713 4.0345 -0.3812 16 6 12.3255 5.4659 -0.5070 17 8 11.5104 6.3640 -0.4947 18 7 13.6374 5.7481 -0.6321 19 6 14.0507 7.0503 -0.7460 20 1 13.3249 7.8500 -0.7359 21 6 15.4032 7.3413 -0.8745 22 7 16.2864 6.3682 -0.8873 23 14 15.9663 9.1156 -1.0304 24 1 15.5489 9.8751 0.1755 25 1 17.4455 9.1565 -1.1543 26 1 15.3519 9.7257 -2.2368 27 6 3.5754 -1.2068 0.0054 28 6 2.1956 -1.1997 0.0044 29 6 1.4372 -2.5020 0.0092 30 1 -0.3633 0.0042 1.0277 31 1 -0.3634 0.8879 -0.5173 32 1 -0.3633 -0.8920 -0.5101 33 1 1.6522 2.1335 0.0004 34 1 4.1116 2.1446 -0.0083 35 1 5.9435 2.0074 -0.0060 36 1 8.2566 0.6566 0.8899 37 1 8.2571 0.6506 -0.8900 38 1 6.9120 3.2978 1.3867 39 1 8.4327 2.7630 2.1414 40 1 8.3619 4.3263 1.2939 41 1 10.3662 2.1539 0.7548 42 1 10.2208 2.0436 -1.0159 43 1 10.0946 4.5573 0.5183 44 1 12.3231 3.5868 0.5040 45 1 12.1770 3.4768 -1.2665 46 1 14.2893 5.0298 -0.6416 47 1 17.2307 6.5714 -0.9766 48 1 4.1119 -2.1441 0.0099 49 1 1.2537 -2.8119 1.0380 50 1 0.4856 -2.3700 -0.5058 51 1 2.0237 -3.2659 -0.5013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568207038.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:32 Heat of formation + Delta-G solvation = -89.098607 kcal Electronic energy + Delta-G solvation = -28522.729803 eV Core-core repulsion = 24420.019418 eV Total energy + Delta-G solvation = -4102.710386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.37808 -40.20176 -39.82949 -38.31795 -36.22101 -35.71449 -34.57165 -33.35373 -33.07997 -33.01591 -29.05150 -28.69328 -28.19184 -27.19596 -26.34830 -24.58928 -23.19893 -22.91156 -21.51291 -21.13063 -20.67697 -19.90339 -18.65402 -17.96581 -17.40358 -17.10745 -16.64751 -16.40575 -16.29408 -16.17360 -15.99808 -15.69132 -15.50607 -15.29391 -15.04937 -14.82339 -14.57424 -14.36395 -13.98614 -13.91796 -13.61904 -13.58982 -13.46747 -13.44478 -13.35072 -13.08237 -12.81646 -12.79467 -12.65282 -12.43128 -12.24599 -12.13893 -12.08921 -11.89880 -11.86688 -11.76209 -11.49740 -11.08445 -10.34593 -10.23315 -10.01633 -9.81440 -9.55532 -9.32864 -8.46300 -5.95366 -0.17907 0.36932 1.40281 1.42221 1.53216 1.78589 2.04978 2.05775 2.29930 2.81931 2.94619 3.21024 3.52804 3.62888 3.77587 3.88729 3.90641 3.93134 3.96471 4.03658 4.23621 4.28340 4.32947 4.46805 4.51219 4.55140 4.57574 4.60867 4.71091 4.74534 4.78544 4.80240 4.81530 4.93180 4.93717 4.97534 4.99806 5.17074 5.21065 5.29222 5.30654 5.34482 5.40232 5.40825 5.42303 5.64189 5.88305 5.96172 6.09683 6.41257 6.45886 6.60099 7.11883 7.12440 7.56206 8.11210 8.70822 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.032952 B = 0.001318 C = 0.001278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.528020 B =21239.524939 C =21896.798842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.128 4.128 4 C -0.087 4.087 5 C -0.158 4.158 6 C 0.554 3.446 7 O -0.584 6.584 8 N -0.709 5.709 9 C 0.131 3.869 10 C -0.089 4.089 11 H 0.087 0.913 12 C -0.151 4.151 13 C 0.066 3.934 14 N -0.680 5.680 15 C 0.063 3.937 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.336 4.336 20 H 0.080 0.920 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.272 1.272 27 C -0.076 4.076 28 C -0.105 4.105 29 C -0.118 4.118 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.413 0.587 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.041 0.959 42 H 0.079 0.921 43 H 0.346 0.654 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.120 0.880 49 H 0.080 0.920 50 H 0.089 0.911 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.999 -16.192 3.666 35.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.145 4.145 4 C -0.106 4.106 5 C -0.161 4.161 6 C 0.343 3.657 7 O -0.466 6.466 8 N -0.362 5.362 9 C 0.007 3.993 10 C -0.108 4.108 11 H 0.106 0.894 12 C -0.208 4.208 13 C -0.063 4.063 14 N -0.314 5.314 15 C -0.069 4.069 16 C 0.225 3.775 17 O -0.509 6.509 18 N -0.210 5.210 19 C -0.466 4.466 20 H 0.098 0.902 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.095 4.095 28 C -0.105 4.105 29 C -0.174 4.174 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.251 0.749 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.165 0.835 44 H 0.084 0.916 45 H 0.121 0.879 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.138 0.862 49 H 0.098 0.902 50 H 0.107 0.893 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -30.962 -16.289 2.985 35.112 hybrid contribution 1.403 0.572 0.753 1.692 sum -29.559 -15.717 3.738 33.685 Atomic orbital electron populations 1.21012 0.88867 1.04298 1.03613 1.20399 0.97883 0.92249 0.95905 1.21344 0.93614 0.98936 1.00636 1.21517 0.95200 0.96808 0.97046 1.19874 0.91648 0.95599 1.08943 1.18640 0.88021 0.83533 0.75482 1.90744 1.70904 1.32740 1.52166 1.45809 1.07523 1.08590 1.74248 1.21290 0.79081 0.96756 1.02176 1.21212 0.95024 0.94384 1.00143 0.89449 1.21890 1.02227 1.00534 0.96166 1.21957 0.94335 0.88696 1.01336 1.60082 1.08689 1.11545 1.51073 1.21538 0.89733 0.92596 1.03036 1.20872 0.82366 0.91982 0.82327 1.90483 1.53634 1.49770 1.57044 1.41929 1.06344 1.08334 1.64372 1.19654 0.92455 0.85032 1.49454 0.90229 1.26041 0.95097 1.03794 0.96234 1.69672 1.02755 1.33732 1.49968 0.84988 0.77303 0.77090 0.78955 1.19606 1.19512 1.19726 1.21201 0.94171 0.97380 0.96790 1.20020 0.92725 0.96832 1.00910 1.20931 1.00472 0.92657 1.03319 0.89732 0.90097 0.89963 0.82785 0.83565 0.74901 0.91625 0.91759 0.91002 0.92428 0.92592 0.94031 0.90237 0.83454 0.91631 0.87856 0.76987 0.91294 0.86151 0.90188 0.89277 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 9.59 71.23 0.68 0.07 16 2 C -0.06 -0.71 5.89 -19.81 -0.12 -0.82 16 3 C -0.13 -1.35 9.68 22.23 0.22 -1.13 16 4 C -0.09 -1.13 9.54 22.53 0.21 -0.91 16 5 C -0.16 -2.97 5.87 -20.09 -0.12 -3.09 16 6 C 0.55 12.72 7.77 86.79 0.67 13.40 16 7 O -0.58 -18.11 16.35 -3.88 -0.06 -18.18 16 8 N -0.71 -12.36 5.23 -465.98 -2.44 -14.80 16 9 C 0.13 2.45 5.06 86.38 0.44 2.88 16 10 C -0.09 -1.60 2.63 -10.79 -0.03 -1.63 16 11 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 12 C -0.15 -2.53 8.84 71.98 0.64 -1.89 16 13 C 0.07 1.46 5.14 86.30 0.44 1.90 16 14 N -0.68 -20.72 6.12 -517.94 -3.17 -23.89 16 15 C 0.06 2.16 6.17 85.56 0.53 2.69 16 16 C 0.44 20.81 7.82 87.66 0.69 21.49 16 17 O -0.62 -34.38 15.78 -3.08 -0.05 -34.42 16 18 N -0.57 -29.50 5.29 -306.99 -1.62 -31.12 16 19 C -0.34 -19.17 9.68 84.04 0.81 -18.36 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.63 5.50 84.92 0.47 -0.17 16 22 N -0.92 -49.82 13.05 21.66 0.28 -49.53 16 23 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 C -0.08 -1.44 9.24 22.53 0.21 -1.23 16 28 C -0.10 -1.45 5.87 -19.90 -0.12 -1.57 16 29 C -0.12 -1.03 9.60 71.24 0.68 -0.35 16 30 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.08 0.25 8.08 -2.39 -0.02 0.23 16 32 H 0.08 0.29 5.93 -2.39 -0.01 0.27 16 33 H 0.15 0.81 8.06 -2.91 -0.02 0.79 16 34 H 0.15 1.15 6.41 -2.91 -0.02 1.13 16 35 H 0.41 4.96 5.69 -92.70 -0.53 4.43 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 0.93 7.18 -2.39 -0.02 0.91 16 39 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.06 1.11 6.68 -2.39 -0.02 1.09 16 41 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.35 10.93 6.68 -89.69 -0.60 10.33 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 46 H 0.40 19.40 7.90 -92.70 -0.73 18.67 16 47 H 0.28 14.10 8.31 -92.70 -0.77 13.33 16 48 H 0.12 2.51 7.65 -2.91 -0.02 2.49 16 49 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.09 0.46 5.93 -2.38 -0.01 0.45 16 51 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 Total: -1.00 -74.98 417.76 0.39 -74.59 By element: Atomic # 1 Polarization: 42.05 SS G_CDS: -0.89 Total: 41.16 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 6.31 Total: 11.28 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -6.95 Total: -119.35 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -0.11 Total: -52.60 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -74.98 0.39 -74.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568207038.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.509 kcal (2) G-P(sol) polarization free energy of solvation -74.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds